Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0031266

Physical Location & Seq

Genomic Coordinates Forward (+)

70564635 .. 70567776

Gene Structure 3142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG509100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTCTCTTGAGCATTTAGATGATTGCTTTATCTGGGTATTAGAGTTTGATCTAATTCTCAAGGAAGGACAAAATTTGTGCTTGAGATATAAGGTGTTATTCATGATAAAATCTCTCCTTTTAAACTTCGAGAACTTCAAATGCAGCATTGCTAATGCAACCCGCTCCCTCAAATTCGAGAAAACCCCGGGATCCGACCTGACGGAGTCGGTCGGGTCCTGCGACTACTCTGATGGAGCCTGGATCTACGACCCTAATGCTTCTCCCAAGTACGACAACACCTACAAGGAGATCTTCAAGGGCTGGAATTGCATTTCCAGCAACAAATCCAACGGCTGCGAACTAGTCAAGTGGAGGTGGAAGCCTAGGCACTGTGATCTGGCGAATCTCCGACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

132

Amino Acids

15.38

Weight (kDa)

6.8

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	73 - 126	1.8e-12	PMR5 N terminal Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0031266)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003452.1_g000008
rosa_samantha	Rh6BG509100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	165
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	3 cut(s)	186, 199, 251
AcsI	RAATTY	2 cut(s)	73, 173
AfaI	GTAC	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	139, 298
AhlI	ACTAGT	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	186, 199, 251
Ama87I	CYCGRG	1 cut(s)	187
ApeKI	GCWGC	2 cut(s)	144, 336
ApoI	RAATTY	2 cut(s)	73, 173
AspA2I	CCTAGG	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	216
AsuC2I	CCSGG	2 cut(s)	188, 189
AvaI	CYCGRG	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	216
AvrII	CCTAGG	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	156, 323
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	1 cut(s)	349
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	1 cut(s)	241
BcnI	CCSGG	2 cut(s)	188, 189
BcoDI	GTCTC	1 cut(s)	9
BcuI	ACTAGT	1 cut(s)	343
BfaI	CTAG	2 cut(s)	344, 366
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	2 cut(s)	145, 337
BlnI	CCTAGG	1 cut(s)	365
BlsI	GCNGC	2 cut(s)	146, 338
Bme1390I	CCNGG	3 cut(s)	188, 189, 241
Bme18I	GGWCC	1 cut(s)	216
BmeT110I	CYCGRG	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	3 cut(s)	193, 217, 238
BmrFI	CCNGG	3 cut(s)	188, 189, 241
BpuEI	CTTGAG	3 cut(s)	29, 44, 103
BpuMI	CCSGG	2 cut(s)	188, 189
BsaJI	CCNNGG	3 cut(s)	186, 187, 365
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	241
BseDI	CCNNGG	3 cut(s)	186, 187, 365
BseMI	GCAATG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	156, 323
Bsh1285I	CGRYCG	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	187
Bsp143I	GATC	5 cut(s)	49, 191, 243, 291, 376
BspACI	CCGC	1 cut(s)	163
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	193, 217, 238
BspPI	GGATC	3 cut(s)	186, 199, 251
BsrBI	CCGCTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	147
BssECI	CCNNGG	3 cut(s)	186, 187, 365
BssMI	GATC	5 cut(s)	49, 191, 243, 291, 376
BssT1I	CCWWGG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	374
BstKTI	GATC	5 cut(s)	52, 194, 246, 294, 379
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	5 cut(s)	49, 191, 243, 291, 376
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	309, 318
BstNI	CCWGG	1 cut(s)	241
BstSCI	CCNGG	3 cut(s)	186, 187, 239
BstV1I	GCAGC	2 cut(s)	156, 323
BstX2I	RGATCY	3 cut(s)	191, 243, 291
BstYI	RGATCY	3 cut(s)	191, 243, 291
BtsIMutI	CAGTG	1 cut(s)	370
CciI	TCATGA	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	216
Cfr9I	CCCGGG	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	4 cut(s)	239, 303, 336, 364
CviKI_1	RGCY	4 cut(s)	239, 303, 336, 364
CviQI	GTAC	1 cut(s)	271
DpnI	GATC	5 cut(s)	51, 193, 245, 293, 378
DpnII	GATC	5 cut(s)	49, 191, 243, 291, 376
DraI	TTTAAA	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	1 cut(s)	106
FaiI	YATR	2 cut(s)	90, 104
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FatI	CATG	1 cut(s)	102
FauI	CCCGC	1 cut(s)	170
Fnu4HI	GCNGC	2 cut(s)	145, 337
Fsp4HI	GCNGC	2 cut(s)	145, 337
FspBI	CTAG	2 cut(s)	344, 366
GluI	GCNGC	2 cut(s)	145, 337
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	2 cut(s)	206, 385
HpaII	CCGG	1 cut(s)	188
Hpy188I	TCNGA	3 cut(s)	196, 232, 392
Hpy188III	TCNNGA	4 cut(s)	8, 103, 130, 178
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4V	TGCA	3 cut(s)	144, 158, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	309, 318
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	5 cut(s)	49, 191, 243, 291, 376
LmnI	GCTCC	2 cut(s)	170, 236
LpnPI	CCDG	9 cut(s)	19, 201, 212, 226, 232, 253, 289, 331, 365
Lsp1109I	GCAGC	2 cut(s)	156, 323
MaeI	CTAG	2 cut(s)	344, 366
MalI	GATC	5 cut(s)	51, 193, 245, 293, 378
MbiI	CCGCTC	1 cut(s)	165
MboI	GATC	5 cut(s)	49, 191, 243, 291, 376
MboII	GAAGA	1 cut(s)	286
MflI	RGATCY	3 cut(s)	191, 243, 291
MluCI	AATT	4 cut(s)	54, 73, 173, 307
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	2 cut(s)	219, 354
MnlI	CCTC	2 cut(s)	179, 348
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	3 cut(s)	188, 189, 241
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	309, 318
NciI	CCSGG	2 cut(s)	188, 189
NdeII	GATC	5 cut(s)	49, 191, 243, 291, 376
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	3 cut(s)	193, 217, 238
PagI	TCATGA	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	385
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	146, 338
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	3 cut(s)	193, 217, 238
PspPI	GGNCC	1 cut(s)	216
PspPPI	RGGWCCY	1 cut(s)	216
PsuI	RGATCY	3 cut(s)	191, 243, 291
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	2 cut(s)	145, 337
Sau3AI	GATC	5 cut(s)	49, 191, 243, 291, 376
Sau96I	GGNCC	1 cut(s)	216
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	3 cut(s)	188, 189, 241
SetI	ASST	4 cut(s)	96, 201, 284, 359
SinI	GGWCC	1 cut(s)	216
SmaI	CCCGGG	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	3 cut(s)	8, 59, 82
SmoI	CTYRAG	3 cut(s)	8, 59, 82
SpeI	ACTAGT	1 cut(s)	343
Sse9I	AATT	4 cut(s)	54, 73, 173, 307
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	2 cut(s)	344, 366
StyD4I	CCNGG	3 cut(s)	186, 187, 239
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	129, 177
TaqII	GACCGA	1 cut(s)	199
TasI	AATT	4 cut(s)	54, 73, 173, 307
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	1 cut(s)	377
TseI	GCWGC	2 cut(s)	144, 336
TspDTI	ATGAA	1 cut(s)	91
TspGWI	ACGGA	1 cut(s)	218
TspMI	CCCGGG	1 cut(s)	187
TspRI	CASTG	1 cut(s)	377
Tth111I	GACNNNGTC	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	216
XapI	RAATTY	2 cut(s)	73, 173
XmaI	CCCGGG	1 cut(s)	187
XmaJI	CCTAGG	1 cut(s)	365
XspI	CTAG	2 cut(s)	344, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.