Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0031274

Physical Location & Seq

Genomic Coordinates Forward (+)

12374781 .. 12399513

Gene Structure 24733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG129200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCACTTCAAAGGAGGTGAAGTGTTGTACTCTCCAATATTCAAGATCATAAACATTGTGGAAGGGAACAGACACAAAGAGTTGAACTTTTGGAGACCAGAGGTTGGGTTCTCAGAAAGCCTTGCAAAAGAAACGAACAGAAAAAGAAGTGATGATATTGGTACAGTAATTTGGCCCGGCATCCTAGGTGAACGAGCCCCCAAAGGCTGGGCAATGCCTACTGCTGGAAATCCAATGAGAATTTTGGTTCCAGGTAGAACTTCCTTCAACGCATTTGTAAAGGTTGATTTAAGGAAGACGACTCTGCAGTATGACGGTTTCTGCATTCAAGTTTTCCACAAGGTGCTAAGTCGCCTGGATTATCCTTTGCTCTATGAATTTCATGCCGTTGATGGTCCCTATGATGATTTGGTAGAACTGGTCTTTAACAAGATATTTCAGAAAGGCTCTCCAATTGCCTGGGATTTCACCAAGGCCATTCTAGAGTTATTGGAGGATGGCGAACTGAAGTCACTTGAAGATACTTGGTTGACACCGAATCATGACTGTCCAAACAATTCAACTTCCGATGAACCAGAAAGCTTGAGTGTCAAGAATTTTATGGGCCTTTATGTAATATCTGGTGCTACTTCCACCATTTGTCTTCTATTATCCTTCACCATCTTGCTGAAAAAGTTTCAACAACTCGAGAAAGCATACCTAGGCAATGCAATTGATGAAAGTGTTTGGAACAGGACAGTTAGAATAGCAAGATTCCTATATAATAGAGAGTTCAATGTTCCAAGCAGAGCTCCACGTTTTGTTGATGTGCCGGAATTGACTTCTTCCCAAGGGGAGCAATGTGATCACTTCCACCCCTCAGGAGCATCAACTTCAGGCCTCCACCCCCGCACAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

299

Amino Acids

33.93

Weight (kDa)

6.26

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031274)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003630.1_g000027
rosa_samantha	Rh5DG129200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	104, 207
AciI	CCGC	1 cut(s)	889
AcsI	RAATTY	3 cut(s)	240, 377, 595
AcuI	CTGAAG	2 cut(s)	527, 858
AdeI	CACNNNGTG	1 cut(s)	343
AfaI	GTAC	2 cut(s)	29, 163
AfiI	CCNNNNNNNGG	3 cut(s)	104, 207, 224
AgsI	TTSAA	9 cut(s)	10, 43, 85, 268, 329, 518, 561, 680, 775
AjnI	CCWGG	3 cut(s)	250, 354, 458
AluBI	AGCT	2 cut(s)	582, 791
AluI	AGCT	2 cut(s)	582, 791
Alw21I	GWGCWC	1 cut(s)	793
Alw26I	GTCTC	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	4 cut(s)	173, 474, 604, 877
ApoI	RAATTY	3 cut(s)	240, 377, 595
AspA2I	CCTAGG	2 cut(s)	184, 700
AspS9I	GGNCC	3 cut(s)	174, 395, 604
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	4 cut(s)	29, 200, 460, 649
AvaI	CYCGRG	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	395
AvrII	CCTAGG	2 cut(s)	184, 700
AxyI	CCTNAGG	1 cut(s)	859
BanII	GRGCYC	2 cut(s)	199, 793
BbsI	GAAGAC	2 cut(s)	302, 635
Bbv12I	GWGCWC	1 cut(s)	793
BccI	CCATC	3 cut(s)	386, 491, 668
BceAI	ACGGC	1 cut(s)	371
BciT130I	CCWGG	3 cut(s)	252, 356, 460
BclI	TGATCA	1 cut(s)	844
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	3 cut(s)	185, 482, 701
BfmI	CTRYAG	1 cut(s)	305
BlnI	CCTAGG	2 cut(s)	184, 700
Bme1390I	CCNGG	4 cut(s)	177, 252, 356, 460
Bme18I	GGWCC	1 cut(s)	395
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	3 cut(s)	174, 395, 604
BmiI	GGNNCC	2 cut(s)	249, 397
BmrFI	CCNGG	4 cut(s)	177, 252, 356, 460
BmsI	GCATC	2 cut(s)	189, 875
BpiI	GAAGAC	2 cut(s)	302, 635
BpuEI	CTTGAG	1 cut(s)	604
BpuMI	CCSGG	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	5 cut(s)	184, 459, 471, 700, 829
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 207, 224
Bse1I	ACTGG	1 cut(s)	423
Bse21I	CCTNAGG	1 cut(s)	859
Bse3DI	GCAATG	3 cut(s)	219, 712, 845
BseBI	CCWGG	3 cut(s)	252, 356, 460
BseDI	CCNNGG	5 cut(s)	184, 459, 471, 700, 829
BseGI	GGATG	2 cut(s)	180, 502
BseLI	CCNNNNNNNGG	3 cut(s)	104, 207, 224
BseMI	GCAATG	3 cut(s)	219, 712, 845
BseMII	CTCAG	2 cut(s)	126, 873
BseNI	ACTGG	1 cut(s)	423
BseYI	CCCAGC	1 cut(s)	207
BshFI	GGCC	4 cut(s)	175, 476, 606, 879
BsiHKAI	GWGCWC	1 cut(s)	793
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	2 cut(s)	177, 812
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	3 cut(s)	104, 207, 224
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	381
BsmI	GAATGC	1 cut(s)	324
BsnI	GGCC	4 cut(s)	175, 476, 606, 879
Bso31I	GGTCTC	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	686
Bsp1286I	GDGCHC	2 cut(s)	199, 793
Bsp143I	GATC	2 cut(s)	45, 844
BspACI	CCGC	1 cut(s)	889
BspANI	GGCC	4 cut(s)	175, 476, 606, 879
BspCNI	CTCAG	2 cut(s)	125, 872
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	249, 397
BspMAI	CTGCAG	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	88
BsrDI	GCAATG	3 cut(s)	219, 712, 845
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	5 cut(s)	184, 459, 471, 700, 829
BssMI	GATC	2 cut(s)	45, 844
BssT1I	CCWWGG	4 cut(s)	184, 471, 700, 829
Bst2UI	CCWGG	3 cut(s)	252, 356, 460
Bst4CI	ACNGT	4 cut(s)	166, 317, 548, 739
BstDEI	CTNAG	3 cut(s)	112, 347, 859
BstF5I	GGATG	2 cut(s)	180, 502
BstKTI	GATC	2 cut(s)	48, 847
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	2 cut(s)	45, 844
BstNI	CCWGG	3 cut(s)	252, 356, 460
BstSCI	CCNGG	4 cut(s)	175, 250, 354, 458
BstSFI	CTRYAG	1 cut(s)	305
BstV2I	GAAGAC	2 cut(s)	302, 635
BstXI	CCANNNNNNTGG	1 cut(s)	459
Bsu36I	CCTNAGG	1 cut(s)	859
BsuRI	GGCC	4 cut(s)	175, 476, 606, 879
BtsCI	GGATG	2 cut(s)	180, 502
CciI	TCATGA	1 cut(s)	541
Cfr13I	GGNCC	3 cut(s)	174, 395, 604
Csp6I	GTAC	2 cut(s)	28, 162
CviAII	CATG	2 cut(s)	383, 542
CviQI	GTAC	2 cut(s)	28, 162
DdeI	CTNAG	3 cut(s)	112, 347, 859
DpnI	GATC	2 cut(s)	47, 846
DpnII	GATC	2 cut(s)	45, 844
DraIII	CACNNNGTG	1 cut(s)	343
Ecl136II	GAGCTC	1 cut(s)	791
Eco130I	CCWWGG	4 cut(s)	184, 471, 700, 829
Eco147I	AGGCCT	1 cut(s)	879
Eco24I	GRGCYC	2 cut(s)	199, 793
Eco31I	GGTCTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	395
Eco53kI	GAGCTC	1 cut(s)	791
Eco57I	CTGAAG	2 cut(s)	527, 858
Eco81I	CCTNAGG	1 cut(s)	859
Eco88I	CYCGRG	1 cut(s)	686
EcoICRI	GAGCTC	1 cut(s)	791
EcoRII	CCWGG	3 cut(s)	250, 354, 458
EcoT14I	CCWWGG	4 cut(s)	184, 471, 700, 829
EcoT38I	GRGCYC	2 cut(s)	199, 793
ErhI	CCWWGG	4 cut(s)	184, 471, 700, 829
FaeI	CATG	2 cut(s)	386, 545
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	2 cut(s)	382, 541
FauI	CCCGC	1 cut(s)	896
FbaI	TGATCA	1 cut(s)	844
FokI	GGATG	2 cut(s)	167, 509
FriOI	GRGCYC	2 cut(s)	199, 793
FspBI	CTAG	3 cut(s)	185, 482, 701
GsaI	CCCAGC	1 cut(s)	211
HaeIII	GGCC	4 cut(s)	175, 476, 606, 879
HapII	CCGG	2 cut(s)	177, 812
Hin1II	CATG	2 cut(s)	386, 545
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	3 cut(s)	301, 538, 753
HpaII	CCGG	2 cut(s)	177, 812
HphI	GGTGA	4 cut(s)	29, 200, 460, 649
Hpy166II	GTNNAC	2 cut(s)	191, 531
Hpy188I	TCNGA	3 cut(s)	115, 441, 568
Hpy188III	TCNNGA	6 cut(s)	43, 482, 542, 592, 688, 861
Hpy8I	GTNNAC	2 cut(s)	191, 531
HpyAV	CCTTC	3 cut(s)	56, 274, 664
HpyCH4III	ACNGT	4 cut(s)	166, 317, 548, 739
HpyCH4IV	ACGT	1 cut(s)	796
HpyCH4V	TGCA	5 cut(s)	4, 125, 307, 324, 710
HpyF3I	CTNAG	3 cut(s)	112, 347, 859
HpySE526I	ACGT	1 cut(s)	796
Hsp92II	CATG	2 cut(s)	386, 545
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	2 cut(s)	45, 844
LmnI	GCTCC	3 cut(s)	796, 835, 863
LweI	GCATC	2 cut(s)	189, 875
MaeI	CTAG	3 cut(s)	185, 482, 701
MaeII	ACGT	1 cut(s)	796
MaeIII	GTNAC	1 cut(s)	510
MalI	GATC	2 cut(s)	47, 846
MboI	GATC	2 cut(s)	45, 844
MboII	GAAGA	4 cut(s)	307, 530, 635, 816
MfeI	CAATTG	2 cut(s)	453, 711
MhlI	GDGCHC	2 cut(s)	199, 793
MluCI	AATT	8 cut(s)	168, 240, 377, 453, 556, 595, 711, 815
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	5 cut(s)	8, 94, 487, 868, 890
MseI	TTAA	2 cut(s)	290, 426
MspI	CCGG	2 cut(s)	177, 812
MspR9I	CCNGG	4 cut(s)	177, 252, 356, 460
MunI	CAATTG	2 cut(s)	453, 711
Mva1269I	GAATGC	1 cut(s)	324
MvaI	CCWGG	3 cut(s)	252, 356, 460
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	45, 844
NlaIII	CATG	2 cut(s)	386, 545
NlaIV	GGNNCC	2 cut(s)	249, 397
NmuCI	GTSAC	1 cut(s)	510
PaeR7I	CTCGAG	1 cut(s)	686
PagI	TCATGA	1 cut(s)	541
PceI	AGGCCT	1 cut(s)	879
PctI	GAATGC	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	538, 753
PflMI	CCANNNNNTGG	2 cut(s)	104, 207
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	793
Psp6I	CCWGG	3 cut(s)	250, 354, 458
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	3 cut(s)	250, 354, 458
PspN4I	GGNNCC	2 cut(s)	249, 397
PspPI	GGNCC	3 cut(s)	174, 395, 604
PstI	CTGCAG	1 cut(s)	309
RsaI	GTAC	2 cut(s)	29, 163
RsaNI	GTAC	2 cut(s)	28, 162
SacI	GAGCTC	1 cut(s)	793
SaqAI	TTAA	2 cut(s)	290, 426
Sau3AI	GATC	2 cut(s)	45, 844
Sau96I	GGNCC	3 cut(s)	174, 395, 604
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	4 cut(s)	177, 252, 356, 460
SduI	GDGCHC	2 cut(s)	199, 793
SfaNI	GCATC	2 cut(s)	189, 875
SfcI	CTRYAG	1 cut(s)	305
Sfr274I	CTCGAG	1 cut(s)	686
SinI	GGWCC	1 cut(s)	395
SlaI	CTCGAG	1 cut(s)	686
SmlI	CTYRAG	2 cut(s)	583, 686
SmoI	CTYRAG	2 cut(s)	583, 686
Sse9I	AATT	8 cut(s)	168, 240, 377, 453, 556, 595, 711, 815
SseBI	AGGCCT	1 cut(s)	879
SsiI	CCGC	1 cut(s)	889
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	3 cut(s)	185, 482, 701
SstI	GAGCTC	1 cut(s)	793
StuI	AGGCCT	1 cut(s)	879
StyD4I	CCNGG	4 cut(s)	175, 250, 354, 458
StyI	CCWWGG	4 cut(s)	184, 471, 700, 829
TaaI	ACNGT	4 cut(s)	166, 317, 548, 739
TaiI	ACGT	1 cut(s)	799
TaqI	TCGA	1 cut(s)	687
TasI	AATT	8 cut(s)	168, 240, 377, 453, 556, 595, 711, 815
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	538, 753
Tru1I	TTAA	2 cut(s)	290, 426
Tru9I	TTAA	2 cut(s)	290, 426
TseFI	GTSAC	1 cut(s)	510
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	4 cut(s)	371, 390, 585, 732
Van91I	CCANNNNNTGG	2 cut(s)	104, 207
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	3 cut(s)	240, 377, 595
XbaI	TCTAGA	1 cut(s)	481
XhoI	CTCGAG	1 cut(s)	686
XmaJI	CCTAGG	2 cut(s)	184, 700
XspI	CTAG	3 cut(s)	185, 482, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.