Rmu_sc0003626.1_g000006

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003626.1
OG0031273
Physical Location & Seq
Forward (+)
33281 .. 33886
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003626.1_g000006.1.cds

Sequence Viewer

Length: 606 bp
atggaaccaacgtctctctcactctccacctctctatacctatccaacaatggctctaccctcttcccaactgctgatcagcaagaccatcgccagtatgtagcttctcctcaggctccagctatgtccgccacggcattgctccaaaaagcagcccaaatgggtgcagctgcgactagtgggtcttttcttcgtggctttggcttggccacgtcctcatcgccgccccaggcgcaagatagcaccacctctttgcagtggaacaacaacagccacagccatcagcacaagagagatggtagcggtggtgctgctgccacagtagcagctgggcttggagcaagttctgccctattgactgatctcatgatgggcacacctgtgccgtttgggggtcatcatcagcccatgacccgcgaccttcttgggctgggcataggtgctaatggcgggggtggcagtgcttcatccgccggcctatctgctttgctcaattcgtttggcggtggtggaggttatactacatatgcaaggggagaagagtcgtcatgggaaggtgcacaggagaggaaacctaatactgctactggcccagccttgctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz zf-met

Protein Analysis

201

Amino Acids

20.18

Weight (kDa)

6.27

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031273)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003626.1_g000006 Rmu_sc0014374.1_g000016

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 181
AccII CGCG 1 cut(s) 417
AciI CCGC 7 cut(s) 129, 224, 303, 415, 450, 471, 504
AcoI YGGCCR 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 392
AhlI ACTAGT 1 cut(s) 176
AjiI CACGTC 1 cut(s) 213
AjnI CCWGG 1 cut(s) 228
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 4 cut(s) 104, 122, 170, 329
AluI AGCT 4 cut(s) 104, 122, 170, 329
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 1 cut(s) 18
Alw44I GTGCAC 1 cut(s) 558
AoxI GGCC 3 cut(s) 207, 475, 589
ApaLI GTGCAC 1 cut(s) 558
ApeKI GCWGC 6 cut(s) 152, 167, 170, 311, 314, 326
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 590
AxyI CCTNAGG 1 cut(s) 111
BaeGI GKGCMC 2 cut(s) 377, 562
BalI TGGCCA 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 562
BbvI GCAGC 6 cut(s) 157, 164, 179, 298, 301, 338
BccI CCATC 4 cut(s) 96, 288, 290, 364
BceAI ACGGC 2 cut(s) 150, 370
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 1 cut(s) 230
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 18
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 2 cut(s) 177, 604
BisI GCNGC 7 cut(s) 153, 168, 171, 224, 312, 315, 327
BlsI GCNGC 7 cut(s) 154, 169, 172, 225, 313, 316, 328
Bme1390I CCNGG 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 2 cut(s) 6, 117
BmrFI CCNGG 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 132, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse118I RCCGGY 1 cut(s) 473
Bse1I ACTGG 2 cut(s) 94, 592
Bse21I CCTNAGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 132, 228
BseGI GGATG 1 cut(s) 467
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMI GCAATG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 2 cut(s) 94, 592
BseRI GAGGAG 1 cut(s) 99
BseSI GKGCMC 2 cut(s) 377, 562
BseXI GCAGC 6 cut(s) 157, 164, 179, 298, 301, 338
BseYI CCCAGC 3 cut(s) 329, 430, 592
BsgI GTGCAG 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 417
BshFI GGCC 3 cut(s) 209, 477, 591
BsiHKAI GWGCWC 1 cut(s) 562
BsiSI CCGG 1 cut(s) 474
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 1 cut(s) 18
BsmBI CGTCTC 1 cut(s) 18
BsnI GGCC 3 cut(s) 209, 477, 591
Bsp1286I GDGCHC 2 cut(s) 377, 562
Bsp143I GATC 2 cut(s) 76, 361
BspACI CCGC 7 cut(s) 129, 224, 303, 415, 450, 471, 504
BspANI GGCC 3 cut(s) 209, 477, 591
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 1 cut(s) 417
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 2 cut(s) 6, 117
BsrDI GCAATG 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 473
BsrI ACTGG 2 cut(s) 94, 592
BssAI RCCGGY 1 cut(s) 473
BssECI CCNNGG 2 cut(s) 132, 228
BssMI GATC 2 cut(s) 76, 361
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 2 cut(s) 68, 534
BstAPI GCANNNNNTGC 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 475
BstDEI CTNAG 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 467
BstFNI CGCG 1 cut(s) 417
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 2 cut(s) 79, 364
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 76, 361
BstMWI GCNNNNNNNGC 6 cut(s) 128, 232, 323, 347, 456, 470
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstSLI GKGCMC 2 cut(s) 377, 562
BstUI CGCG 1 cut(s) 417
BstV1I GCAGC 6 cut(s) 157, 164, 179, 298, 301, 338
Bsu36I CCTNAGG 1 cut(s) 111
BsuRI GGCC 3 cut(s) 209, 477, 591
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 2 cut(s) 74, 204
BtrI CACGTC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 467
BtsI GCAGTG 2 cut(s) 263, 466
BtsIMutI CAGTG 2 cut(s) 263, 466
Cac8I GCNNGC 1 cut(s) 475
CciI TCATGA 1 cut(s) 366
CfoI GCGC 1 cut(s) 235
Cfr10I RCCGGY 1 cut(s) 473
Cfr13I GGNCC 1 cut(s) 590
CviAII CATG 3 cut(s) 367, 409, 549
DdeI CTNAG 1 cut(s) 111
DpnI GATC 2 cut(s) 78, 363
DpnII GATC 2 cut(s) 76, 361
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 2 cut(s) 68, 534
EarI CTCTTC 2 cut(s) 68, 534
EciI GGCGGA 2 cut(s) 118, 460
Eco81I CCTNAGG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 3 cut(s) 370, 412, 552
FatI CATG 3 cut(s) 366, 408, 548
FauI CCCGC 2 cut(s) 422, 443
FauNDI CATATG 1 cut(s) 526
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 7 cut(s) 153, 168, 171, 224, 312, 315, 327
FokI GGATG 1 cut(s) 454
Fsp4HI GCNGC 7 cut(s) 153, 168, 171, 224, 312, 315, 327
FspBI CTAG 2 cut(s) 177, 604
GlaI GCGC 1 cut(s) 234
GluI GCNGC 7 cut(s) 153, 168, 171, 224, 312, 315, 327
GsaI CCCAGC 3 cut(s) 333, 434, 596
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 3 cut(s) 209, 477, 591
HapII CCGG 1 cut(s) 474
HhaI GCGC 1 cut(s) 235
Hin1II CATG 3 cut(s) 370, 412, 552
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HinfI GANTC 1 cut(s) 542
HpaII CCGG 1 cut(s) 474
Hpy166II GTNNAC 1 cut(s) 560
Hpy188III TCNNGA 1 cut(s) 367
Hpy8I GTNNAC 1 cut(s) 560
HpyAV CCTTC 2 cut(s) 431, 548
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 2 cut(s) 11, 212
HpyCH4V TGCA 4 cut(s) 167, 256, 530, 560
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 232, 323, 347, 456, 470
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 2 cut(s) 11, 212
Hsp92II CATG 3 cut(s) 370, 412, 552
HspAI GCGC 1 cut(s) 233
KroI GCCGGC 1 cut(s) 473
KroNI GCCGGC 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 2 cut(s) 76, 361
LmnI GCTCC 3 cut(s) 121, 147, 338
Lsp1109I GCAGC 6 cut(s) 157, 164, 179, 298, 301, 338
MaeI CTAG 2 cut(s) 177, 604
MaeII ACGT 2 cut(s) 11, 212
MalI GATC 2 cut(s) 78, 363
MboI GATC 2 cut(s) 76, 361
MboII GAAGA 3 cut(s) 55, 182, 551
MhlI GDGCHC 2 cut(s) 377, 562
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 1 cut(s) 493
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 7 cut(s) 40, 71, 120, 226, 259, 506, 561
Mox20I TGGCCA 1 cut(s) 209
MroNI GCCGGC 1 cut(s) 473
MscI TGGCCA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 380
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 2 cut(s) 170, 329
MspI CCGG 1 cut(s) 474
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 417
MwoI GCNNNNNNNGC 6 cut(s) 128, 232, 323, 347, 456, 470
NaeI GCCGGC 1 cut(s) 475
NdeI CATATG 1 cut(s) 526
NdeII GATC 2 cut(s) 76, 361
NgoMIV GCCGGC 1 cut(s) 473
NlaIII CATG 3 cut(s) 370, 412, 552
NlaIV GGNNCC 2 cut(s) 6, 117
OliI CACNNNNGTG 1 cut(s) 380
PagI TCATGA 1 cut(s) 366
PdiI GCCGGC 1 cut(s) 475
PkrI GCNGC 7 cut(s) 154, 169, 172, 225, 313, 316, 328
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
Psp6I CCWGG 1 cut(s) 228
PspFI CCCAGC 3 cut(s) 329, 430, 592
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 2 cut(s) 6, 117
PspPI GGNCC 1 cut(s) 590
PvuII CAGCTG 2 cut(s) 170, 329
RseI CAYNNNNRTG 1 cut(s) 380
SatI GCNGC 7 cut(s) 153, 168, 171, 224, 312, 315, 327
Sau3AI GATC 2 cut(s) 76, 361
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 2 cut(s) 377, 562
SmiMI CAYNNNNRTG 1 cut(s) 380
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 1 cut(s) 493
SsiI CCGC 7 cut(s) 129, 224, 303, 415, 450, 471, 504
SspMI CTAG 2 cut(s) 177, 604
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 2 cut(s) 14, 215
TasI AATT 1 cut(s) 493
TauI GCSGC 1 cut(s) 226
TscAI CASTG 2 cut(s) 263, 466
TseI GCWGC 6 cut(s) 152, 167, 170, 311, 314, 326
TspDTI ATGAA 1 cut(s) 456
TspRI CASTG 2 cut(s) 263, 466
VneI GTGCAC 1 cut(s) 558
XspI CTAG 2 cut(s) 177, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.