Rmu_sc0003452.1_g000008

Protein trichome birefringence-like 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003452.1
OG0031266
Physical Location & Seq
Reverse (-)
52968 .. 56772
3805 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 552 bp
atgcaagattgtttggttgagttccaaggaccactaacaccatcaaaagacaaaatgaaaaatcaccctgttctcaacaacaaagattcattgtccaacttggactcctccttgaaacccctcggatccgacccgacggagccggccgggtcctgcgactactccgatggaacctggatctacgacccgaatgcttctcccaagtacgacaacacctgcaaggagatcttcaagggctggaattgcatttccagcaacaaatccaacggtcgcgaactcatcaagtggagatggaagcctaagcactgtgatctcccgcagttcgatcccgctagcaccaccgaactggaatggcttgaaatcatggtctcggtagttcagtctccgctgcctccggcgtcagatctctcgccgttgttcctctcattcgtcaacaacaagctccgaattgatcaaaatctgagccaggctccgactctccaggcctattgcggcaacttagatcaagccctagcttctccgtcctctgcgacatttgcccaattgctttag

Protein Analysis

183

Amino Acids

20.31

Weight (kDa)

4.97

Isoelectric Point (pI)

59.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 51 - 104 4e-15 PMR5 N terminal Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031266)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003452.1_g000008
rosa_samantha Rh6BG509100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 224
Acc36I ACCTGC 1 cut(s) 224
AccII CGCG 1 cut(s) 273
AciI CCGC 4 cut(s) 317, 330, 386, 492
AclWI GGATC 4 cut(s) 120, 133, 185, 320
AcoI YGGCCR 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 1 cut(s) 206
AgsI TTSAA 3 cut(s) 115, 232, 359
AjnI CCWGG 3 cut(s) 173, 465, 480
AluBI AGCT 2 cut(s) 442, 515
AluI AGCT 2 cut(s) 442, 515
Alw26I GTCTC 2 cut(s) 373, 387
AlwI GGATC 4 cut(s) 120, 133, 185, 320
AoxI GGCC 2 cut(s) 144, 483
ApeKI GCWGC 1 cut(s) 388
AspS9I GGNCC 2 cut(s) 29, 150
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 56
AsuNHI GCTAGC 1 cut(s) 332
AvaII GGWCC 2 cut(s) 29, 150
BamHI GGATCC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 375
BccI CCATC 3 cut(s) 49, 161, 285
BceAI ACGGC 1 cut(s) 397
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 3 cut(s) 175, 467, 482
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 373, 387
BfaI CTAG 2 cut(s) 333, 512
BfuAI ACCTGC 1 cut(s) 224
BglII AGATCT 2 cut(s) 225, 403
BisI GCNGC 2 cut(s) 389, 493
BlsI GCNGC 2 cut(s) 390, 494
Bme1390I CCNGG 4 cut(s) 148, 175, 467, 482
Bme18I GGWCC 2 cut(s) 29, 150
BmgT120I GGNCC 2 cut(s) 29, 150
BmiI GGNNCC 5 cut(s) 127, 141, 151, 172, 471
BmrFI CCNGG 4 cut(s) 148, 175, 467, 482
BmtI GCTAGC 1 cut(s) 336
BplI GAGNNNNNCTC 2 cut(s) 454, 486
BpmI CTGGAG 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 148
BsaBI GATNNNNATC 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 373
BsaJI CCNNGG 2 cut(s) 25, 121
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bse118I RCCGGY 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 3 cut(s) 175, 467, 482
BseDI CCNNGG 2 cut(s) 25, 121
BseJI GATNNNNATC 1 cut(s) 456
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 97
BseX3I CGGCCG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 273
Bsh1285I CGRYCG 2 cut(s) 147, 271
BshFI GGCC 2 cut(s) 146, 485
BsiEI CGRYCG 2 cut(s) 147, 271
BsiSI CCGG 3 cut(s) 143, 147, 395
BsmAI GTCTC 2 cut(s) 373, 387
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 2 cut(s) 146, 485
Bso31I GGTCTC 1 cut(s) 373
Bsp143I GATC 8 cut(s) 125, 177, 225, 310, 325, 403, 451, 502
Bsp68I TCGCGA 1 cut(s) 273
BspACI CCGC 4 cut(s) 317, 330, 386, 492
BspANI GGCC 2 cut(s) 146, 485
BspCNI CTCAG 1 cut(s) 453
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 5 cut(s) 127, 141, 151, 172, 471
BspMI ACCTGC 1 cut(s) 224
BspOI GCTAGC 1 cut(s) 336
BspPI GGATC 4 cut(s) 120, 133, 185, 320
BspTNI GGTCTC 1 cut(s) 373
BsrFI RCCGGY 1 cut(s) 142
BsrI ACTGG 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 25, 121
BssMI GATC 8 cut(s) 125, 177, 225, 310, 325, 403, 451, 502
BssNI GRCGYC 1 cut(s) 398
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 3 cut(s) 175, 467, 482
Bst4CI ACNGT 2 cut(s) 269, 308
BstACI GRCGYC 1 cut(s) 398
BstC8I GCNNGC 2 cut(s) 144, 334
BstDEI CTNAG 3 cut(s) 300, 461, 499
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 8 cut(s) 128, 180, 228, 313, 328, 406, 454, 505
BstMAI GTCTC 2 cut(s) 373, 387
BstMBI GATC 8 cut(s) 125, 177, 225, 310, 325, 403, 451, 502
BstMCI CGRYCG 2 cut(s) 147, 271
BstMWI GCNNNNNNNGC 3 cut(s) 243, 252, 536
BstNI CCWGG 3 cut(s) 175, 467, 482
BstSCI CCNGG 4 cut(s) 146, 173, 465, 480
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 375
BstX2I RGATCY 4 cut(s) 125, 177, 225, 403
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 4 cut(s) 125, 177, 225, 403
BstZI CGGCCG 1 cut(s) 144
BsuRI GGCC 2 cut(s) 146, 485
BtsIMutI CAGTG 1 cut(s) 304
BtuMI TCGCGA 1 cut(s) 273
BveI ACCTGC 1 cut(s) 224
Cac8I GCNNGC 2 cut(s) 144, 334
Cfr10I RCCGGY 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 29, 150
CseI GACGC 1 cut(s) 387
Csp6I GTAC 1 cut(s) 205
CviAII CATG 1 cut(s) 364
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 3 cut(s) 300, 461, 499
DpnI GATC 8 cut(s) 127, 179, 227, 312, 327, 405, 453, 504
DpnII GATC 8 cut(s) 125, 177, 225, 310, 325, 403, 451, 502
EaeI YGGCCR 1 cut(s) 144
EagI CGGCCG 1 cut(s) 144
EclXI CGGCCG 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 25
Eco147I AGGCCT 1 cut(s) 485
Eco31I GGTCTC 1 cut(s) 373
Eco47I GGWCC 2 cut(s) 29, 150
Eco52I CGGCCG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 150
EcoRII CCWGG 3 cut(s) 173, 465, 480
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 1 cut(s) 367
FaiI YATR 1 cut(s) 365
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 1 cut(s) 363
FauI CCCGC 2 cut(s) 324, 337
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 2 cut(s) 389, 493
Fsp4HI GCNGC 2 cut(s) 389, 493
FspBI CTAG 2 cut(s) 333, 512
GluI GCNGC 2 cut(s) 389, 493
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 2 cut(s) 146, 485
HapII CCGG 3 cut(s) 143, 147, 395
HgaI GACGC 1 cut(s) 387
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 1 cut(s) 367
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 3 cut(s) 86, 104, 475
HpaII CCGG 3 cut(s) 143, 147, 395
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 7 cut(s) 125, 130, 166, 403, 446, 462, 474
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 1 cut(s) 433
Hpy99I CGWCG 1 cut(s) 139
HpyCH4III ACNGT 2 cut(s) 269, 308
HpyCH4V TGCA 3 cut(s) 4, 219, 246
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 252, 536
HpyF3I CTNAG 3 cut(s) 300, 461, 499
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 1 cut(s) 367
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 8 cut(s) 125, 177, 225, 310, 325, 403, 451, 502
LmnI GCTCC 3 cut(s) 139, 447, 475
Lsp1109I GCAGC 1 cut(s) 375
MaeI CTAG 2 cut(s) 333, 512
MalI GATC 8 cut(s) 127, 179, 227, 312, 327, 405, 453, 504
MboI GATC 8 cut(s) 125, 177, 225, 310, 325, 403, 451, 502
MboII GAAGA 1 cut(s) 220
MfeI CAATTG 1 cut(s) 542
MflI RGATCY 4 cut(s) 125, 177, 225, 403
MluCI AATT 3 cut(s) 241, 447, 542
MlyI GAGTC 2 cut(s) 98, 469
MmeI TCCRAC 4 cut(s) 120, 153, 288, 497
MnlI CCTC 5 cut(s) 118, 131, 402, 431, 535
MroNI GCCGGC 1 cut(s) 142
MspA1I CMGCKG 1 cut(s) 388
MspI CCGG 3 cut(s) 143, 147, 395
MspR9I CCNGG 4 cut(s) 148, 175, 467, 482
MunI CAATTG 1 cut(s) 542
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 3 cut(s) 175, 467, 482
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 3 cut(s) 243, 252, 536
NaeI GCCGGC 1 cut(s) 144
NciI CCSGG 1 cut(s) 148
NdeII GATC 8 cut(s) 125, 177, 225, 310, 325, 403, 451, 502
NgoMIV GCCGGC 1 cut(s) 142
NheI GCTAGC 1 cut(s) 332
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 5 cut(s) 127, 141, 151, 172, 471
NruI TCGCGA 1 cut(s) 273
PaqCI CACCTGC 1 cut(s) 224
PceI AGGCCT 1 cut(s) 485
PctI GAATGC 1 cut(s) 196
PdiI GCCGGC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 390, 494
PleI GAGTC 2 cut(s) 98, 469
PpsI GAGTC 2 cut(s) 98, 469
PpuMI RGGWCCY 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 150
Psp6I CCWGG 3 cut(s) 173, 465, 480
PspGI CCWGG 3 cut(s) 173, 465, 480
PspN4I GGNNCC 5 cut(s) 127, 141, 151, 172, 471
PspPI GGNCC 2 cut(s) 29, 150
PspPPI RGGWCCY 1 cut(s) 150
PsuI RGATCY 4 cut(s) 125, 177, 225, 403
RruI TCGCGA 1 cut(s) 273
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SatI GCNGC 2 cut(s) 389, 493
Sau3AI GATC 8 cut(s) 125, 177, 225, 310, 325, 403, 451, 502
Sau96I GGNCC 2 cut(s) 29, 150
SchI GAGTC 2 cut(s) 98, 469
ScrFI CCNGG 4 cut(s) 148, 175, 467, 482
SetI ASST 4 cut(s) 176, 218, 444, 517
SinI GGWCC 2 cut(s) 29, 150
Sse9I AATT 3 cut(s) 241, 447, 542
SseBI AGGCCT 1 cut(s) 485
SsiI CCGC 4 cut(s) 317, 330, 386, 492
SspMI CTAG 2 cut(s) 333, 512
StuI AGGCCT 1 cut(s) 485
StyD4I CCNGG 4 cut(s) 146, 173, 465, 480
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 2 cut(s) 269, 308
TaqI TCGA 1 cut(s) 324
TasI AATT 3 cut(s) 241, 447, 542
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 1 cut(s) 86
TscAI CASTG 1 cut(s) 311
TseI GCWGC 1 cut(s) 388
TspDTI ATGAA 2 cut(s) 71, 78
TspGWI ACGGA 2 cut(s) 152, 510
TspRI CASTG 1 cut(s) 311
VpaK11BI GGWCC 2 cut(s) 29, 150
XspI CTAG 2 cut(s) 333, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.