Rmu_sc0003596.1_g000001

Nematode resistance protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003596.1
OG0031271
Physical Location & Seq
Forward (+)
2931 .. 5618
2688 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 579 bp
atgagaagctccggcgaaaaatctaagaagaggctgatgaaggtggttcacatatcaaacccgttgaatgttacaacgagcgcctctgaatttaggactttgcgctgggttgcttcctttgtgggggtaactctgaagcccagtaccttattcgccgcacttagtggcgtcagggtcctcgagcccaagcgcgtgaactgcggcatcgagtatagcgacttcgaaaaggtcgcagctgactgttacatctggaagcttctcatggaaatcgaagacctccacctattaatggacccaaaggactttctccggctcaagaaccagttgaagatcaaaacggtggacgatacagagtcgttttgctttagatcgaagggactggtggagatcaccaagctgtgtaaggacttgaagcataagacgcaggaatccggtcaccagtccggtagcccgattccgatgaccgatagccggatttcggtcattggtcgcctgattccggtcattggtcaccggagtccggtcaccggtcgccggtcgccggagtccgccaccggagtcaagcaaggtctccaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hs1pro-1_C Hs1pro-1_N

Protein Analysis

192

Amino Acids

21.5

Weight (kDa)

9.69

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hs1pro-1_C PF07014 63 - 141 1.9e-30 Hs1pro-1 protein C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031271)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003596.1_g000001 Rmu_sc0008921.1_g000015

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 192
AciI CCGC 3 cut(s) 156, 201, 549
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 164
AfaI GTAC 1 cut(s) 145
AgeI ACCGGT 1 cut(s) 527
AgsI TTSAA 3 cut(s) 67, 328, 412
AluBI AGCT 4 cut(s) 9, 236, 256, 397
AluI AGCT 4 cut(s) 9, 236, 256, 397
Alw26I GTCTC 1 cut(s) 575
Ama87I CYCGRG 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 89
AseI ATTAAT 1 cut(s) 287
AsiGI ACCGGT 1 cut(s) 527
AspLEI GCGC 3 cut(s) 83, 105, 192
AspS9I GGNCC 2 cut(s) 175, 292
AsuHPI GGTGA 4 cut(s) 382, 428, 503, 517
AsuII TTCGAA 1 cut(s) 222
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 2 cut(s) 175, 292
BanII GRGCYC 1 cut(s) 186
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 575
BfoI RGCGCY 1 cut(s) 84
BisI GCNGC 3 cut(s) 156, 202, 234
BlsI GCNGC 3 cut(s) 157, 203, 235
Bme18I GGWCC 2 cut(s) 175, 292
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 175, 292
BmiI GGNNCC 2 cut(s) 176, 294
BmrI ACTGGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 213
BmuI ACTGGG 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 575
BsaWI WCCGGW 7 cut(s) 431, 443, 499, 513, 520, 527, 554
Bse118I RCCGGY 2 cut(s) 527, 534
Bse1I ACTGG 4 cut(s) 141, 322, 384, 439
BseNI ACTGG 4 cut(s) 141, 322, 384, 439
BseXI GCAGC 1 cut(s) 245
BseYI CCCAGC 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 192
Bsh1285I CGRYCG 2 cut(s) 532, 539
BshTI ACCGGT 1 cut(s) 527
BsiEI CGRYCG 2 cut(s) 532, 539
BsiHKCI CYCGRG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 390
BsmAI GTCTC 1 cut(s) 575
BsmFI GGGAC 1 cut(s) 390
Bso31I GGTCTC 1 cut(s) 575
BsoBI CYCGRG 1 cut(s) 179
Bsp119I TTCGAA 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 3 cut(s) 330, 368, 387
BspACI CCGC 3 cut(s) 156, 201, 549
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 176, 294
BspT104I TTCGAA 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 575
BsrFI RCCGGY 2 cut(s) 527, 534
BsrI ACTGG 4 cut(s) 141, 322, 384, 439
BssAI RCCGGY 2 cut(s) 527, 534
BssMI GATC 3 cut(s) 330, 368, 387
BssNI GRCGYC 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 242, 340
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 168
BstBI TTCGAA 1 cut(s) 222
BstDEI CTNAG 2 cut(s) 24, 161
BstEII GGTNACC 3 cut(s) 434, 509, 523
BstFNI CGCG 1 cut(s) 192
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 3 cut(s) 83, 105, 192
BstKTI GATC 3 cut(s) 333, 371, 390
BstMAI GTCTC 1 cut(s) 575
BstMBI GATC 3 cut(s) 330, 368, 387
BstMCI CGRYCG 2 cut(s) 532, 539
BstMWI GCNNNNNNNGC 2 cut(s) 198, 421
BstPI GGTNACC 3 cut(s) 434, 509, 523
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 279
CfoI GCGC 3 cut(s) 83, 105, 192
Cfr10I RCCGGY 2 cut(s) 527, 534
Cfr13I GGNCC 2 cut(s) 175, 292
CseI GACGC 2 cut(s) 157, 430
Csp6I GTAC 1 cut(s) 144
CspAI ACCGGT 1 cut(s) 527
CviAII CATG 1 cut(s) 262
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 2 cut(s) 24, 161
DpnI GATC 3 cut(s) 332, 370, 389
DpnII GATC 3 cut(s) 330, 368, 387
DraIII CACNNNGTG 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
EciI GGCGGA 1 cut(s) 538
Eco24I GRGCYC 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 575
Eco47I GGWCC 2 cut(s) 175, 292
Eco57I CTGAAG 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 179
Eco91I GGTNACC 3 cut(s) 434, 509, 523
EcoO109I RGGNCCY 1 cut(s) 175
EcoO65I GGTNACC 3 cut(s) 434, 509, 523
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 1 cut(s) 265
FaiI YATR 4 cut(s) 53, 213, 263, 417
FaqI GGGAC 1 cut(s) 390
FatI CATG 1 cut(s) 261
Fnu4HI GCNGC 3 cut(s) 156, 202, 234
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 3 cut(s) 156, 202, 234
GlaI GCGC 3 cut(s) 82, 104, 191
GluI GCNGC 3 cut(s) 156, 202, 234
GsaI CCCAGC 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 84
HgaI GACGC 2 cut(s) 157, 430
HhaI GCGC 3 cut(s) 83, 105, 192
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 1 cut(s) 265
Hin6I GCGC 3 cut(s) 81, 103, 190
HinP1I GCGC 3 cut(s) 81, 103, 190
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 7 cut(s) 353, 428, 454, 496, 517, 545, 558
HphI GGTGA 4 cut(s) 382, 428, 503, 517
Hpy166II GTNNAC 3 cut(s) 49, 196, 343
Hpy188I TCNGA 3 cut(s) 88, 135, 459
Hpy188III TCNNGA 2 cut(s) 250, 316
Hpy8I GTNNAC 3 cut(s) 49, 196, 343
HpyAV CCTTC 2 cut(s) 34, 367
HpyCH4III ACNGT 2 cut(s) 242, 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 198, 421
HpyF3I CTNAG 2 cut(s) 24, 161
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 1 cut(s) 265
HspAI GCGC 3 cut(s) 81, 103, 190
Kzo9I GATC 3 cut(s) 330, 368, 387
LmnI GCTCC 1 cut(s) 14
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 213
MaeIII GTNAC 6 cut(s) 70, 127, 242, 434, 509, 523
MalI GATC 3 cut(s) 332, 370, 389
MboI GATC 3 cut(s) 330, 368, 387
MboII GAAGA 3 cut(s) 40, 284, 340
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 1 cut(s) 89
MlyI GAGTC 4 cut(s) 362, 526, 554, 567
MnlI CCTC 4 cut(s) 24, 94, 188, 287
MseI TTAA 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 236
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 198, 421
NdeII GATC 3 cut(s) 330, 368, 387
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 2 cut(s) 176, 294
NmuCI GTSAC 3 cut(s) 434, 509, 523
NspV TTCGAA 1 cut(s) 222
PaeR7I CTCGAG 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PfeI GAWTC 3 cut(s) 428, 454, 496
PinAI ACCGGT 1 cut(s) 527
PkrI GCNGC 3 cut(s) 157, 203, 235
PleI GAGTC 4 cut(s) 361, 525, 553, 566
PpsI GAGTC 4 cut(s) 361, 525, 553, 566
PpuMI RGGWCCY 1 cut(s) 175
PshBI ATTAAT 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 175
PspEI GGTNACC 3 cut(s) 434, 509, 523
PspFI CCCAGC 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 176, 294
PspPI GGNCC 2 cut(s) 175, 292
PspPPI RGGWCCY 1 cut(s) 175
PspXI VCTCGAGB 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 3 cut(s) 156, 202, 234
Sau3AI GATC 3 cut(s) 330, 368, 387
Sau96I GGNCC 2 cut(s) 175, 292
SchI GAGTC 4 cut(s) 362, 526, 554, 567
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 179
SfuI TTCGAA 1 cut(s) 222
SinI GGWCC 2 cut(s) 175, 292
SlaI CTCGAG 1 cut(s) 179
SmlI CTYRAG 2 cut(s) 179, 314
SmoI CTYRAG 2 cut(s) 179, 314
Sse9I AATT 1 cut(s) 89
SsiI CCGC 3 cut(s) 156, 201, 549
TaaI ACNGT 2 cut(s) 242, 340
TaqI TCGA 5 cut(s) 180, 207, 222, 270, 371
TaqII GACCGA 2 cut(s) 469, 479
TasI AATT 1 cut(s) 89
TauI GCSGC 2 cut(s) 158, 204
TfiI GAWTC 3 cut(s) 428, 454, 496
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TseFI GTSAC 3 cut(s) 434, 509, 523
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 3 cut(s) 434, 509, 523
TspDTI ATGAA 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 175, 292
VspI ATTAAT 1 cut(s) 287
XapI RAATTY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.