Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003434.1

Orthogroup ID

OG0022373

Physical Location & Seq

Genomic Coordinates Forward (+)

11142 .. 14036

Gene Structure 2895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

atggatgtccggttcccgtactcgcctctggaggttgcgacgccgagctccgtccagttcggcatcctcagccccggcgagatcgtaattctccttcccactaggcaaatgtcggtgctggaggtcgaggatggccgttcaatgctgaacgggaagccggtgagaggcggcttgagtgaccctcggcttggtccgattgacaggcacaataggtgtgagacttgtgccaataacttgagcgagtgcccgggccatttcggccacattgagctcgccaagcctgtgttccacttcgggtttatgaagactctgctctctgtaatgcgctgcgaagatgttaagtttaaacaagctttgagaatcaagaagcctaaagataggctaaaaaagtttgtggatgcatgcaaaaacaagaccaagtgtgaaggtggtgatgaaattgatctgcagggctcaaaatccggtcaacctgtcaagcaaagtcggggtggctgtggtgctcagcagcccaagttctctatggctggtttggaactggttgcagagtacaaatcacaaaggaaacaatatgatgaggaacagcttcctgaaccagtggaaaggaaacaaatccttactgcagaaaaggttcttagcttattaaagaggataagtgatgaggactgccaattcttgggactgaaccctgaatatgctcgaccagattggatgattttacaagttcttcctattcctccaccagctgtgagacccccagtgatgatgagcagctctgccatgagtgaggatgatttaacacatcagttgtccatgattattcgccacaacgagaatttgaggaaacaggaaaaacatggttcagctgctcatatcatttcacagtttacacaaatcttgcaatactacatatccacatattttgacaatagcttgcctggactaccaaaggctgctcatggatcgacaaagaggcctattaaatcaatatgttgtaggcttaaggcaaagcatggccggattagaggaaacttgatggggaagagagtcgatttctcagcacggacagttattacaccagatccaaaccttagccttgatcaattaggagtaccatggagcattgctatgaatctcacatacacagagactgtgactccatttaataaagaagggttgaaggagcttgttgagtatgggccgcatcccccacctggactaactggtgcaaagtacatcatacgagatgatggccaaagaatcgatcttcgttacgtgaagaaagatatttatgttaatggattcttttaccaaacaaaaaggttgaaggagcttgttgagtatgggccgcatcccccacctggactaactggtgcaaagtacatcatacgagatgatggccaaagaatcgatcttcgttacgtgaagaaagatagtgatcatcatttggagcttggttataaggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

488

Amino Acids

55.03

Weight (kDa)

9.15

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	16 - 344	1.1e-86	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	346 - 427	6.2e-21	RNA polymerase Rpb1, domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022373)

Species	Orthologous Gene IDs
malus_domestica	MD02G1123300.v1.1 MD02G1126000.v1.1
rosa_multiflora	Rmu_sc0003434.1_g000004
rosa_samantha	Rh2DG124100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1458
AccB7I	CCANNNNNTGG	1 cut(s)	673
AciI	CCGC	3 cut(s)	168, 1199, 1346
AclWI	GGATC	2 cut(s)	967, 1073
AcoI	YGGCCR	5 cut(s)	133, 259, 1012, 1249, 1396
AcsI	RAATTY	1 cut(s)	832
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	5 cut(s)	20, 548, 1110, 1232, 1379
AfiI	CCNNNNNNNGG	5 cut(s)	164, 188, 673, 1211, 1358
AflII	CTTAAG	1 cut(s)	998
AgsI	TTSAA	3 cut(s)	141, 1177, 1324
AjnI	CCWGG	3 cut(s)	934, 1210, 1357
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AloI	GAACNNNNNNTCC	1 cut(s)	28
Alw21I	GWGCWC	3 cut(s)	50, 273, 502
Alw26I	GTCTC	3 cut(s)	212, 742, 1139
AlwI	GGATC	2 cut(s)	967, 1073
AlwNI	CAGNNNCTG	1 cut(s)	1148
Ama87I	CYCGRG	1 cut(s)	247
AoxI	GGCC	9 cut(s)	133, 250, 259, 971, 1012, 1196, 1249, 1343, 1396
ApeKI	GCWGC	5 cut(s)	327, 505, 768, 863, 950
ApoI	RAATTY	1 cut(s)	832
Asp700I	GAANNNNTTC	2 cut(s)	582, 627
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	4 cut(s)	191, 250, 1196, 1343
AsuC2I	CCSGG	3 cut(s)	75, 248, 249
AsuHPI	GGTGA	2 cut(s)	172, 443
AvaI	CYCGRG	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	248
BalI	TGGCCA	2 cut(s)	1251, 1398
BanII	GRGCYC	3 cut(s)	50, 273, 455
BarI	GAAGNNNNNNTAC	2 cut(s)	78, 110
BbsI	GAAGAC	1 cut(s)	311
Bbv12I	GWGCWC	3 cut(s)	50, 273, 502
BbvCI	CCTCAGC	1 cut(s)	68
BbvI	GCAGC	5 cut(s)	314, 517, 780, 850, 937
BccI	CCATC	4 cut(s)	125, 1027, 1241, 1388
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	3 cut(s)	936, 1212, 1359
BclI	TGATCA	2 cut(s)	1096, 1435
BcnI	CCSGG	3 cut(s)	75, 248, 249
BcoDI	GTCTC	3 cut(s)	212, 742, 1139
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	2 cut(s)	446, 618
BfrI	CTTAAG	1 cut(s)	998
BglI	GCCNNNNNGGC	1 cut(s)	258
BisI	GCNGC	8 cut(s)	169, 328, 506, 769, 864, 951, 1199, 1346
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	8 cut(s)	170, 329, 507, 770, 865, 952, 1200, 1347
Bme1390I	CCNGG	6 cut(s)	75, 248, 249, 936, 1212, 1359
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	247
BmgT120I	GGNCC	4 cut(s)	191, 250, 1196, 1343
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	6 cut(s)	75, 248, 249, 936, 1212, 1359
BmrI	ACTGGG	1 cut(s)	749
BmsI	GCATC	4 cut(s)	72, 388, 1210, 1357
BmuI	ACTGGG	1 cut(s)	749
BpiI	GAAGAC	1 cut(s)	311
BplI	GAGNNNNNCTC	2 cut(s)	166, 198
BpmI	CTGGAG	2 cut(s)	50, 140
Bpu10I	CCTNAGC	2 cut(s)	68, 1088
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	2 cut(s)	193, 256
BpuMI	CCSGG	3 cut(s)	75, 248, 249
Bsa29I	ATCGAT	2 cut(s)	1260, 1407
BsaAI	YACGTR	2 cut(s)	1273, 1420
BsaBI	GATNNNNATC	1 cut(s)	1434
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	742
BsaJI	CCNNGG	4 cut(s)	73, 182, 247, 1112
BsaWI	WCCGGW	2 cut(s)	9, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	1138, 1168
Bsc4I	CCNNNNNNNGG	5 cut(s)	164, 188, 673, 1211, 1358
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	6 cut(s)	55, 540, 593, 755, 1225, 1372
Bse3DI	GCAATG	1 cut(s)	1119
Bse8I	GATNNNNATC	1 cut(s)	1434
BseBI	CCWGG	3 cut(s)	936, 1212, 1359
BseCI	ATCGAT	2 cut(s)	1260, 1407
BseDI	CCNNGG	4 cut(s)	73, 182, 247, 1112
BseGI	GGATG	8 cut(s)	10, 63, 136, 403, 714, 793, 1201, 1348
BseJI	GATNNNNATC	1 cut(s)	1434
BseLI	CCNNNNNNNGG	5 cut(s)	164, 188, 673, 1211, 1358
BseMI	GCAATG	1 cut(s)	1119
BseMII	CTCAG	3 cut(s)	82, 515, 1068
BseNI	ACTGG	6 cut(s)	55, 540, 593, 755, 1225, 1372
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	5 cut(s)	314, 517, 780, 850, 937
BshFI	GGCC	9 cut(s)	135, 252, 261, 973, 1014, 1198, 1251, 1345, 1398
BshVI	ATCGAT	2 cut(s)	1260, 1407
BsiHKAI	GWGCWC	3 cut(s)	50, 273, 502
BsiHKCI	CYCGRG	1 cut(s)	247
BsiSI	CCGG	6 cut(s)	10, 75, 158, 248, 462, 1015
BslFI	GGGAC	1 cut(s)	690
BslI	CCNNNNNNNGG	5 cut(s)	164, 188, 673, 1211, 1358
BsmAI	GTCTC	3 cut(s)	212, 742, 1139
BsmFI	GGGAC	1 cut(s)	690
BsnI	GGCC	9 cut(s)	135, 252, 261, 973, 1014, 1198, 1251, 1345, 1398
Bso31I	GGTCTC	1 cut(s)	742
BsoBI	CYCGRG	1 cut(s)	247
Bsp1286I	GDGCHC	5 cut(s)	50, 248, 273, 455, 502
Bsp143I	GATC	8 cut(s)	81, 442, 959, 1078, 1096, 1261, 1408, 1435
Bsp1720I	GCTNAGC	1 cut(s)	501
Bsp19I	CCATGG	1 cut(s)	1112
BspACI	CCGC	3 cut(s)	168, 1199, 1346
BspANI	GGCC	9 cut(s)	135, 252, 261, 973, 1014, 1198, 1251, 1345, 1398
BspCNI	CTCAG	3 cut(s)	81, 514, 1067
BspDI	ATCGAT	2 cut(s)	1260, 1407
BspLI	GGNNCC	1 cut(s)	14
BspMAI	CTGCAG	2 cut(s)	450, 622
BspPI	GGATC	2 cut(s)	967, 1073
BspTI	CTTAAG	1 cut(s)	998
BspTNI	GGTCTC	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	1119
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	6 cut(s)	55, 540, 593, 755, 1225, 1372
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	4 cut(s)	73, 182, 247, 1112
BssMI	GATC	8 cut(s)	81, 442, 959, 1078, 1096, 1261, 1408, 1435
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	1112
Bst2UI	CCWGG	3 cut(s)	936, 1212, 1359
Bst4CI	ACNGT	3 cut(s)	882, 1066, 1150
Bst6I	CTCTTC	1 cut(s)	1034
BstACI	GRCGYC	1 cut(s)	41
BstAFI	CTTAAG	1 cut(s)	998
BstBAI	YACGTR	2 cut(s)	1273, 1420
BstC8I	GCNNGC	3 cut(s)	273, 403, 932
BstDEI	CTNAG	5 cut(s)	68, 501, 632, 1054, 1088
BstDSI	CCRYGG	1 cut(s)	1112
BstF5I	GGATG	8 cut(s)	10, 63, 136, 403, 714, 793, 1201, 1348
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	8 cut(s)	84, 445, 962, 1081, 1099, 1264, 1411, 1438
BstMAI	GTCTC	3 cut(s)	212, 742, 1139
BstMBI	GATC	8 cut(s)	81, 442, 959, 1078, 1096, 1261, 1408, 1435
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 258, 277
BstNI	CCWGG	3 cut(s)	936, 1212, 1359
BstNSI	RCATGY	1 cut(s)	405
BstSCI	CCNGG	6 cut(s)	73, 246, 247, 934, 1210, 1357
BstSFI	CTRYAG	2 cut(s)	446, 618
BstSLI	GKGCMC	1 cut(s)	248
BstV1I	GCAGC	5 cut(s)	314, 517, 780, 850, 937
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	1078
BstYI	RGATCY	1 cut(s)	1078
Bsu15I	ATCGAT	2 cut(s)	1260, 1407
BsuRI	GGCC	9 cut(s)	135, 252, 261, 973, 1014, 1198, 1251, 1345, 1398
BsuTUI	ATCGAT	2 cut(s)	1260, 1407
BtgI	CCRYGG	1 cut(s)	1112
BtsCI	GGATG	8 cut(s)	10, 63, 136, 403, 714, 793, 1201, 1348
BtsIMutI	CAGTG	2 cut(s)	600, 762
Cac8I	GCNNGC	3 cut(s)	273, 403, 932
CaiI	CAGNNNCTG	1 cut(s)	1148
CfoI	GCGC	1 cut(s)	327
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	4 cut(s)	191, 250, 1196, 1343
Cfr9I	CCCGGG	1 cut(s)	247
ClaI	ATCGAT	2 cut(s)	1260, 1407
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	5 cut(s)	19, 547, 1109, 1231, 1378
CspCI	CAANNNNNGTGG	2 cut(s)	901, 936
CviAII	CATG	7 cut(s)	402, 778, 811, 854, 956, 1010, 1113
CviQI	GTAC	5 cut(s)	19, 547, 1109, 1231, 1378
DdeI	CTNAG	5 cut(s)	68, 501, 632, 1054, 1088
DpnI	GATC	8 cut(s)	83, 444, 961, 1080, 1098, 1263, 1410, 1437
DpnII	GATC	8 cut(s)	81, 442, 959, 1078, 1096, 1261, 1408, 1435
DraI	TTTAAA	1 cut(s)	346
EaeI	YGGCCR	5 cut(s)	133, 259, 1012, 1249, 1396
Eam1104I	CTCTTC	1 cut(s)	1034
EarI	CTCTTC	1 cut(s)	1034
Ecl136II	GAGCTC	2 cut(s)	48, 271
Eco130I	CCWWGG	1 cut(s)	1112
Eco147I	AGGCCT	1 cut(s)	973
Eco24I	GRGCYC	3 cut(s)	50, 273, 455
Eco31I	GGTCTC	1 cut(s)	742
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	2 cut(s)	48, 271
Eco88I	CYCGRG	1 cut(s)	247
EcoICRI	GAGCTC	2 cut(s)	48, 271
EcoRII	CCWGG	3 cut(s)	934, 1210, 1357
EcoT14I	CCWWGG	1 cut(s)	1112
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	3 cut(s)	50, 273, 455
ErhI	CCWWGG	1 cut(s)	1112
FaeI	CATG	7 cut(s)	405, 781, 814, 857, 959, 1013, 1116
FaqI	GGGAC	1 cut(s)	690
FatI	CATG	7 cut(s)	401, 777, 810, 853, 955, 1009, 1112
FbaI	TGATCA	2 cut(s)	1096, 1435
Fnu4HI	GCNGC	8 cut(s)	169, 328, 506, 769, 864, 951, 1199, 1346
FokI	GGATG	8 cut(s)	17, 50, 143, 410, 721, 800, 1188, 1335
FriOI	GRGCYC	3 cut(s)	50, 273, 455
Fsp4HI	GCNGC	8 cut(s)	169, 328, 506, 769, 864, 951, 1199, 1346
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	8 cut(s)	169, 328, 506, 769, 864, 951, 1199, 1346
GsuI	CTGGAG	2 cut(s)	50, 140
HaeIII	GGCC	9 cut(s)	135, 252, 261, 973, 1014, 1198, 1251, 1345, 1398
HapII	CCGG	6 cut(s)	10, 75, 158, 248, 462, 1015
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	7 cut(s)	405, 781, 814, 857, 959, 1013, 1116
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	467
HindII	GTYRAC	1 cut(s)	467
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	8 cut(s)	307, 360, 1044, 1129, 1153, 1257, 1299, 1404
HpaII	CCGG	6 cut(s)	10, 75, 158, 248, 462, 1015
HphI	GGTGA	2 cut(s)	172, 443
Hpy166II	GTNNAC	2 cut(s)	467, 885
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	3 cut(s)	29, 364, 587
Hpy8I	GTNNAC	2 cut(s)	467, 885
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	5 cut(s)	104, 419, 1163, 1171, 1318
HpyCH4III	ACNGT	3 cut(s)	882, 1066, 1150
HpyCH4IV	ACGT	2 cut(s)	1272, 1419
HpyCH4V	TGCA	8 cut(s)	401, 405, 448, 542, 620, 898, 1226, 1373
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 258, 277
HpyF3I	CTNAG	5 cut(s)	68, 501, 632, 1054, 1088
HpySE526I	ACGT	2 cut(s)	1272, 1419
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	7 cut(s)	405, 781, 814, 857, 959, 1013, 1116
HspAI	GCGC	1 cut(s)	325
Ksp22I	TGATCA	2 cut(s)	1096, 1435
Kzo9I	GATC	8 cut(s)	81, 442, 959, 1078, 1096, 1261, 1408, 1435
LmnI	GCTCC	5 cut(s)	53, 1116, 1180, 1327, 1447
Lsp1109I	GCAGC	5 cut(s)	314, 517, 780, 850, 937
LweI	GCATC	4 cut(s)	72, 388, 1210, 1357
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	2 cut(s)	1272, 1419
MaeIII	GTNAC	4 cut(s)	176, 1150, 1268, 1415
MalI	GATC	8 cut(s)	83, 444, 961, 1080, 1098, 1263, 1410, 1437
MboI	GATC	8 cut(s)	81, 442, 959, 1078, 1096, 1261, 1408, 1435
MboII	GAAGA	8 cut(s)	316, 344, 716, 1051, 1256, 1288, 1403, 1435
MflI	RGATCY	1 cut(s)	1078
MhlI	GDGCHC	5 cut(s)	50, 248, 273, 455, 502
MlsI	TGGCCA	2 cut(s)	1251, 1398
MluCI	AATT	5 cut(s)	87, 438, 668, 832, 1100
MluNI	TGGCCA	2 cut(s)	1251, 1398
MlyI	GAGTC	3 cut(s)	301, 1053, 1147
Mox20I	TGGCCA	2 cut(s)	1251, 1398
Mph1103I	ATGCAT	1 cut(s)	403
MroXI	GAANNNNTTC	2 cut(s)	582, 627
MscI	TGGCCA	2 cut(s)	1251, 1398
MseI	TTAA	8 cut(s)	339, 345, 641, 794, 978, 999, 1161, 1293
MslI	CAYNNNNRTG	1 cut(s)	1124
Msp20I	TGGCCA	2 cut(s)	1251, 1398
MspA1I	CMGCKG	2 cut(s)	743, 863
MspCI	CTTAAG	1 cut(s)	998
MspI	CCGG	6 cut(s)	10, 75, 158, 248, 462, 1015
MspR9I	CCNGG	6 cut(s)	75, 248, 249, 936, 1212, 1359
MssI	GTTTAAAC	1 cut(s)	346
MvaI	CCWGG	3 cut(s)	936, 1212, 1359
MwoI	GCNNNNNNNGC	3 cut(s)	69, 258, 277
NciI	CCSGG	3 cut(s)	75, 248, 249
NcoI	CCATGG	1 cut(s)	1112
NdeII	GATC	8 cut(s)	81, 442, 959, 1078, 1096, 1261, 1408, 1435
NlaIII	CATG	7 cut(s)	405, 781, 814, 857, 959, 1013, 1116
NlaIV	GGNNCC	1 cut(s)	14
NmeAIII	GCCGAG	2 cut(s)	69, 163
NmuCI	GTSAC	2 cut(s)	176, 1150
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	1 cut(s)	405
PaeI	GCATGC	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	973
PdmI	GAANNNNTTC	2 cut(s)	582, 627
PfeI	GAWTC	5 cut(s)	360, 1129, 1257, 1299, 1404
PflMI	CCANNNNNTGG	1 cut(s)	673
PkrI	GCNGC	8 cut(s)	170, 329, 507, 770, 865, 952, 1200, 1347
PleI	GAGTC	3 cut(s)	301, 1052, 1147
PmeI	GTTTAAAC	1 cut(s)	346
PpsI	GAGTC	3 cut(s)	301, 1052, 1147
Ppu21I	YACGTR	2 cut(s)	1273, 1420
PsiI	TTATAA	1 cut(s)	1458
Psp124BI	GAGCTC	2 cut(s)	50, 273
Psp6I	CCWGG	3 cut(s)	934, 1210, 1357
PspGI	CCWGG	3 cut(s)	934, 1210, 1357
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	4 cut(s)	191, 250, 1196, 1343
PstI	CTGCAG	2 cut(s)	450, 622
PstNI	CAGNNNCTG	1 cut(s)	1148
PsuI	RGATCY	1 cut(s)	1078
PvuII	CAGCTG	2 cut(s)	743, 863
RsaI	GTAC	5 cut(s)	20, 548, 1110, 1232, 1379
RsaNI	GTAC	5 cut(s)	19, 547, 1109, 1231, 1378
RseI	CAYNNNNRTG	1 cut(s)	1124
SacI	GAGCTC	2 cut(s)	50, 273
SaqAI	TTAA	8 cut(s)	339, 345, 641, 794, 978, 999, 1161, 1293
SatI	GCNGC	8 cut(s)	169, 328, 506, 769, 864, 951, 1199, 1346
Sau3AI	GATC	8 cut(s)	81, 442, 959, 1078, 1096, 1261, 1408, 1435
Sau96I	GGNCC	4 cut(s)	191, 250, 1196, 1343
SchI	GAGTC	3 cut(s)	301, 1053, 1147
ScrFI	CCNGG	6 cut(s)	75, 248, 249, 936, 1212, 1359
SduI	GDGCHC	5 cut(s)	50, 248, 273, 455, 502
SfaNI	GCATC	4 cut(s)	72, 388, 1210, 1357
SfcI	CTRYAG	2 cut(s)	446, 618
SfiI	GGCCNNNNNGGCC	1 cut(s)	258
SinI	GGWCC	1 cut(s)	191
SmaI	CCCGGG	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	1124
SmlI	CTYRAG	3 cut(s)	172, 235, 998
SmoI	CTYRAG	3 cut(s)	172, 235, 998
SphI	GCATGC	1 cut(s)	405
SrfI	GCCCGGGC	1 cut(s)	249
Sse9I	AATT	5 cut(s)	87, 438, 668, 832, 1100
SseBI	AGGCCT	1 cut(s)	973
SsiI	CCGC	3 cut(s)	168, 1199, 1346
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	2 cut(s)	50, 273
StuI	AGGCCT	1 cut(s)	973
StyD4I	CCNGG	6 cut(s)	73, 246, 247, 934, 1210, 1357
StyI	CCWWGG	1 cut(s)	1112
TaaI	ACNGT	3 cut(s)	882, 1066, 1150
TaiI	ACGT	2 cut(s)	1275, 1422
TaqI	TCGA	6 cut(s)	126, 697, 962, 1047, 1260, 1407
TasI	AATT	5 cut(s)	87, 438, 668, 832, 1100
TatI	WGTACW	3 cut(s)	546, 1230, 1377
TauI	GCSGC	3 cut(s)	171, 1201, 1348
TfiI	GAWTC	5 cut(s)	360, 1129, 1257, 1299, 1404
Tru1I	TTAA	8 cut(s)	339, 345, 641, 794, 978, 999, 1161, 1293
Tru9I	TTAA	8 cut(s)	339, 345, 641, 794, 978, 999, 1161, 1293
TscAI	CASTG	2 cut(s)	600, 762
TseFI	GTSAC	2 cut(s)	176, 1150
TseI	GCWGC	5 cut(s)	327, 505, 768, 863, 950
Tsp45I	GTSAC	2 cut(s)	176, 1150
TspDTI	ATGAA	3 cut(s)	317, 450, 1142
TspGWI	ACGGA	2 cut(s)	40, 1075
TspMI	CCCGGG	1 cut(s)	247
TspRI	CASTG	2 cut(s)	600, 762
Van91I	CCANNNNNTGG	1 cut(s)	673
Vha464I	CTTAAG	1 cut(s)	998
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	832
XceI	RCATGY	1 cut(s)	405
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XmaI	CCCGGG	1 cut(s)	247
XmnI	GAANNNNTTC	2 cut(s)	582, 627
XspI	CTAG	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.