Rmu_sc0014374.1_g000016

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014374.1
OG0031273
Physical Location & Seq
Reverse (-)
43256 .. 43867
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014374.1_g000016.1.cds

Sequence Viewer

Length: 612 bp
atggaaccaacgtctctctcactctccacctctctatacctatccaacaatggctccaccctcttcccaactgctgatcagcaagaccatcgccagtatgtagcttctcctcaggctccagccatgtccgccacggcattgctccaaaaagcagcccaaatgggtgcagctgcgactagtgggtcttttcttcgtggctttggcttggccacgtcctcatcgccgccccaggcgcaagatagcaccacctctttgcagtggaacaacaacagccacagccacagccatcagcacaagagagatggtagcggcggtgctgctgccacagtagcagctgggcttggagcaagttctgccctattgactgatctcatgatgggcccacctgtgccgtttgggggtcatcatcagcccatgacccgcgaccttcttgggctgggcataggtgctaatggcgggggtggcagtgcttcatccgccggactgtctgctttgctcaattcgttcggcggtggtggaggttatactacatatgcaaggggagaagagtcgtcatgggaaggtgcacaggagaggaaacctaatactgctactggcccagccttgctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz zf-met

Protein Analysis

203

Amino Acids

20.4

Weight (kDa)

6.35

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031273)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003626.1_g000006 Rmu_sc0014374.1_g000016

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 181
AccII CGCG 1 cut(s) 423
AciI CCGC 8 cut(s) 129, 224, 309, 312, 421, 456, 477, 510
AcoI YGGCCR 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 398
AhlI ACTAGT 1 cut(s) 176
AjiI CACGTC 1 cut(s) 213
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 3 cut(s) 104, 170, 335
AluI AGCT 3 cut(s) 104, 170, 335
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 1 cut(s) 18
Alw44I GTGCAC 1 cut(s) 564
AoxI GGCC 3 cut(s) 207, 379, 595
ApaI GGGCCC 1 cut(s) 383
ApaLI GTGCAC 1 cut(s) 564
ApeKI GCWGC 6 cut(s) 152, 167, 170, 317, 320, 332
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 3 cut(s) 379, 380, 596
AxyI CCTNAGG 1 cut(s) 111
BaeGI GKGCMC 2 cut(s) 383, 568
BalI TGGCCA 1 cut(s) 209
BanII GRGCYC 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 6 cut(s) 157, 164, 179, 304, 307, 344
BccI CCATC 4 cut(s) 96, 294, 296, 370
BceAI ACGGC 2 cut(s) 150, 376
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 1 cut(s) 230
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 18
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 1 cut(s) 177
BisI GCNGC 8 cut(s) 153, 168, 171, 224, 310, 318, 321, 333
BlsI GCNGC 8 cut(s) 154, 169, 172, 225, 311, 319, 322, 334
Bme1390I CCNGG 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 213
BmgT120I GGNCC 3 cut(s) 379, 380, 596
BmiI GGNNCC 4 cut(s) 6, 55, 117, 381
BmrFI CCNGG 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 132, 228
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse1I ACTGG 2 cut(s) 94, 598
Bse21I CCTNAGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 132, 228
BseGI GGATG 1 cut(s) 473
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMI GCAATG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 2 cut(s) 94, 598
BseRI GAGGAG 1 cut(s) 99
BseSI GKGCMC 2 cut(s) 383, 568
BseXI GCAGC 6 cut(s) 157, 164, 179, 304, 307, 344
BseYI CCCAGC 3 cut(s) 335, 436, 598
BsgI GTGCAG 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 423
BshFI GGCC 3 cut(s) 209, 381, 597
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 1 cut(s) 480
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 18
BsmBI CGTCTC 1 cut(s) 18
BsnI GGCC 3 cut(s) 209, 381, 597
Bsp120I GGGCCC 1 cut(s) 379
Bsp1286I GDGCHC 2 cut(s) 383, 568
Bsp143I GATC 2 cut(s) 76, 367
BspACI CCGC 8 cut(s) 129, 224, 309, 312, 421, 456, 477, 510
BspANI GGCC 3 cut(s) 209, 381, 597
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 1 cut(s) 423
BspHI TCATGA 1 cut(s) 372
BspLI GGNNCC 4 cut(s) 6, 55, 117, 381
BsrDI GCAATG 1 cut(s) 137
BsrI ACTGG 2 cut(s) 94, 598
BssECI CCNNGG 2 cut(s) 132, 228
BssMI GATC 2 cut(s) 76, 367
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 2 cut(s) 328, 486
Bst6I CTCTTC 2 cut(s) 68, 540
BstAPI GCANNNNNTGC 1 cut(s) 353
BstDEI CTNAG 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 473
BstFNI CGCG 1 cut(s) 423
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 2 cut(s) 79, 370
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 76, 367
BstMWI GCNNNNNNNGC 6 cut(s) 128, 232, 329, 353, 462, 476
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstSLI GKGCMC 2 cut(s) 383, 568
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 6 cut(s) 157, 164, 179, 304, 307, 344
Bsu36I CCTNAGG 1 cut(s) 111
BsuRI GGCC 3 cut(s) 209, 381, 597
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 2 cut(s) 74, 204
BtrI CACGTC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 473
BtsI GCAGTG 2 cut(s) 263, 472
BtsIMutI CAGTG 2 cut(s) 263, 472
CciI TCATGA 1 cut(s) 372
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 3 cut(s) 379, 380, 596
CviAII CATG 4 cut(s) 124, 373, 415, 555
DdeI CTNAG 1 cut(s) 111
DpnI GATC 2 cut(s) 78, 369
DpnII GATC 2 cut(s) 76, 367
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 2 cut(s) 68, 540
EarI CTCTTC 2 cut(s) 68, 540
EciI GGCGGA 2 cut(s) 118, 466
Eco24I GRGCYC 1 cut(s) 383
Eco81I CCTNAGG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 383
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 4 cut(s) 127, 376, 418, 558
FatI CATG 4 cut(s) 123, 372, 414, 554
FauI CCCGC 2 cut(s) 428, 449
FauNDI CATATG 1 cut(s) 532
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 8 cut(s) 153, 168, 171, 224, 310, 318, 321, 333
FokI GGATG 1 cut(s) 460
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 8 cut(s) 153, 168, 171, 224, 310, 318, 321, 333
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 234
GluI GCNGC 8 cut(s) 153, 168, 171, 224, 310, 318, 321, 333
GsaI CCCAGC 3 cut(s) 339, 440, 602
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 3 cut(s) 209, 381, 597
HapII CCGG 1 cut(s) 480
HhaI GCGC 1 cut(s) 235
Hin1II CATG 4 cut(s) 127, 376, 418, 558
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HinfI GANTC 1 cut(s) 548
HpaII CCGG 1 cut(s) 480
Hpy166II GTNNAC 1 cut(s) 566
Hpy188III TCNNGA 1 cut(s) 373
Hpy8I GTNNAC 1 cut(s) 566
HpyAV CCTTC 2 cut(s) 437, 554
HpyCH4III ACNGT 2 cut(s) 328, 486
HpyCH4IV ACGT 2 cut(s) 11, 212
HpyCH4V TGCA 4 cut(s) 167, 256, 536, 566
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 232, 329, 353, 462, 476
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 2 cut(s) 11, 212
Hsp92II CATG 4 cut(s) 127, 376, 418, 558
HspAI GCGC 1 cut(s) 233
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 2 cut(s) 76, 367
LmnI GCTCC 4 cut(s) 59, 121, 147, 344
Lsp1109I GCAGC 6 cut(s) 157, 164, 179, 304, 307, 344
MaeI CTAG 1 cut(s) 177
MaeII ACGT 2 cut(s) 11, 212
MalI GATC 2 cut(s) 78, 369
MboI GATC 2 cut(s) 76, 367
MboII GAAGA 3 cut(s) 55, 182, 557
MhlI GDGCHC 2 cut(s) 383, 568
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 1 cut(s) 499
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 7 cut(s) 40, 71, 120, 226, 259, 512, 567
Mox20I TGGCCA 1 cut(s) 209
MscI TGGCCA 1 cut(s) 209
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 2 cut(s) 170, 335
MspI CCGG 1 cut(s) 480
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 6 cut(s) 128, 232, 329, 353, 462, 476
NdeI CATATG 1 cut(s) 532
NdeII GATC 2 cut(s) 76, 367
NlaIII CATG 4 cut(s) 127, 376, 418, 558
NlaIV GGNNCC 4 cut(s) 6, 55, 117, 381
PagI TCATGA 1 cut(s) 372
PkrI GCNGC 8 cut(s) 154, 169, 172, 225, 311, 319, 322, 334
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
Psp6I CCWGG 1 cut(s) 228
PspFI CCCAGC 3 cut(s) 335, 436, 598
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 4 cut(s) 6, 55, 117, 381
PspOMI GGGCCC 1 cut(s) 379
PspPI GGNCC 3 cut(s) 379, 380, 596
PvuII CAGCTG 2 cut(s) 170, 335
SatI GCNGC 8 cut(s) 153, 168, 171, 224, 310, 318, 321, 333
Sau3AI GATC 2 cut(s) 76, 367
Sau96I GGNCC 3 cut(s) 379, 380, 596
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 2 cut(s) 383, 568
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 1 cut(s) 499
SsiI CCGC 8 cut(s) 129, 224, 309, 312, 421, 456, 477, 510
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 328, 486
TaiI ACGT 2 cut(s) 14, 215
TasI AATT 1 cut(s) 499
TauI GCSGC 2 cut(s) 226, 312
TscAI CASTG 2 cut(s) 263, 472
TseI GCWGC 6 cut(s) 152, 167, 170, 317, 320, 332
TspDTI ATGAA 1 cut(s) 462
TspRI CASTG 2 cut(s) 263, 472
VneI GTGCAC 1 cut(s) 564
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.