Rmu_sc0003430.1_g000010

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003430.1
OG0031263
Physical Location & Seq
Reverse (-)
32911 .. 33456
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003430.1_g000010.1.cds

Sequence Viewer

Length: 546 bp
atgaggggatttcgcgaggcactagggtatgcagacctactggacctagggtttcacggcaccaagtctacatggtggaatgctgatatgaaacttaggttagacagggcggtttgctcgccttcttggtgcgatatttttggttatgcaaaactagtgcatcttcccccaagtgattcggatcatgtgcccatattactgcatgcaagcactattcctatacctcagcgtactcgaatccaaatattcaaatttgaagctttctgggttcaacacaaagtctatgatccgattgtgaagcaggcttggcagagcgatgttacgggggttcctttgtttagagttaccagaaagaacaaacatacaagaattgcgcttgataaatggaagaaggcagagttttgtgagagacagcagagcatgctgggtatccaggctagattagaagatctaatggagaccagggcgtgcaatgaggtacaggaggagaagaagttgctgatggagtgcctacagtgtcttctttcacaagaggaatctttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

181

Amino Acids

21.14

Weight (kDa)

8.21

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031263)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003430.1_g000010 Rmu_sc0012409.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 68
AccII CGCG 1 cut(s) 15
AciI CCGC 1 cut(s) 110
AclWI GGATC 2 cut(s) 189, 281
AcsI RAATTY 1 cut(s) 251
AfaI GTAC 2 cut(s) 232, 480
AgsI TTSAA 3 cut(s) 250, 257, 272
AhlI ACTAGT 1 cut(s) 154
AjnI CCWGG 2 cut(s) 432, 461
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
Alw26I GTCTC 2 cut(s) 403, 452
AlwI GGATC 2 cut(s) 189, 281
ApoI RAATTY 1 cut(s) 251
AspA2I CCTAGG 1 cut(s) 46
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 43
AvaII GGWCC 1 cut(s) 43
AvrII CCTAGG 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 192
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 512
BbvCI CCTCAGC 1 cut(s) 225
BccI CCATC 1 cut(s) 496
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 2 cut(s) 434, 463
BciVI GTATCC 1 cut(s) 440
BcoDI GTCTC 2 cut(s) 403, 452
BcuI ACTAGT 1 cut(s) 154
BfaI CTAG 5 cut(s) 23, 47, 155, 438, 544
BfmI CTRYAG 1 cut(s) 512
BfuI GTATCC 1 cut(s) 440
BglII AGATCT 1 cut(s) 448
BlnI CCTAGG 1 cut(s) 46
Bme1390I CCNGG 2 cut(s) 434, 463
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 2 cut(s) 61, 330
BmrFI CCNGG 2 cut(s) 434, 463
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 512
Bpu10I CCTNAGC 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 46, 462
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 478
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 2 cut(s) 434, 463
BseDI CCNNGG 2 cut(s) 46, 462
BseJI GATNNNNATC 1 cut(s) 180
BseMI GCAATG 1 cut(s) 478
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 192
BseYI CCCAGC 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 59
BsmAI GTCTC 2 cut(s) 403, 452
BsmI GAATGC 1 cut(s) 85
Bso31I GGTCTC 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 3 cut(s) 181, 286, 448
Bsp68I TCGCGA 1 cut(s) 15
BspACI CCGC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 238
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 61, 330
BspPI GGATC 2 cut(s) 189, 281
BspT107I GGYRCC 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 478
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 46, 462
BssMI GATC 3 cut(s) 181, 286, 448
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 2 cut(s) 434, 463
Bst4CI ACNGT 1 cut(s) 516
BstAPI GCANNNNNTGC 1 cut(s) 421
BstC8I GCNNGC 6 cut(s) 119, 204, 208, 303, 422, 469
BstDEI CTNAG 2 cut(s) 95, 225
BstFNI CGCG 1 cut(s) 15
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 3 cut(s) 184, 289, 451
BstMAI GTCTC 2 cut(s) 403, 452
BstMBI GATC 3 cut(s) 181, 286, 448
BstMWI GCNNNNNNNGC 2 cut(s) 307, 421
BstNI CCWGG 2 cut(s) 434, 463
BstNSI RCATGY 2 cut(s) 206, 424
BstSCI CCNGG 2 cut(s) 432, 461
BstSFI CTRYAG 1 cut(s) 512
BstSLI GKGCMC 1 cut(s) 192
BstUI CGCG 1 cut(s) 15
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BsuI GTATCC 1 cut(s) 440
BtgZI GCGATG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 521
BtuMI TCGCGA 1 cut(s) 15
Cac8I GCNNGC 6 cut(s) 119, 204, 208, 303, 422, 469
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 2 cut(s) 231, 479
CviAII CATG 4 cut(s) 72, 185, 203, 421
CviJI RGCY 3 cut(s) 260, 305, 437
CviKI_1 RGCY 3 cut(s) 260, 305, 437
CviQI GTAC 2 cut(s) 231, 479
DdeI CTNAG 2 cut(s) 95, 225
DpnI GATC 3 cut(s) 183, 288, 450
DpnII GATC 3 cut(s) 181, 286, 448
Eco130I CCWWGG 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 452
Eco47I GGWCC 1 cut(s) 43
EcoRII CCWGG 2 cut(s) 432, 461
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 4 cut(s) 75, 188, 206, 424
FatI CATG 4 cut(s) 71, 184, 202, 420
FblI GTMKAC 1 cut(s) 68
FspBI CTAG 5 cut(s) 23, 47, 155, 438, 544
GlaI GCGC 1 cut(s) 375
GsaI CCCAGC 1 cut(s) 428
HhaI GCGC 1 cut(s) 376
Hin1II CATG 4 cut(s) 75, 188, 206, 424
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 3 cut(s) 176, 237, 536
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 2 cut(s) 181, 291
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 69
HpyAV CCTTC 2 cut(s) 132, 385
HpyCH4III ACNGT 1 cut(s) 516
HpyCH4V TGCA 6 cut(s) 32, 149, 160, 202, 206, 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 421
HpyF3I CTNAG 2 cut(s) 95, 225
Hsp92II CATG 4 cut(s) 75, 188, 206, 424
HspAI GCGC 1 cut(s) 374
Kzo9I GATC 3 cut(s) 181, 286, 448
LweI GCATC 1 cut(s) 169
MaeI CTAG 5 cut(s) 23, 47, 155, 438, 544
MaeIII GTNAC 2 cut(s) 319, 343
MalI GATC 3 cut(s) 183, 288, 450
MboI GATC 3 cut(s) 181, 286, 448
MboII GAAGA 5 cut(s) 155, 400, 458, 502, 512
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 2 cut(s) 251, 369
MnlI CCTC 5 cut(s) 10, 234, 469, 478, 526
MspR9I CCNGG 2 cut(s) 434, 463
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 2 cut(s) 434, 463
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 307, 421
NdeII GATC 3 cut(s) 181, 286, 448
NlaIII CATG 4 cut(s) 75, 188, 206, 424
NlaIV GGNNCC 2 cut(s) 61, 330
NruI TCGCGA 1 cut(s) 15
NspI RCATGY 2 cut(s) 206, 424
PaeI GCATGC 2 cut(s) 206, 424
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 3 cut(s) 176, 237, 536
Psp6I CCWGG 2 cut(s) 432, 461
PspFI CCCAGC 1 cut(s) 424
PspGI CCWGG 2 cut(s) 432, 461
PspN4I GGNNCC 2 cut(s) 61, 330
PspPI GGNCC 1 cut(s) 43
PsuI RGATCY 1 cut(s) 448
RruI TCGCGA 1 cut(s) 15
RsaI GTAC 2 cut(s) 232, 480
RsaNI GTAC 2 cut(s) 231, 479
Sau3AI GATC 3 cut(s) 181, 286, 448
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 434, 463
SduI GDGCHC 1 cut(s) 192
SetI ASST 6 cut(s) 39, 48, 101, 226, 262, 480
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 512
SinI GGWCC 1 cut(s) 43
SpeI ACTAGT 1 cut(s) 154
SphI GCATGC 2 cut(s) 206, 424
Sse9I AATT 2 cut(s) 251, 369
SsiI CCGC 1 cut(s) 110
SspI AATATT 1 cut(s) 246
SspMI CTAG 5 cut(s) 23, 47, 155, 438, 544
StyD4I CCNGG 2 cut(s) 432, 461
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 516
TaqI TCGA 1 cut(s) 235
TasI AATT 2 cut(s) 251, 369
TfiI GAWTC 3 cut(s) 176, 237, 536
TscAI CASTG 1 cut(s) 521
TspDTI ATGAA 1 cut(s) 104
TspRI CASTG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 1 cut(s) 251
XceI RCATGY 2 cut(s) 206, 424
XmaJI CCTAGG 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 5 cut(s) 23, 47, 155, 438, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.