Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003452.1

Orthogroup ID

OG0031266

Physical Location & Seq

Genomic Coordinates Reverse (-)

52968 .. 56772

Gene Structure 3805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003452.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgcaagattgtttggttgagttccaaggaccactaacaccatcaaaagacaaaatgaaaaatcaccctgttctcaacaacaaagattcattgtccaacttggactcctccttgaaacccctcggatccgacccgacggagccggccgggtcctgcgactactccgatggaacctggatctacgacccgaatgcttctcccaagtacgacaacacctgcaaggagatcttcaagggctggaattgcatttccagcaacaaatccaacggtcgcgaactcatcaagtggagatggaagcctaagcactgtgatctcccgcagttcgatcccgctagcaccaccgaactggaatggcttgaaatcatggtctcggtagttcagtctccgctgcctccggcgtcagatctctcgccgttgttcctctcattcgtcaacaacaagctccgaattgatcaaaatctgagccaggctccgactctccaggcctattgcggcaacttagatcaagccctagcttctccgtcctctgcgacatttgcccaattgctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

183

Amino Acids

20.31

Weight (kDa)

4.97

Isoelectric Point (pI)

59.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031266)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003452.1_g000008
rosa_samantha	Rh6BG509100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	224
AccII	CGCG	1 cut(s)	273
AciI	CCGC	4 cut(s)	317, 330, 386, 492
AclWI	GGATC	4 cut(s)	120, 133, 185, 320
AcoI	YGGCCR	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	398
AfaI	GTAC	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	115, 232, 359
AjnI	CCWGG	3 cut(s)	173, 465, 480
AluBI	AGCT	2 cut(s)	442, 515
AluI	AGCT	2 cut(s)	442, 515
Alw26I	GTCTC	2 cut(s)	373, 387
AlwI	GGATC	4 cut(s)	120, 133, 185, 320
AoxI	GGCC	2 cut(s)	144, 483
ApeKI	GCWGC	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	29, 150
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	56
AsuNHI	GCTAGC	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	29, 150
BamHI	GGATCC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	375
BccI	CCATC	3 cut(s)	49, 161, 285
BceAI	ACGGC	1 cut(s)	397
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	3 cut(s)	175, 467, 482
BclI	TGATCA	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	373, 387
BfaI	CTAG	2 cut(s)	333, 512
BfuAI	ACCTGC	1 cut(s)	224
BglII	AGATCT	2 cut(s)	225, 403
BisI	GCNGC	2 cut(s)	389, 493
BlsI	GCNGC	2 cut(s)	390, 494
Bme1390I	CCNGG	4 cut(s)	148, 175, 467, 482
Bme18I	GGWCC	2 cut(s)	29, 150
BmgT120I	GGNCC	2 cut(s)	29, 150
BmiI	GGNNCC	5 cut(s)	127, 141, 151, 172, 471
BmrFI	CCNGG	4 cut(s)	148, 175, 467, 482
BmtI	GCTAGC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	454, 486
BpmI	CTGGAG	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	25, 121
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	3 cut(s)	175, 467, 482
BseDI	CCNNGG	2 cut(s)	25, 121
BseJI	GATNNNNATC	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	97
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	273
Bsh1285I	CGRYCG	2 cut(s)	147, 271
BshFI	GGCC	2 cut(s)	146, 485
BsiEI	CGRYCG	2 cut(s)	147, 271
BsiSI	CCGG	3 cut(s)	143, 147, 395
BsmAI	GTCTC	2 cut(s)	373, 387
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	146, 485
Bso31I	GGTCTC	1 cut(s)	373
Bsp143I	GATC	8 cut(s)	125, 177, 225, 310, 325, 403, 451, 502
Bsp68I	TCGCGA	1 cut(s)	273
BspACI	CCGC	4 cut(s)	317, 330, 386, 492
BspANI	GGCC	2 cut(s)	146, 485
BspCNI	CTCAG	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	5 cut(s)	127, 141, 151, 172, 471
BspMI	ACCTGC	1 cut(s)	224
BspOI	GCTAGC	1 cut(s)	336
BspPI	GGATC	4 cut(s)	120, 133, 185, 320
BspTNI	GGTCTC	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	25, 121
BssMI	GATC	8 cut(s)	125, 177, 225, 310, 325, 403, 451, 502
BssNI	GRCGYC	1 cut(s)	398
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	3 cut(s)	175, 467, 482
Bst4CI	ACNGT	2 cut(s)	269, 308
BstACI	GRCGYC	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	144, 334
BstDEI	CTNAG	3 cut(s)	300, 461, 499
BstFNI	CGCG	1 cut(s)	273
BstKTI	GATC	8 cut(s)	128, 180, 228, 313, 328, 406, 454, 505
BstMAI	GTCTC	2 cut(s)	373, 387
BstMBI	GATC	8 cut(s)	125, 177, 225, 310, 325, 403, 451, 502
BstMCI	CGRYCG	2 cut(s)	147, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 252, 536
BstNI	CCWGG	3 cut(s)	175, 467, 482
BstSCI	CCNGG	4 cut(s)	146, 173, 465, 480
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	375
BstX2I	RGATCY	4 cut(s)	125, 177, 225, 403
BstXI	CCANNNNNNTGG	1 cut(s)	346
BstYI	RGATCY	4 cut(s)	125, 177, 225, 403
BstZI	CGGCCG	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	146, 485
BtsIMutI	CAGTG	1 cut(s)	304
BtuMI	TCGCGA	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	144, 334
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	29, 150
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	364
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	3 cut(s)	300, 461, 499
DpnI	GATC	8 cut(s)	127, 179, 227, 312, 327, 405, 453, 504
DpnII	GATC	8 cut(s)	125, 177, 225, 310, 325, 403, 451, 502
EaeI	YGGCCR	1 cut(s)	144
EagI	CGGCCG	1 cut(s)	144
EclXI	CGGCCG	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	25
Eco147I	AGGCCT	1 cut(s)	485
Eco31I	GGTCTC	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	29, 150
Eco52I	CGGCCG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	150
EcoRII	CCWGG	3 cut(s)	173, 465, 480
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	1 cut(s)	367
FaiI	YATR	1 cut(s)	365
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	1 cut(s)	363
FauI	CCCGC	2 cut(s)	324, 337
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	2 cut(s)	389, 493
Fsp4HI	GCNGC	2 cut(s)	389, 493
FspBI	CTAG	2 cut(s)	333, 512
GluI	GCNGC	2 cut(s)	389, 493
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	146, 485
HapII	CCGG	3 cut(s)	143, 147, 395
HgaI	GACGC	1 cut(s)	387
Hin1I	GRCGYC	1 cut(s)	398
Hin1II	CATG	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	3 cut(s)	86, 104, 475
HpaII	CCGG	3 cut(s)	143, 147, 395
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	7 cut(s)	125, 130, 166, 403, 446, 462, 474
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	433
Hpy99I	CGWCG	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	269, 308
HpyCH4V	TGCA	3 cut(s)	4, 219, 246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 252, 536
HpyF3I	CTNAG	3 cut(s)	300, 461, 499
Hsp92I	GRCGYC	1 cut(s)	398
Hsp92II	CATG	1 cut(s)	367
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	8 cut(s)	125, 177, 225, 310, 325, 403, 451, 502
LmnI	GCTCC	3 cut(s)	139, 447, 475
Lsp1109I	GCAGC	1 cut(s)	375
MaeI	CTAG	2 cut(s)	333, 512
MalI	GATC	8 cut(s)	127, 179, 227, 312, 327, 405, 453, 504
MboI	GATC	8 cut(s)	125, 177, 225, 310, 325, 403, 451, 502
MboII	GAAGA	1 cut(s)	220
MfeI	CAATTG	1 cut(s)	542
MflI	RGATCY	4 cut(s)	125, 177, 225, 403
MluCI	AATT	3 cut(s)	241, 447, 542
MlyI	GAGTC	2 cut(s)	98, 469
MmeI	TCCRAC	4 cut(s)	120, 153, 288, 497
MnlI	CCTC	5 cut(s)	118, 131, 402, 431, 535
MroNI	GCCGGC	1 cut(s)	142
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	3 cut(s)	143, 147, 395
MspR9I	CCNGG	4 cut(s)	148, 175, 467, 482
MunI	CAATTG	1 cut(s)	542
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	3 cut(s)	175, 467, 482
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	243, 252, 536
NaeI	GCCGGC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	8 cut(s)	125, 177, 225, 310, 325, 403, 451, 502
NgoMIV	GCCGGC	1 cut(s)	142
NheI	GCTAGC	1 cut(s)	332
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	5 cut(s)	127, 141, 151, 172, 471
NruI	TCGCGA	1 cut(s)	273
PaqCI	CACCTGC	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	485
PctI	GAATGC	1 cut(s)	196
PdiI	GCCGGC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	390, 494
PleI	GAGTC	2 cut(s)	98, 469
PpsI	GAGTC	2 cut(s)	98, 469
PpuMI	RGGWCCY	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	150
Psp6I	CCWGG	3 cut(s)	173, 465, 480
PspGI	CCWGG	3 cut(s)	173, 465, 480
PspN4I	GGNNCC	5 cut(s)	127, 141, 151, 172, 471
PspPI	GGNCC	2 cut(s)	29, 150
PspPPI	RGGWCCY	1 cut(s)	150
PsuI	RGATCY	4 cut(s)	125, 177, 225, 403
RruI	TCGCGA	1 cut(s)	273
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SatI	GCNGC	2 cut(s)	389, 493
Sau3AI	GATC	8 cut(s)	125, 177, 225, 310, 325, 403, 451, 502
Sau96I	GGNCC	2 cut(s)	29, 150
SchI	GAGTC	2 cut(s)	98, 469
ScrFI	CCNGG	4 cut(s)	148, 175, 467, 482
SetI	ASST	4 cut(s)	176, 218, 444, 517
SinI	GGWCC	2 cut(s)	29, 150
Sse9I	AATT	3 cut(s)	241, 447, 542
SseBI	AGGCCT	1 cut(s)	485
SsiI	CCGC	4 cut(s)	317, 330, 386, 492
SspMI	CTAG	2 cut(s)	333, 512
StuI	AGGCCT	1 cut(s)	485
StyD4I	CCNGG	4 cut(s)	146, 173, 465, 480
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	269, 308
TaqI	TCGA	1 cut(s)	324
TasI	AATT	3 cut(s)	241, 447, 542
TauI	GCSGC	1 cut(s)	495
TfiI	GAWTC	1 cut(s)	86
TscAI	CASTG	1 cut(s)	311
TseI	GCWGC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	71, 78
TspGWI	ACGGA	2 cut(s)	152, 510
TspRI	CASTG	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	29, 150
XspI	CTAG	2 cut(s)	333, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.