Rh3BG357200

Belongs to the spermidine spermine synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0020765
Physical Location & Seq
Reverse (-)
42663425 .. 42665343
1919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG357200.1

Sequence Viewer

Length: 516 bp
ATGGGGGAAGACGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGTGAGTAACATAAATGGTTTAGAGAAGGCCATTCCTTCTTGTTGCTTGAAGGCTAGGGCTTCAGATCCTGAGGCTGATGCAATAAGCCATTCTACTGTTGTTTCTGGGTGGTTTTCAGAATCCCAGTCTCGCACAGATAAGGCTAGTAGAAAGACTTACTTCTGTGAATCTGCGTTGAGATTTTCCAGTGTTGTCTGTGTTGCAGGTTGGCTTGCCATTTACTTTTCCAAGGTACCTATATTTGTTGCTGAAATTGCACCCAAACATCTTCGAGGAAGTCTAACTGCTTTGAATCAGTTGATGATCGTTGCTGGAGTGTCAGTGTCCTTCGTAATTGGGGTAGTAGTAAGTTGGAGGACTTTAGCATTAATTGGTGAGTTTCTTAGACAATCAGTGCTTGTAGTTAGATCAGATGACCTGTCTAATACAGTGAAGAGGACTCATTTATGTGGTGAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100
Pfam Domains
Protein Families
Spermine_synt_N Spermine_synth

Protein Analysis

171

Amino Acids

18.57

Weight (kDa)

8.57

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 96 - 134 3.5e-08 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020765)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_2G00105740
rosa_rugosa Rorug01G0065800 Rorug02G0365500 Rorug06G0145800
rosa_samantha Rh3BG357200
rosa_wichuraiana Rw0G005130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 248
Acc65I GGTACC 1 cut(s) 286
AccB1I GGYRCC 1 cut(s) 286
AclWI GGATC 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 1 cut(s) 288
AgsI TTSAA 2 cut(s) 103, 346
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 1 cut(s) 113
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 1 cut(s) 81
AseI ATTAAT 1 cut(s) 422
Asp718I GGTACC 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 67, 440
AxyI CCTNAGG 1 cut(s) 123
BanI GGYRCC 1 cut(s) 286
BbsI GAAGAC 2 cut(s) 15, 44
BccI CCATC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 2 cut(s) 108, 198
BfuAI ACCTGC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 288
BmrI ACTGGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 172
BpiI GAAGAC 2 cut(s) 15, 44
BpmI CTGGAG 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bse1I ACTGG 2 cut(s) 178, 240
Bse21I CCTNAGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 178, 240
BshFI GGCC 1 cut(s) 83
BshNI GGYRCC 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 186
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 1 cut(s) 83
Bsp143I GATC 3 cut(s) 118, 357, 461
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 248
BspPI GGATC 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 286
BsrI ACTGG 2 cut(s) 178, 240
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 3 cut(s) 118, 357, 461
BssT1I CCWWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 151, 484
Bst6I CTCTTC 2 cut(s) 13, 482
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 123, 437
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 3 cut(s) 121, 360, 464
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 3 cut(s) 118, 357, 461
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstV2I GAAGAC 2 cut(s) 15, 44
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
Bsu36I CCTNAGG 1 cut(s) 123
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 52
BtsIMutI CAGTG 4 cut(s) 247, 381, 453, 489
BveI ACCTGC 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 267
CaiI CAGNNNCTG 1 cut(s) 122
CseI GACGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 287
CviJI RGCY 7 cut(s) 83, 107, 113, 128, 141, 197, 265
CviKI_1 RGCY 7 cut(s) 83, 107, 113, 128, 141, 197, 265
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 2 cut(s) 123, 437
DpnI GATC 3 cut(s) 120, 359, 463
DpnII GATC 3 cut(s) 118, 357, 461
Eam1104I CTCTTC 2 cut(s) 13, 482
EarI CTCTTC 2 cut(s) 13, 482
Eco130I CCWWGG 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaiI YATR 4 cut(s) 44, 65, 293, 502
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FokI GGATG 1 cut(s) 59
FspBI CTAG 2 cut(s) 108, 198
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 1 cut(s) 83
HgaI GACGC 1 cut(s) 20
HinfI GANTC 4 cut(s) 173, 221, 346, 493
HphI GGTGA 2 cut(s) 67, 440
Hpy188I TCNGA 3 cut(s) 118, 172, 466
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 5 cut(s) 46, 73, 97, 99, 391
HpyCH4III ACNGT 2 cut(s) 151, 484
HpyCH4V TGCA 3 cut(s) 134, 257, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 2 cut(s) 123, 437
KpnI GGTACC 1 cut(s) 290
Kzo9I GATC 3 cut(s) 118, 357, 461
LpnPI CCDG 8 cut(s) 47, 135, 144, 191, 243, 253, 351, 485
LweI GCATC 1 cut(s) 121
MaeI CTAG 2 cut(s) 108, 198
MaeIII GTNAC 1 cut(s) 59
MalI GATC 3 cut(s) 120, 359, 463
MboI GATC 3 cut(s) 118, 357, 461
MboII GAAGA 5 cut(s) 20, 30, 49, 314, 499
MflI RGATCY 1 cut(s) 118
MluCI AATT 3 cut(s) 306, 387, 423
MlyI GAGTC 1 cut(s) 487
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 5 cut(s) 14, 118, 320, 402, 483
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 3 cut(s) 118, 357, 461
NlaIV GGNNCC 1 cut(s) 288
PctI GAATGC 1 cut(s) 35
PfeI GAWTC 3 cut(s) 173, 221, 346
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
PshBI ATTAAT 1 cut(s) 422
PspN4I GGNNCC 1 cut(s) 288
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 1 cut(s) 422
Sau3AI GATC 3 cut(s) 118, 357, 461
SchI GAGTC 1 cut(s) 487
SetI ASST 6 cut(s) 25, 57, 262, 288, 292, 474
SfaNI GCATC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 501
Sse9I AATT 3 cut(s) 306, 387, 423
SspMI CTAG 2 cut(s) 108, 198
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 151, 484
TaqI TCGA 1 cut(s) 325
TasI AATT 3 cut(s) 306, 387, 423
TfiI GAWTC 3 cut(s) 173, 221, 346
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 4 cut(s) 247, 381, 453, 489
TspRI CASTG 4 cut(s) 247, 381, 453, 489
VspI ATTAAT 1 cut(s) 422
XspI CTAG 2 cut(s) 108, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.