Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0020765

Physical Location & Seq

Genomic Coordinates Reverse (-)

46379620 .. 46382160

Gene Structure 2541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0365500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCATGGCTTTGGCAGCAACAAATACTCATGCTCGCTTAGATCTATTTGGCCACCAGCTGCTTACCTCCAAGAGCCAACCAGATCCCAATTCTGAAGCGAAGATGCTCAAATCAGCAACCACTAAAGCGGCCGAAAAATTGATGAATGCAGCAGCTGTAGTCCAAGAAGAGAAACCGAGCAGCAGCAAAGTGAAAGCAGATACAATTCCATATTCAGAATGCCAGGAAACCTGCAACTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGCTGGATCAAGCAAATTATCAACCACTAAAGCGGCCGAAAATTTGCTTAAGCCAGCTGCTGTAGTCCAAGAAGAGAAACCGAGTAGCAGCAAAGTGAAAGCAGATACAATTCCATATTTAGAATGCCAGGAAAACTGCAACTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGCTGGATCAAACAAATTATCAACCACTAAAGAAGCCGAAAAATTGCAGAAGGAATTGGACTTGGTGTCCAAACCAGTTGCAAAATTGGAAGGAAGCTTTCTTCCATATCCGGAATGCATCGAAAAATGTGATGAGTGTGTAATCTGCACTAGAGTTTATCCGATTGAGGCGGCATATTGCTATTGTGGCATGAATCCATCAATTCAGAAATCGGATGCAGGCATAGCCCTCCCGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

251

Amino Acids

27.28

Weight (kDa)

5.59

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020765)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_2G00105740
rosa_rugosa	Rorug01G0065800 Rorug02G0365500 Rorug06G0145800
rosa_samantha	Rh3BG357200
rosa_wichuraiana	Rw0G005130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	269
AccIII	TCCGGA	1 cut(s)	625
AciI	CCGC	3 cut(s)	158, 353, 686
AclWI	GGATC	3 cut(s)	107, 334, 529
AcoI	YGGCCR	5 cut(s)	79, 159, 293, 354, 488
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	144
AflII	CTTAAG	1 cut(s)	368
AflIII	ACRYGT	2 cut(s)	272, 467
AgsI	TTSAA	1 cut(s)	7
AhdI	GACNNNNNGTC	1 cut(s)	580
AjnI	CCWGG	2 cut(s)	252, 447
AluBI	AGCT	4 cut(s)	88, 185, 377, 612
AluI	AGCT	4 cut(s)	88, 185, 377, 612
AlwI	GGATC	3 cut(s)	107, 334, 529
AlwNI	CAGNNNCTG	2 cut(s)	185, 380
Aor13HI	TCCGGA	1 cut(s)	625
AoxI	GGCC	5 cut(s)	79, 159, 293, 354, 488
ApeKI	GCWGC	8 cut(s)	44, 88, 179, 182, 210, 213, 377, 408
ApoI	RAATTY	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	749
BalI	TGGCCA	3 cut(s)	81, 295, 490
BbvI	GCAGC	8 cut(s)	56, 75, 191, 194, 222, 225, 364, 420
BccI	CCATC	1 cut(s)	721
BciT130I	CCWGG	2 cut(s)	254, 449
BcnI	CCSGG	1 cut(s)	749
BfaI	CTAG	2 cut(s)	666, 754
BfmI	CTRYAG	2 cut(s)	186, 381
BfrI	CTTAAG	1 cut(s)	368
BfuAI	ACCTGC	1 cut(s)	269
BglII	AGATCT	1 cut(s)	70
Bme1390I	CCNGG	3 cut(s)	254, 449, 749
BmeRI	GACNNNNNGTC	1 cut(s)	580
BmrFI	CCNGG	3 cut(s)	254, 449, 749
BmsI	GCATC	3 cut(s)	123, 642, 721
BpuMI	CCSGG	1 cut(s)	749
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	625
Bse1I	ACTGG	1 cut(s)	590
BseAI	TCCGGA	1 cut(s)	625
BseBI	CCWGG	2 cut(s)	254, 449
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	736
BseNI	ACTGG	1 cut(s)	590
BseX3I	CGGCCG	2 cut(s)	159, 354
BseXI	GCAGC	8 cut(s)	56, 75, 191, 194, 222, 225, 364, 420
BsgI	GTGCAG	1 cut(s)	646
Bsh1285I	CGRYCG	2 cut(s)	162, 357
BshFI	GGCC	5 cut(s)	81, 161, 295, 356, 490
BsiEI	CGRYCG	2 cut(s)	162, 357
BsiSI	CCGG	2 cut(s)	626, 749
BsmI	GAATGC	4 cut(s)	181, 254, 449, 635
BsnI	GGCC	5 cut(s)	81, 161, 295, 356, 490
Bsp13I	TCCGGA	1 cut(s)	625
Bsp143I	GATC	4 cut(s)	70, 112, 326, 521
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	3 cut(s)	158, 353, 686
BspANI	GGCC	5 cut(s)	81, 161, 295, 356, 490
BspEI	TCCGGA	1 cut(s)	625
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	3 cut(s)	107, 334, 529
BspTI	CTTAAG	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	590
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	4 cut(s)	70, 112, 326, 521
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	2 cut(s)	254, 449
Bst4CI	ACNGT	2 cut(s)	312, 507
Bst6I	CTCTTC	2 cut(s)	192, 387
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	4 cut(s)	30, 64, 375, 736
BstDEI	CTNAG	1 cut(s)	67
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	736
BstKTI	GATC	4 cut(s)	73, 115, 329, 524
BstMBI	GATC	4 cut(s)	70, 112, 326, 521
BstMCI	CGRYCG	2 cut(s)	162, 357
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 702, 740
BstNI	CCWGG	2 cut(s)	254, 449
BstNSI	RCATGY	2 cut(s)	276, 471
BstSCI	CCNGG	3 cut(s)	252, 447, 747
BstSFI	CTRYAG	2 cut(s)	186, 381
BstV1I	GCAGC	8 cut(s)	56, 75, 191, 194, 222, 225, 364, 420
BstX2I	RGATCY	2 cut(s)	70, 112
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	2 cut(s)	70, 112
BstZI	CGGCCG	2 cut(s)	159, 354
BsuRI	GGCC	5 cut(s)	81, 161, 295, 356, 490
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	736
BtsIMutI	CAGTG	2 cut(s)	317, 512
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	4 cut(s)	30, 64, 375, 736
CaiI	CAGNNNCTG	2 cut(s)	185, 380
CviAII	CATG	5 cut(s)	34, 59, 273, 468, 706
DdeI	CTNAG	1 cut(s)	67
DpnI	GATC	4 cut(s)	72, 114, 328, 523
DpnII	GATC	4 cut(s)	70, 112, 326, 521
DriI	GACNNNNNGTC	1 cut(s)	580
EaeI	YGGCCR	5 cut(s)	79, 159, 293, 354, 488
EagI	CGGCCG	2 cut(s)	159, 354
Eam1104I	CTCTTC	2 cut(s)	192, 387
Eam1105I	GACNNNNNGTC	1 cut(s)	580
EarI	CTCTTC	2 cut(s)	192, 387
EclXI	CGGCCG	2 cut(s)	159, 354
Eco130I	CCWWGG	1 cut(s)	33
Eco52I	CGGCCG	2 cut(s)	159, 354
Eco57I	CTGAAG	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	252, 447
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	635
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	5 cut(s)	37, 62, 276, 471, 709
FatI	CATG	5 cut(s)	33, 58, 272, 467, 705
FokI	GGATG	1 cut(s)	743
FspBI	CTAG	2 cut(s)	666, 754
HaeIII	GGCC	5 cut(s)	81, 161, 295, 356, 490
HapII	CCGG	2 cut(s)	626, 749
Hin1II	CATG	5 cut(s)	37, 62, 276, 471, 709
HindIII	AAGCTT	1 cut(s)	610
HinfI	GANTC	1 cut(s)	709
HpaII	CCGG	2 cut(s)	626, 749
Hpy188I	TCNGA	5 cut(s)	124, 247, 678, 723, 730
Hpy188III	TCNNGA	1 cut(s)	626
HpyAV	CCTTC	2 cut(s)	559, 599
HpyCH4III	ACNGT	2 cut(s)	312, 507
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 702, 740
HpyF3I	CTNAG	1 cut(s)	67
Hsp92II	CATG	5 cut(s)	37, 62, 276, 471, 709
Kpn2I	TCCGGA	1 cut(s)	625
Kzo9I	GATC	4 cut(s)	70, 112, 326, 521
Lsp1109I	GCAGC	8 cut(s)	56, 75, 191, 194, 222, 225, 364, 420
LweI	GCATC	3 cut(s)	123, 642, 721
MaeI	CTAG	2 cut(s)	666, 754
MalI	GATC	4 cut(s)	72, 114, 328, 523
MboI	GATC	4 cut(s)	70, 112, 326, 521
MboII	GAAGA	4 cut(s)	142, 209, 404, 608
MflI	RGATCY	2 cut(s)	70, 112
MlsI	TGGCCA	3 cut(s)	81, 295, 490
MluNI	TGGCCA	3 cut(s)	81, 295, 490
MnlI	CCTC	3 cut(s)	106, 676, 755
Mox20I	TGGCCA	3 cut(s)	81, 295, 490
Mph1103I	ATGCAT	1 cut(s)	635
MroI	TCCGGA	1 cut(s)	625
MscI	TGGCCA	3 cut(s)	81, 295, 490
MseI	TTAA	2 cut(s)	20, 369
Msp20I	TGGCCA	3 cut(s)	81, 295, 490
MspA1I	CMGCKG	3 cut(s)	88, 185, 377
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	2 cut(s)	626, 749
MspR9I	CCNGG	3 cut(s)	254, 449, 749
Mva1269I	GAATGC	4 cut(s)	181, 254, 449, 635
MvaI	CCWGG	2 cut(s)	254, 449
MwoI	GCNNNNNNNGC	3 cut(s)	44, 702, 740
NciI	CCSGG	1 cut(s)	749
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	4 cut(s)	70, 112, 326, 521
NlaIII	CATG	5 cut(s)	37, 62, 276, 471, 709
NsiI	ATGCAT	1 cut(s)	635
NspI	RCATGY	2 cut(s)	276, 471
PciI	ACATGT	2 cut(s)	272, 467
PctI	GAATGC	4 cut(s)	181, 254, 449, 635
PfeI	GAWTC	1 cut(s)	709
PscI	ACATGT	2 cut(s)	272, 467
Psp6I	CCWGG	2 cut(s)	252, 447
PspGI	CCWGG	2 cut(s)	252, 447
PstNI	CAGNNNCTG	2 cut(s)	185, 380
PsuI	RGATCY	2 cut(s)	70, 112
PvuII	CAGCTG	3 cut(s)	88, 185, 377
SaqAI	TTAA	2 cut(s)	20, 369
Sau3AI	GATC	4 cut(s)	70, 112, 326, 521
ScrFI	CCNGG	3 cut(s)	254, 449, 749
SetI	ASST	8 cut(s)	90, 98, 187, 263, 301, 379, 496, 614
SfaNI	GCATC	3 cut(s)	123, 642, 721
SfcI	CTRYAG	2 cut(s)	186, 381
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SsiI	CCGC	3 cut(s)	158, 353, 686
SspMI	CTAG	2 cut(s)	666, 754
StyD4I	CCNGG	3 cut(s)	252, 447, 747
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	312, 507
TaqI	TCGA	1 cut(s)	636
TauI	GCSGC	3 cut(s)	161, 356, 689
TfiI	GAWTC	1 cut(s)	709
Tru1I	TTAA	2 cut(s)	20, 369
Tru9I	TTAA	2 cut(s)	20, 369
TscAI	CASTG	2 cut(s)	317, 512
TseI	GCWGC	8 cut(s)	44, 88, 179, 182, 210, 213, 377, 408
TspDTI	ATGAA	2 cut(s)	188, 722
TspRI	CASTG	2 cut(s)	317, 512
Vha464I	CTTAAG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	2 cut(s)	276, 471
XspI	CTAG	2 cut(s)	666, 754
Zsp2I	ATGCAT	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.