Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003630.1

Orthogroup ID

OG0031274

Physical Location & Seq

Genomic Coordinates Reverse (-)

98734 .. 100461

Gene Structure 1728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003630.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgttgaagctccccacctttcaatctcggatgttcattgttcttcagtcatctttctcagcattcactaatctattcagggtggcaaagaagatgggacttgtagaaagagactcggcttggatattcacagagagtattactagtttgctgaatcctctagccaaccatgacatggaaggcactctgggaatcaagacatatgtaatactagttcttatgccaataccgaacaactatatgcgtttaagcggcaaaatgcacttcaaaggaggtgaagtgttgtactctccaatattcaagatcataaacattgtggaagggaacagacacaaagagttgaacttttggagaccagaggttgggttctcagaaagccttgcaaaagaaacgaacagaaaaagaagtgatgatattggtacagtaatttggcccggcatcctaggtgaacgagcccccaaaggctgggcaatgcctactgctagaaatccaatgagaattttggttccaggtagaacttccttcaacgcatttgtaaaggttgatttaaggaagacgactctgcagtatgacggtttctgcattcaagttttccacaaggtgctaagtcgcctggattatcctttgctctatgaatttcatgccgttgatggtccctatgatgatttggtagaactggtctataacaaggccccccaaggagtcccccactctcaggctaagatagacctccggatggtcggtgaattgtttgttgagggggagctgcacggagcagagggtgttgggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

263

Amino Acids

29.82

Weight (kDa)

9.06

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031274)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003630.1_g000027
rosa_samantha	Rh5DG129200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	175, 362, 465
AccIII	TCCGGA	1 cut(s)	732
AciI	CCGC	1 cut(s)	252
AcsI	RAATTY	2 cut(s)	498, 635
AcuI	CTGAAG	1 cut(s)	29
AdeI	CACNNNGTG	1 cut(s)	601
AfaI	GTAC	2 cut(s)	287, 421
AfiI	CCNNNNNNNGG	5 cut(s)	175, 362, 465, 715, 736
AgsI	TTSAA	7 cut(s)	7, 23, 268, 301, 343, 526, 587
AhlI	ACTAGT	2 cut(s)	143, 211
AjnI	CCWGG	2 cut(s)	508, 612
AluBI	AGCT	2 cut(s)	10, 766
AluI	AGCT	2 cut(s)	10, 766
Alw26I	GTCTC	2 cut(s)	105, 346
Aor13HI	TCCGGA	1 cut(s)	732
AoxI	GGCC	2 cut(s)	431, 690
ApeKI	GCWGC	1 cut(s)	766
ApoI	RAATTY	2 cut(s)	498, 635
AspA2I	CCTAGG	1 cut(s)	442
AspS9I	GGNCC	3 cut(s)	432, 653, 691
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	3 cut(s)	287, 458, 755
AvaII	GGWCC	1 cut(s)	653
AvrII	CCTAGG	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	560
BbvI	GCAGC	1 cut(s)	753
BccI	CCATC	3 cut(s)	88, 644, 730
BceAI	ACGGC	1 cut(s)	629
BciT130I	CCWGG	2 cut(s)	510, 614
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	105, 346
BcuI	ACTAGT	2 cut(s)	143, 211
BfaI	CTAG	5 cut(s)	144, 161, 212, 443, 483
BfmI	CTRYAG	1 cut(s)	563
BisI	GCNGC	2 cut(s)	253, 767
BlnI	CCTAGG	1 cut(s)	442
BlsI	GCNGC	2 cut(s)	254, 768
Bme1390I	CCNGG	3 cut(s)	435, 510, 614
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	3 cut(s)	432, 653, 691
BmiI	GGNNCC	3 cut(s)	507, 655, 693
BmrFI	CCNGG	3 cut(s)	435, 510, 614
BmsI	GCATC	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	560
BpuMI	CCSGG	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	442, 697
BsaWI	WCCGGW	1 cut(s)	732
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	5 cut(s)	175, 362, 465, 715, 736
Bse1I	ACTGG	1 cut(s)	681
Bse3DI	GCAATG	1 cut(s)	477
BseAI	TCCGGA	1 cut(s)	732
BseBI	CCWGG	2 cut(s)	510, 614
BseDI	CCNNGG	2 cut(s)	442, 697
BseGI	GGATG	3 cut(s)	36, 438, 741
BseLI	CCNNNNNNNGG	5 cut(s)	175, 362, 465, 715, 736
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	3 cut(s)	72, 384, 728
BseNI	ACTGG	1 cut(s)	681
BseXI	GCAGC	1 cut(s)	753
BseYI	CCCAGC	1 cut(s)	465
BsgI	GTGCAG	1 cut(s)	752
BshFI	GGCC	2 cut(s)	433, 692
BsiSI	CCGG	2 cut(s)	435, 733
BslFI	GGGAC	3 cut(s)	111, 639, 689
BslI	CCNNNNNNNGG	5 cut(s)	175, 362, 465, 715, 736
BsmAI	GTCTC	2 cut(s)	105, 346
BsmFI	GGGAC	3 cut(s)	111, 639, 689
BsmI	GAATGC	2 cut(s)	62, 582
BsnI	GGCC	2 cut(s)	433, 692
Bso31I	GGTCTC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp13I	TCCGGA	1 cut(s)	732
Bsp143I	GATC	1 cut(s)	303
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	2 cut(s)	433, 692
BspCNI	CTCAG	3 cut(s)	71, 383, 727
BspEI	TCCGGA	1 cut(s)	732
BspLI	GGNNCC	3 cut(s)	507, 655, 693
BspMAI	CTGCAG	1 cut(s)	567
BspTNI	GGTCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	681
BssECI	CCNNGG	2 cut(s)	442, 697
BssMI	GATC	1 cut(s)	303
BssT1I	CCWWGG	2 cut(s)	442, 697
Bst2UI	CCWGG	2 cut(s)	510, 614
Bst4CI	ACNGT	2 cut(s)	424, 575
BstDEI	CTNAG	5 cut(s)	58, 370, 605, 714, 720
BstF5I	GGATG	3 cut(s)	36, 438, 741
BstKTI	GATC	1 cut(s)	306
BstMAI	GTCTC	2 cut(s)	105, 346
BstMBI	GATC	1 cut(s)	303
BstNI	CCWGG	2 cut(s)	510, 614
BstSCI	CCNGG	3 cut(s)	433, 508, 612
BstSFI	CTRYAG	1 cut(s)	563
BstV1I	GCAGC	1 cut(s)	753
BstV2I	GAAGAC	1 cut(s)	560
BsuRI	GGCC	2 cut(s)	433, 692
BtsCI	GGATG	3 cut(s)	36, 438, 741
Cfr13I	GGNCC	3 cut(s)	432, 653, 691
Csp6I	GTAC	2 cut(s)	286, 420
CviAII	CATG	3 cut(s)	170, 175, 641
CviQI	GTAC	2 cut(s)	286, 420
DdeI	CTNAG	5 cut(s)	58, 370, 605, 714, 720
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
DraIII	CACNNNGTG	1 cut(s)	601
Eco130I	CCWWGG	2 cut(s)	442, 697
Eco24I	GRGCYC	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	653
Eco57I	CTGAAG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	691
EcoRII	CCWGG	2 cut(s)	508, 612
EcoT14I	CCWWGG	2 cut(s)	442, 697
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	2 cut(s)	442, 697
FaeI	CATG	3 cut(s)	173, 178, 644
FaqI	GGGAC	3 cut(s)	111, 639, 689
FatI	CATG	3 cut(s)	169, 174, 640
FauNDI	CATATG	1 cut(s)	202
Fnu4HI	GCNGC	2 cut(s)	253, 767
FokI	GGATG	3 cut(s)	43, 425, 748
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	2 cut(s)	253, 767
FspBI	CTAG	5 cut(s)	144, 161, 212, 443, 483
GluI	GCNGC	2 cut(s)	253, 767
GsaI	CCCAGC	1 cut(s)	469
HaeIII	GGCC	2 cut(s)	433, 692
HapII	CCGG	2 cut(s)	435, 733
Hin1II	CATG	3 cut(s)	173, 178, 644
HinfI	GANTC	5 cut(s)	113, 154, 192, 559, 702
HpaII	CCGG	2 cut(s)	435, 733
HphI	GGTGA	3 cut(s)	287, 458, 755
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	2 cut(s)	30, 373
Hpy188III	TCNNGA	3 cut(s)	196, 301, 733
Hpy8I	GTNNAC	1 cut(s)	449
HpyAV	CCTTC	3 cut(s)	173, 314, 532
HpyCH4III	ACNGT	2 cut(s)	424, 575
HpyCH4V	TGCA	5 cut(s)	262, 383, 565, 582, 769
HpyF3I	CTNAG	5 cut(s)	58, 370, 605, 714, 720
Hsp92II	CATG	3 cut(s)	173, 178, 644
Kpn2I	TCCGGA	1 cut(s)	732
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	3 cut(s)	15, 763, 773
Lsp1109I	GCAGC	1 cut(s)	753
LweI	GCATC	1 cut(s)	447
MaeI	CTAG	5 cut(s)	144, 161, 212, 443, 483
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	3 cut(s)	35, 103, 565
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	4 cut(s)	426, 498, 635, 746
MlyI	GAGTC	3 cut(s)	107, 553, 711
MnlI	CCTC	6 cut(s)	168, 266, 352, 740, 751, 772
MroI	TCCGGA	1 cut(s)	732
MseI	TTAA	2 cut(s)	248, 548
MspI	CCGG	2 cut(s)	435, 733
MspR9I	CCNGG	3 cut(s)	435, 510, 614
Mva1269I	GAATGC	2 cut(s)	62, 582
MvaI	CCWGG	2 cut(s)	510, 614
NciI	CCSGG	1 cut(s)	435
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	3 cut(s)	173, 178, 644
NlaIV	GGNNCC	3 cut(s)	507, 655, 693
NmeAIII	GCCGAG	1 cut(s)	95
PctI	GAATGC	2 cut(s)	62, 582
PfeI	GAWTC	2 cut(s)	154, 192
PflMI	CCANNNNNTGG	3 cut(s)	175, 362, 465
PkrI	GCNGC	2 cut(s)	254, 768
PleI	GAGTC	3 cut(s)	107, 553, 710
PpsI	GAGTC	3 cut(s)	107, 553, 710
Psp6I	CCWGG	2 cut(s)	508, 612
PspFI	CCCAGC	1 cut(s)	465
PspGI	CCWGG	2 cut(s)	508, 612
PspN4I	GGNNCC	3 cut(s)	507, 655, 693
PspPI	GGNCC	3 cut(s)	432, 653, 691
PsrI	GAACNNNNNNTAC	2 cut(s)	198, 230
PstI	CTGCAG	1 cut(s)	567
RsaI	GTAC	2 cut(s)	287, 421
RsaNI	GTAC	2 cut(s)	286, 420
SaqAI	TTAA	2 cut(s)	248, 548
SatI	GCNGC	2 cut(s)	253, 767
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	3 cut(s)	432, 653, 691
SchI	GAGTC	3 cut(s)	107, 553, 711
ScrFI	CCNGG	3 cut(s)	435, 510, 614
SduI	GDGCHC	1 cut(s)	457
SfaNI	GCATC	1 cut(s)	447
SfcI	CTRYAG	1 cut(s)	563
SinI	GGWCC	1 cut(s)	653
SpeI	ACTAGT	2 cut(s)	143, 211
Sse9I	AATT	4 cut(s)	426, 498, 635, 746
SsiI	CCGC	1 cut(s)	252
SspI	AATATT	1 cut(s)	297
SspMI	CTAG	5 cut(s)	144, 161, 212, 443, 483
StyD4I	CCNGG	3 cut(s)	433, 508, 612
StyI	CCWWGG	2 cut(s)	442, 697
TaaI	ACNGT	2 cut(s)	424, 575
TasI	AATT	4 cut(s)	426, 498, 635, 746
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	154, 192
Tru1I	TTAA	2 cut(s)	248, 548
Tru9I	TTAA	2 cut(s)	248, 548
TseI	GCWGC	1 cut(s)	766
TspDTI	ATGAA	3 cut(s)	25, 629, 648
TspGWI	ACGGA	1 cut(s)	786
Van91I	CCANNNNNTGG	3 cut(s)	175, 362, 465
VpaK11BI	GGWCC	1 cut(s)	653
XapI	RAATTY	2 cut(s)	498, 635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmaJI	CCTAGG	1 cut(s)	442
XspI	CTAG	5 cut(s)	144, 161, 212, 443, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.