Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0022954

Physical Location & Seq

Genomic Coordinates Forward (+)

27549514 .. 27549885

Gene Structure 372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATGCGTGCTCATTACGTCCTCGCACTCCTCGCCCTCCTTAATCCACTCTTCGCCGCAGGCGTTTCTGCTCCGACTGGTGAGTGGAAGCCTGTAGATCTCCGCGACCCGCTTGTGACAGATATCGGAAAGTTTGCAGTTATCGAATACAATCAGCGATATAAGGACTTGTTCTTCCGGAAGGTGACTAAAGGCGCCTACAAGGATGAATATTATTCACCGTATTCGAATGCCACCTTGTATCAGCTTGTCCTTATTGTTGATGCTGACTCCAGTCCTGACCCCAAACTTGCAGTTTATCAAACTACTGTCTTCCGTAGGCAGTGGGATCACTTTCTGAAATTGCGCTCCTTTGTTAAGATTTCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

123

Amino Acids

14.23

Weight (kDa)

9.42

Isoelectric Point (pI)

25.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	33 - 120	2.9e-11	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022954)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000019899
rosa_multiflora	Rmu_sc0003342.1_g000043
rosa_roxburghii	Rroxscaffold_2G00104460
rosa_rugosa	Rorug02G0365500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccII	CGCG	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	177
AciI	CCGC	3 cut(s)	57, 103, 110
AclWI	GGATC	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	366
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw21I	GWGCWC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	336
Aor13HI	TCCGGA	1 cut(s)	177
AspLEI	GCGC	2 cut(s)	197, 348
AsuHPI	GGTGA	3 cut(s)	92, 196, 210
AsuII	TTCGAA	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	13
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	198
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	196
BmsI	GCATC	1 cut(s)	253
BoxI	GACNNNNGTC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	304
BpmI	CTGGAG	1 cut(s)	256
Bpu14I	TTCGAA	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	177
Bse1I	ACTGG	2 cut(s)	82, 273
BseAI	TCCGGA	1 cut(s)	177
BseGI	GGATG	1 cut(s)	211
BseNI	ACTGG	2 cut(s)	82, 273
BseRI	GAGGAG	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	235
Bsp119I	TTCGAA	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp13I	TCCGGA	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	97, 328
BspACI	CCGC	3 cut(s)	57, 103, 110
BspEI	TCCGGA	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	336
BspT104I	TTCGAA	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	82, 273
BssMI	GATC	2 cut(s)	97, 328
BssNI	GRCGYC	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	222, 310
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	195
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	9, 61
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	2 cut(s)	197, 348
BstKTI	GATC	2 cut(s)	100, 331
BstMBI	GATC	2 cut(s)	97, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstPAI	GACNNNNGTC	1 cut(s)	273
BstSFI	CTRYAG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	105
BstV2I	GAAGAC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	2 cut(s)	9, 61
CfoI	GCGC	2 cut(s)	197, 348
CviJI	RGCY	2 cut(s)	91, 247
CviKI_1	RGCY	2 cut(s)	91, 247
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	2 cut(s)	99, 330
DpnII	GATC	2 cut(s)	97, 328
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	124
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
FaiI	YATR	1 cut(s)	162
FauI	CCCGC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	2 cut(s)	196, 347
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	256
HaeII	RGCGCY	1 cut(s)	198
HapII	CCGG	1 cut(s)	178
HhaI	GCGC	2 cut(s)	197, 348
Hin1I	GRCGYC	1 cut(s)	195
Hin6I	GCGC	2 cut(s)	195, 346
HinP1I	GCGC	2 cut(s)	195, 346
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	3 cut(s)	92, 196, 210
Hpy188I	TCNGA	3 cut(s)	75, 128, 339
Hpy188III	TCNNGA	2 cut(s)	178, 278
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	2 cut(s)	222, 310
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	137, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	195
HspAI	GCGC	2 cut(s)	195, 346
KasI	GGCGCC	1 cut(s)	194
Kpn2I	TCCGGA	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	97, 328
LmnI	GCTCC	2 cut(s)	76, 353
LpnPI	CCDG	6 cut(s)	45, 63, 105, 191, 286, 291
LweI	GCATC	1 cut(s)	253
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	115, 184
MalI	GATC	2 cut(s)	99, 330
MboI	GATC	2 cut(s)	97, 328
MboII	GAAGA	3 cut(s)	43, 166, 304
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	1 cut(s)	341
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	3 cut(s)	32, 41, 47
MroI	TCCGGA	1 cut(s)	177
MseI	TTAA	2 cut(s)	42, 357
MspI	CCGG	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	235
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	32
NarI	GGCGCC	1 cut(s)	195
NdeII	GATC	2 cut(s)	97, 328
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	2 cut(s)	115, 184
NspV	TTCGAA	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PctI	GAATGC	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	263
PluTI	GGCGCC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	263
PshAI	GACNNNNGTC	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	42, 357
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	2 cut(s)	97, 328
SchI	GAGTC	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	4 cut(s)	21, 186, 239, 249
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	93
SfoI	GGCGCC	1 cut(s)	196
SfuI	TTCGAA	1 cut(s)	227
Sse9I	AATT	1 cut(s)	341
SsiI	CCGC	3 cut(s)	57, 103, 110
SspDI	GGCGCC	1 cut(s)	194
SspI	AATATT	1 cut(s)	212
TaaI	ACNGT	2 cut(s)	222, 310
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	144, 227
TasI	AATT	1 cut(s)	341
TauI	GCSGC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	42, 357
Tru9I	TTAA	2 cut(s)	42, 357
TscAI	CASTG	1 cut(s)	329
TseFI	GTSAC	2 cut(s)	115, 184
Tsp45I	GTSAC	2 cut(s)	115, 184
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.