Rw0G005130

Belongs to the spermidine spermine synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00202
OG0020765
Physical Location & Seq
Reverse (-)
8232 .. 11019
2788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G005130.1

Sequence Viewer

Length: 354 bp
ATGTTTCCAAGCCTCCTGGGGCTTCGGAGTGCACTACAGAAGACTATGGATGGGAAGGTGAATAACATAAACGGTTCAGAGAAGGCCATTCCTTCTTGTTGCTTGAAGGCTAGGGCTTCAGATCCTGAGGTTGATGCAATAAGCCATTCTACTGTTGTTTCTGGGTGGTTTTCAGAATCCCGGCCAGTCTCGCACAGACTGCGAATGCTGACAGTTCTCAAGCTACACAGATGTGAGGACATCATTTCTGCCTCAATGATTGCTGGAGATCTTCAAGTTGAAACCTGCTACAAGGGCCCATTAGCTCACTTTTTCTTTAGAACATTCAACATTCCAGGGTGGAGAAGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100
Pfam Domains
Protein Families
Spermine_synt_N Spermine_synth

Protein Analysis

117

Amino Acids

12.99

Weight (kDa)

9.1

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020765)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_2G00105740
rosa_rugosa Rorug01G0065800 Rorug02G0365500 Rorug06G0145800
rosa_samantha Rh3BG357200
rosa_wichuraiana Rw0G005130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 293
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 102
AgsI TTSAA 4 cut(s) 106, 275, 281, 328
AjnI CCWGG 2 cut(s) 15, 334
AleI CACNNNNGTG 1 cut(s) 231
AluBI AGCT 2 cut(s) 223, 305
AluI AGCT 2 cut(s) 223, 305
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 193
Alw44I GTGCAC 1 cut(s) 30
AlwI GGATC 1 cut(s) 116
AlwNI CAGNNNCTG 1 cut(s) 125
AoxI GGCC 3 cut(s) 84, 182, 295
ApaI GGGCCC 1 cut(s) 299
ApaLI GTGCAC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 295, 296
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 70
AxyI CCTNAGG 1 cut(s) 126
BaeGI GKGCMC 2 cut(s) 34, 299
BanII GRGCYC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 34
BccI CCATC 1 cut(s) 44
BciT130I CCWGG 2 cut(s) 17, 336
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 293
BglII AGATCT 1 cut(s) 268
Bme1390I CCNGG 3 cut(s) 17, 181, 336
BmgT120I GGNCC 2 cut(s) 295, 296
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 3 cut(s) 17, 181, 336
BmsI GCATC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 47
BpmI CTGGAG 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 181
BsaJI CCNNGG 2 cut(s) 16, 335
Bse1I ACTGG 1 cut(s) 185
Bse21I CCTNAGG 1 cut(s) 126
BseBI CCWGG 2 cut(s) 17, 336
BseDI CCNNGG 2 cut(s) 16, 335
BseGI GGATG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 185
BseSI GKGCMC 2 cut(s) 34, 299
BshFI GGCC 3 cut(s) 86, 184, 297
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 210
BsnI GGCC 3 cut(s) 86, 184, 297
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 34, 299
Bsp143I GATC 2 cut(s) 121, 268
BspANI GGCC 3 cut(s) 86, 184, 297
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 297
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 16, 335
BssMI GATC 2 cut(s) 121, 268
Bst2UI CCWGG 2 cut(s) 17, 336
Bst4CI ACNGT 3 cut(s) 74, 154, 214
BstAPI GCANNNNNTGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 2 cut(s) 124, 271
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 2 cut(s) 121, 268
BstMWI GCNNNNNNNGC 3 cut(s) 190, 199, 294
BstNI CCWGG 2 cut(s) 17, 336
BstSCI CCNGG 3 cut(s) 15, 179, 334
BstSFI CTRYAG 1 cut(s) 35
BstSLI GKGCMC 2 cut(s) 34, 299
BstV2I GAAGAC 1 cut(s) 47
BstX2I RGATCY 2 cut(s) 121, 268
BstYI RGATCY 2 cut(s) 121, 268
Bsu36I CCTNAGG 1 cut(s) 126
BsuRI GGCC 3 cut(s) 86, 184, 297
BtsCI GGATG 1 cut(s) 55
BveI ACCTGC 1 cut(s) 293
CaiI CAGNNNCTG 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 295, 296
DdeI CTNAG 1 cut(s) 126
DpnI GATC 2 cut(s) 123, 270
DpnII GATC 2 cut(s) 121, 268
EaeI YGGCCR 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 102
Eco81I CCTNAGG 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 295
EcoRII CCWGG 2 cut(s) 15, 334
EcoT38I GRGCYC 1 cut(s) 299
FaiI YATR 2 cut(s) 47, 68
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 299
FspBI CTAG 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 3 cut(s) 86, 184, 297
HapII CCGG 1 cut(s) 181
HinfI GANTC 1 cut(s) 176
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 4 cut(s) 27, 79, 121, 175
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 4 cut(s) 49, 76, 100, 102
HpyCH4III ACNGT 3 cut(s) 74, 154, 214
HpyCH4V TGCA 2 cut(s) 32, 137
HpyF10VI GCNNNNNNNGC 3 cut(s) 190, 199, 294
HpyF3I CTNAG 1 cut(s) 126
Kzo9I GATC 2 cut(s) 121, 268
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 111
MalI GATC 2 cut(s) 123, 270
MboI GATC 2 cut(s) 121, 268
MboII GAAGA 2 cut(s) 52, 263
MflI RGATCY 2 cut(s) 121, 268
MhlI GDGCHC 2 cut(s) 34, 299
MnlI CCTC 4 cut(s) 23, 121, 229, 262
MseI TTAA 1 cut(s) 352
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 3 cut(s) 17, 181, 336
Mva1269I GAATGC 1 cut(s) 210
MvaI CCWGG 2 cut(s) 17, 336
MwoI GCNNNNNNNGC 3 cut(s) 190, 199, 294
NciI CCSGG 1 cut(s) 181
NdeII GATC 2 cut(s) 121, 268
NlaIV GGNNCC 1 cut(s) 297
OliI CACNNNNGTG 1 cut(s) 231
PctI GAATGC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 176
Psp6I CCWGG 2 cut(s) 15, 334
PspGI CCWGG 2 cut(s) 15, 334
PspN4I GGNNCC 1 cut(s) 297
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 2 cut(s) 295, 296
PstNI CAGNNNCTG 1 cut(s) 125
PsuI RGATCY 2 cut(s) 121, 268
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 1 cut(s) 352
Sau3AI GATC 2 cut(s) 121, 268
Sau96I GGNCC 2 cut(s) 295, 296
ScrFI CCNGG 3 cut(s) 17, 181, 336
SduI GDGCHC 2 cut(s) 34, 299
SetI ASST 5 cut(s) 60, 132, 225, 287, 307
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 15, 179, 334
TaaI ACNGT 3 cut(s) 74, 154, 214
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
VneI GTGCAC 1 cut(s) 30
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.