Rmu_sc0003465.1_g000044

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003465.1
OG0025563
Physical Location & Seq
Reverse (-)
186782 .. 198495
11714 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1155 bp
atgctgagtgcaatatcaaaagaagagttcctcttccttgttaagaagtattatgatgttctcattgttgcactactgttttctatcggagttgcatttttcgtctctaaattagcatggagaaaggtcacaggttccagaggtcacatccctggccggttggggttaccctttataggtgaaaccatttcttttatgtcagcaaccaatagcacaagaggatgctatgattttatcagattccggcgaatatggtatgggaagtggttcaagacgagaatttttggcaagatccatgtgtttgttccgagtacagagggtgcaaaaatgatattttctaatgattttgctaagttcaacaaaggatatgtgaaatcaatggcagattgtattggagataaaagcttgctctgtgtaccacatgagaaccataaaagaataaggcgcttattatcagatcctttctccatgaattctttatcttcgttcattgagaaattcgatagaatgctgtgtcagaagctgaagaaactagaacaaggtgggaaaagcttttcggtgcttgacttcagtatgaggatgacatttgatgcgatgtgctgcatgctaatgagtgtcatggatgagcccttgctaaggcagcttgagaaagactgcactgcagtctcggatggaatcttatctgttcctgtcatgattccaggcactagatattacaaaggcatcaagcccagaaatgaagagaaggaagagagctttccaacgataccttatgtccgtcgccggatgaaggagttatggccggaagaaggtgaagaggtcagagagggagaaagaatcagggagagagagagttatctggtgaccaccactgcatatattgatgccaccaatctcaagcgtccaaaactggctgctccacccaaagaacaggctggcaagacaccgaaccggccaccagaagaggcagaaaattccctgcccagttcaaacccattcagaccaccgttgaccaccatattttgtcaccatcaaggccttgatttcagattctgggaaccggaaaagttactcccggaaccgatcgaaaagcacccgaaccgccttccagaagctgctgcaccttggaccgccgcctgcctttttcaattttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

384

Amino Acids

44.26

Weight (kDa)

9.26

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 55 - 206 1e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025563)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8157436.1_g000001 Rmu_sc0003465.1_g000044
rosa_samantha Rh2AG332900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 1102, 1131, 1134
AclWI GGATC 2 cut(s) 286, 452
AcoI YGGCCR 3 cut(s) 154, 800, 953
AcsI RAATTY 4 cut(s) 279, 472, 497, 973
AcuI CTGAAG 2 cut(s) 545, 553
AfaI GTAC 2 cut(s) 313, 417
AfiI CCNNNNNNNGG 4 cut(s) 176, 636, 790, 809
AgsI TTSAA 4 cut(s) 271, 358, 990, 1148
AjnI CCWGG 2 cut(s) 151, 700
AluBI AGCT 6 cut(s) 405, 523, 552, 643, 756, 1115
AluI AGCT 6 cut(s) 405, 523, 552, 643, 756, 1115
Alw26I GTCTC 2 cut(s) 109, 670
AlwI GGATC 2 cut(s) 286, 452
AlwNI CAGNNNCTG 3 cut(s) 523, 1053, 1115
AoxI GGCC 4 cut(s) 154, 800, 953, 1036
ApeKI GCWGC 5 cut(s) 600, 640, 914, 1115, 1118
ApoI RAATTY 4 cut(s) 279, 472, 497, 973
Asp700I GAANNNNTTC 1 cut(s) 266
AspLEI GCGC 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 1128
AsuC2I CCSGG 1 cut(s) 1076
AsuHPI GGTGA 4 cut(s) 191, 824, 874, 1019
AvaII GGWCC 1 cut(s) 1128
BanII GRGCYC 1 cut(s) 630
BbvI GCAGC 5 cut(s) 587, 652, 901, 1102, 1105
BccI CCATC 2 cut(s) 665, 1038
BciT130I CCWGG 2 cut(s) 153, 702
BcnI CCSGG 1 cut(s) 1076
BcoDI GTCTC 2 cut(s) 109, 670
BfaI CTAG 2 cut(s) 533, 708
BfmI CTRYAG 1 cut(s) 660
BfoI RGCGCY 1 cut(s) 448
BisI GCNGC 6 cut(s) 601, 641, 915, 1116, 1119, 1134
BlsI GCNGC 6 cut(s) 602, 642, 916, 1117, 1120, 1135
Bme1390I CCNGG 3 cut(s) 153, 702, 1076
Bme18I GGWCC 1 cut(s) 1128
BmgT120I GGNCC 1 cut(s) 1128
BmiI GGNNCC 3 cut(s) 136, 1059, 1080
BmrFI CCNGG 3 cut(s) 153, 702, 1076
BmrI ACTGGG 1 cut(s) 978
BmsI GCATC 4 cut(s) 212, 580, 732, 874
BmuI ACTGGG 1 cut(s) 978
Bpu10I CCTNAGC 1 cut(s) 635
BpuEI CTTGAG 2 cut(s) 665, 881
BpuMI CCSGG 1 cut(s) 1076
BsaJI CCNNGG 2 cut(s) 151, 1124
BsaWI WCCGGW 1 cut(s) 1060
Bsc4I CCNNNNNNNGG 4 cut(s) 176, 636, 790, 809
Bse118I RCCGGY 2 cut(s) 156, 951
Bse1I ACTGG 2 cut(s) 915, 984
BseBI CCWGG 2 cut(s) 153, 702
BseDI CCNNGG 2 cut(s) 151, 1124
BseGI GGATG 6 cut(s) 147, 227, 585, 628, 676, 792
BseLI CCNNNNNNNGG 4 cut(s) 176, 636, 790, 809
BseNI ACTGG 2 cut(s) 915, 984
BseXI GCAGC 5 cut(s) 587, 652, 901, 1102, 1105
BsgI GTGCAG 2 cut(s) 640, 1104
Bsh1285I CGRYCG 1 cut(s) 1086
BshFI GGCC 4 cut(s) 156, 802, 955, 1038
BsiEI CGRYCG 1 cut(s) 1086
BsiSI CCGG 7 cut(s) 157, 244, 784, 803, 952, 1061, 1076
BslI CCNNNNNNNGG 4 cut(s) 176, 636, 790, 809
BsmAI GTCTC 2 cut(s) 109, 670
BsmBI CGTCTC 1 cut(s) 109
BsmI GAATGC 1 cut(s) 513
BsnI GGCC 4 cut(s) 156, 802, 955, 1038
Bsp1286I GDGCHC 1 cut(s) 630
Bsp143I GATC 3 cut(s) 291, 457, 1083
BspACI CCGC 3 cut(s) 1102, 1131, 1134
BspANI GGCC 4 cut(s) 156, 802, 955, 1038
BspHI TCATGA 1 cut(s) 693
BspLI GGNNCC 3 cut(s) 136, 1059, 1080
BspMAI CTGCAG 1 cut(s) 664
BspPI GGATC 2 cut(s) 286, 452
BsrFI RCCGGY 2 cut(s) 156, 951
BsrI ACTGG 2 cut(s) 915, 984
BssAI RCCGGY 2 cut(s) 156, 951
BssECI CCNNGG 2 cut(s) 151, 1124
BssMI GATC 3 cut(s) 291, 457, 1083
BssT1I CCWWGG 1 cut(s) 1124
Bst2UI CCWGG 2 cut(s) 153, 702
Bst4CI ACNGT 2 cut(s) 78, 1008
Bst6I CTCTTC 6 cut(s) 18, 38, 735, 744, 810, 957
BstC8I GCNNGC 4 cut(s) 407, 605, 937, 1138
BstDEI CTNAG 3 cut(s) 5, 351, 635
BstEII GGTNACC 2 cut(s) 165, 862
BstENI CCTNNNNNAGG 1 cut(s) 634
BstF5I GGATG 6 cut(s) 147, 227, 585, 628, 676, 792
BstH2I RGCGCY 1 cut(s) 448
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 3 cut(s) 294, 460, 1086
BstMAI GTCTC 2 cut(s) 109, 670
BstMBI GATC 3 cut(s) 291, 457, 1083
BstMCI CGRYCG 1 cut(s) 1086
BstMWI GCNNNNNNNGC 1 cut(s) 640
BstNI CCWGG 2 cut(s) 153, 702
BstNSI RCATGY 1 cut(s) 607
BstPI GGTNACC 2 cut(s) 165, 862
BstSCI CCNGG 3 cut(s) 151, 700, 1074
BstSFI CTRYAG 1 cut(s) 660
BstV1I GCAGC 5 cut(s) 587, 652, 901, 1102, 1105
BstX2I RGATCY 2 cut(s) 291, 457
BstYI RGATCY 2 cut(s) 291, 457
BsuRI GGCC 4 cut(s) 156, 802, 955, 1038
BtgZI GCGATG 1 cut(s) 608
BtsCI GGATG 6 cut(s) 147, 227, 585, 628, 676, 792
BtsI GCAGTG 2 cut(s) 657, 870
BtsIMutI CAGTG 2 cut(s) 657, 870
Cac8I GCNNGC 4 cut(s) 407, 605, 937, 1138
CaiI CAGNNNCTG 3 cut(s) 523, 1053, 1115
CciI TCATGA 1 cut(s) 693
CfoI GCGC 1 cut(s) 447
Cfr10I RCCGGY 2 cut(s) 156, 951
Cfr13I GGNCC 1 cut(s) 1128
CseI GACGC 1 cut(s) 890
Csp6I GTAC 2 cut(s) 312, 416
CviAII CATG 7 cut(s) 117, 296, 422, 469, 604, 619, 694
CviQI GTAC 2 cut(s) 312, 416
DdeI CTNAG 3 cut(s) 5, 351, 635
DpnI GATC 3 cut(s) 293, 459, 1085
DpnII GATC 3 cut(s) 291, 457, 1083
EaeI YGGCCR 3 cut(s) 154, 800, 953
Eam1104I CTCTTC 6 cut(s) 18, 38, 735, 744, 810, 957
EarI CTCTTC 6 cut(s) 18, 38, 735, 744, 810, 957
Eco130I CCWWGG 1 cut(s) 1124
Eco147I AGGCCT 1 cut(s) 1038
Eco24I GRGCYC 1 cut(s) 630
Eco47I GGWCC 1 cut(s) 1128
Eco57I CTGAAG 2 cut(s) 545, 553
Eco91I GGTNACC 2 cut(s) 165, 862
EcoNI CCTNNNNNAGG 1 cut(s) 634
EcoO65I GGTNACC 2 cut(s) 165, 862
EcoRI GAATTC 1 cut(s) 472
EcoRII CCWGG 2 cut(s) 151, 700
EcoT14I CCWWGG 1 cut(s) 1124
EcoT38I GRGCYC 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 1124
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 7 cut(s) 120, 299, 425, 472, 607, 622, 697
FatI CATG 7 cut(s) 116, 295, 421, 468, 603, 618, 693
Fnu4HI GCNGC 6 cut(s) 601, 641, 915, 1116, 1119, 1134
FokI GGATG 6 cut(s) 134, 234, 592, 635, 683, 799
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 6 cut(s) 601, 641, 915, 1116, 1119, 1134
FspBI CTAG 2 cut(s) 533, 708
GlaI GCGC 1 cut(s) 446
GluI GCNGC 6 cut(s) 601, 641, 915, 1116, 1119, 1134
HaeII RGCGCY 1 cut(s) 448
HaeIII GGCC 4 cut(s) 156, 802, 955, 1038
HapII CCGG 7 cut(s) 157, 244, 784, 803, 952, 1061, 1076
HgaI GACGC 1 cut(s) 890
HhaI GCGC 1 cut(s) 447
Hin1II CATG 7 cut(s) 120, 299, 425, 472, 607, 622, 697
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HincII GTYRAC 1 cut(s) 1011
HindII GTYRAC 1 cut(s) 1011
HindIII AAGCTT 2 cut(s) 403, 550
HinfI GANTC 5 cut(s) 240, 675, 697, 837, 1050
HpaII CCGG 7 cut(s) 157, 244, 784, 803, 952, 1061, 1076
HphI GGTGA 4 cut(s) 191, 824, 874, 1019
Hpy166II GTNNAC 2 cut(s) 416, 1011
Hpy188I TCNGA 9 cut(s) 89, 239, 309, 457, 519, 670, 824, 1001, 1049
Hpy188III TCNNGA 4 cut(s) 138, 271, 694, 1109
Hpy8I GTNNAC 2 cut(s) 416, 1011
Hpy99I CGWCG 1 cut(s) 783
HpyAV CCTTC 4 cut(s) 739, 784, 803, 1115
HpyCH4III ACNGT 2 cut(s) 78, 1008
HpyCH4V TGCA 9 cut(s) 11, 71, 95, 323, 603, 657, 662, 875, 1121
HpyF10VI GCNNNNNNNGC 1 cut(s) 640
HpyF3I CTNAG 3 cut(s) 5, 351, 635
Hsp92II CATG 7 cut(s) 120, 299, 425, 472, 607, 622, 697
HspAI GCGC 1 cut(s) 445
Kzo9I GATC 3 cut(s) 291, 457, 1083
LmnI GCTCC 1 cut(s) 922
Lsp1109I GCAGC 5 cut(s) 587, 652, 901, 1102, 1105
LweI GCATC 4 cut(s) 212, 580, 732, 874
MaeI CTAG 2 cut(s) 533, 708
MaeIII GTNAC 6 cut(s) 127, 143, 165, 862, 1025, 1068
MalI GATC 3 cut(s) 293, 459, 1085
MboI GATC 3 cut(s) 291, 457, 1083
MboII GAAGA 9 cut(s) 25, 35, 474, 538, 752, 761, 818, 827, 974
MflI RGATCY 2 cut(s) 291, 457
MhlI GDGCHC 1 cut(s) 630
MluCI AATT 6 cut(s) 110, 279, 472, 497, 973, 1148
MmeI TCCRAC 1 cut(s) 785
MnlI CCTC 8 cut(s) 41, 134, 212, 310, 570, 811, 820, 958
MroXI GAANNNNTTC 1 cut(s) 266
MseI TTAA 2 cut(s) 42, 1153
MslI CAYNNNNRTG 1 cut(s) 608
MspI CCGG 7 cut(s) 157, 244, 784, 803, 952, 1061, 1076
MspR9I CCNGG 3 cut(s) 153, 702, 1076
Mva1269I GAATGC 1 cut(s) 513
MvaI CCWGG 2 cut(s) 153, 702
MwoI GCNNNNNNNGC 1 cut(s) 640
NciI CCSGG 1 cut(s) 1076
NdeII GATC 3 cut(s) 291, 457, 1083
NlaIII CATG 7 cut(s) 120, 299, 425, 472, 607, 622, 697
NlaIV GGNNCC 3 cut(s) 136, 1059, 1080
NmuCI GTSAC 4 cut(s) 127, 143, 862, 1025
NspI RCATGY 1 cut(s) 607
PaeI GCATGC 1 cut(s) 607
PagI TCATGA 1 cut(s) 693
PceI AGGCCT 1 cut(s) 1038
PctI GAATGC 1 cut(s) 513
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 5 cut(s) 240, 675, 697, 837, 1050
PfoI TCCNGGA 1 cut(s) 1074
PkrI GCNGC 6 cut(s) 602, 642, 916, 1117, 1120, 1135
Ple19I CGATCG 1 cut(s) 1086
Psp6I CCWGG 2 cut(s) 151, 700
PspEI GGTNACC 2 cut(s) 165, 862
PspGI CCWGG 2 cut(s) 151, 700
PspN4I GGNNCC 3 cut(s) 136, 1059, 1080
PspPI GGNCC 1 cut(s) 1128
PstI CTGCAG 1 cut(s) 664
PstNI CAGNNNCTG 3 cut(s) 523, 1053, 1115
PsuI RGATCY 2 cut(s) 291, 457
PvuI CGATCG 1 cut(s) 1086
RsaI GTAC 2 cut(s) 313, 417
RsaNI GTAC 2 cut(s) 312, 416
RseI CAYNNNNRTG 1 cut(s) 608
SaqAI TTAA 2 cut(s) 42, 1153
SatI GCNGC 6 cut(s) 601, 641, 915, 1116, 1119, 1134
Sau3AI GATC 3 cut(s) 291, 457, 1083
Sau96I GGNCC 1 cut(s) 1128
ScrFI CCNGG 3 cut(s) 153, 702, 1076
SduI GDGCHC 1 cut(s) 630
SfaNI GCATC 4 cut(s) 212, 580, 732, 874
SfcI CTRYAG 1 cut(s) 660
SinI GGWCC 1 cut(s) 1128
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 2 cut(s) 644, 896
SmoI CTYRAG 2 cut(s) 644, 896
SphI GCATGC 1 cut(s) 607
Sse9I AATT 6 cut(s) 110, 279, 472, 497, 973, 1148
SseBI AGGCCT 1 cut(s) 1038
SsiI CCGC 3 cut(s) 1102, 1131, 1134
SspMI CTAG 2 cut(s) 533, 708
StuI AGGCCT 1 cut(s) 1038
StyD4I CCNGG 3 cut(s) 151, 700, 1074
StyI CCWWGG 1 cut(s) 1124
TaaI ACNGT 2 cut(s) 78, 1008
TaqI TCGA 2 cut(s) 501, 1086
TasI AATT 6 cut(s) 110, 279, 472, 497, 973, 1148
TatI WGTACW 1 cut(s) 311
TauI GCSGC 1 cut(s) 1136
TfiI GAWTC 5 cut(s) 240, 675, 697, 837, 1050
Tru1I TTAA 2 cut(s) 42, 1153
Tru9I TTAA 2 cut(s) 42, 1153
TscAI CASTG 2 cut(s) 664, 877
TseFI GTSAC 4 cut(s) 127, 143, 862, 1025
TseI GCWGC 5 cut(s) 600, 640, 914, 1115, 1118
Tsp45I GTSAC 4 cut(s) 127, 143, 862, 1025
TspDTI ATGAA 4 cut(s) 478, 485, 753, 803
TspGWI ACGGA 1 cut(s) 767
TspRI CASTG 2 cut(s) 664, 877
VpaK11BI GGWCC 1 cut(s) 1128
XagI CCTNNNNNAGG 1 cut(s) 634
XapI RAATTY 4 cut(s) 279, 472, 497, 973
XceI RCATGY 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 266
XspI CTAG 2 cut(s) 533, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.