Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003672.1

Orthogroup ID

OG0031278

Physical Location & Seq

Genomic Coordinates Forward (+)

25156 .. 27134

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003672.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgacagaaacttgtacgatggatggagccgttgattggaatggccgccctgcaatccgagggagaactggttcttgggttgctgcaattctcatattaggttgcggtgatgagcaatctccatgtggagaccattcgaattttgaattcggcttgttttacatctccatatatctcattgcactagggaatggaggctaccaacctaccatagctacatttggagcggatcagtttgatgaggacgaccccaaagaaggtcactcgaaaattgccttcttcagctatttctacttggctttgaatcttggctccctcttttctaacacaggattagggtattttgaggataaaggaatatggactgtagggttttgggcatctacaggctctgctggcatggcattgattttgtttctttgcggaactccaaggtataggcattttaagcctcagggcaatcctctttctaggttatgtcacgtactggttgctgcaacaagaaaatggaaggtcaagatcacgtcagatggacatgacttgtatgaggaacacgggaaacaatgctctgaaaatcagagtaggaaaatacttcacacccgaggaatcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0007275 GO:0007568 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0010035 GO:0010038 GO:0010150 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015103 GO:0015112 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0046686 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071705 GO:0071804 GO:0071805 GO:0071944 GO:0090693 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098771 GO:0099402 GO:0099516 GO:1901698 GO:1901700 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

204

Amino Acids

22.56

Weight (kDa)

6.64

Isoelectric Point (pI)

21.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031278)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003672.1_g000004
rosa_samantha	Rh1AG171500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	227
AciI	CCGC	4 cut(s)	46, 105, 227, 423
AclWI	GGATC	1 cut(s)	237
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	139, 146
AcuI	CTGAAG	1 cut(s)	265
AfaI	GTAC	2 cut(s)	16, 486
AfiI	CCNNNNNNNGG	2 cut(s)	36, 257
AgsI	TTSAA	2 cut(s)	146, 304
AjiI	CACGTC	1 cut(s)	525
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AloI	GAACNNNNNNTCC	2 cut(s)	55, 87
AluBI	AGCT	2 cut(s)	215, 285
AluI	AGCT	2 cut(s)	215, 285
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	237
AlwNI	CAGNNNCTG	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	600
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	83, 494
ApoI	RAATTY	2 cut(s)	139, 146
Asp700I	GAANNNNTTC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	600
AxyI	CCTNAGG	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	70, 481
BccI	CCATC	3 cut(s)	13, 17, 524
BceAI	ACGGC	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	2 cut(s)	185, 471
BfmI	CTRYAG	2 cut(s)	366, 384
BisI	GCNGC	3 cut(s)	46, 84, 495
BlsI	GCNGC	3 cut(s)	47, 85, 496
BmeT110I	CYCGRG	1 cut(s)	600
BmgBI	CACGTC	1 cut(s)	525
BmiI	GGNNCC	2 cut(s)	28, 313
BmsI	GCATC	1 cut(s)	389
Bpu14I	TTCGAA	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	484
BsaI	GGTCTC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	58, 431, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 257
Bse1I	ACTGG	2 cut(s)	73, 492
Bse21I	CCTNAGG	1 cut(s)	453
Bse3DI	GCAATG	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	58, 431, 601
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	2 cut(s)	36, 257
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	2 cut(s)	73, 492
BseXI	GCAGC	2 cut(s)	70, 481
BshFI	GGCC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	600
BslI	CCNNNNNNNGG	2 cut(s)	36, 257
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	45
Bso31I	GGTCTC	1 cut(s)	123
BsoBI	CYCGRG	1 cut(s)	600
Bsp119I	TTCGAA	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	229, 519
BspACI	CCGC	4 cut(s)	46, 105, 227, 423
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	28, 313
BspPI	GGATC	1 cut(s)	237
BspT104I	TTCGAA	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	123
BsrBI	CCGCTC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	73, 492
BssECI	CCNNGG	3 cut(s)	58, 431, 601
BssMI	GATC	2 cut(s)	229, 519
BssT1I	CCWWGG	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	367
BstBAI	YACGTR	1 cut(s)	484
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	232, 522
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	229, 519
BstMWI	GCNNNNNNNGC	3 cut(s)	396, 401, 448
BstSFI	CTRYAG	2 cut(s)	366, 384
BstV1I	GCAGC	2 cut(s)	70, 481
Bsu36I	CCTNAGG	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	397
CaiI	CAGNNNCTG	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	15, 485
CviAII	CATG	3 cut(s)	123, 400, 536
CviQI	GTAC	2 cut(s)	15, 485
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	2 cut(s)	231, 521
DpnII	GATC	2 cut(s)	229, 519
EaeI	YGGCCR	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	431
Eco31I	GGTCTC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	265
Eco81I	CCTNAGG	1 cut(s)	453
Eco88I	CYCGRG	1 cut(s)	600
EcoRI	GAATTC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	3 cut(s)	126, 403, 539
FatI	CATG	3 cut(s)	122, 399, 535
Fnu4HI	GCNGC	3 cut(s)	46, 84, 495
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	3 cut(s)	46, 84, 495
FspBI	CTAG	2 cut(s)	185, 471
GluI	GCNGC	3 cut(s)	46, 84, 495
HaeIII	GGCC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	126, 403, 539
HinfI	GANTC	2 cut(s)	304, 606
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	4 cut(s)	59, 529, 571, 579
Hpy188III	TCNNGA	1 cut(s)	517
HpyAV	CCTTC	3 cut(s)	251, 286, 505
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	2 cut(s)	483, 524
HpyCH4V	TGCA	4 cut(s)	53, 86, 182, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	396, 401, 448
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	2 cut(s)	483, 524
Hsp92II	CATG	3 cut(s)	126, 403, 539
Kzo9I	GATC	2 cut(s)	229, 519
LmnI	GCTCC	3 cut(s)	26, 224, 317
LpnPI	CCDG	7 cut(s)	54, 63, 315, 372, 381, 440, 473
Lsp1109I	GCAGC	2 cut(s)	70, 481
LweI	GCATC	1 cut(s)	389
MaeI	CTAG	2 cut(s)	185, 471
MaeII	ACGT	2 cut(s)	483, 524
MaeIII	GTNAC	2 cut(s)	260, 479
MalI	GATC	2 cut(s)	231, 521
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	2 cut(s)	229, 519
MboII	GAAGA	1 cut(s)	271
MluCI	AATT	4 cut(s)	87, 139, 146, 270
MnlI	CCTC	9 cut(s)	53, 188, 235, 326, 340, 462, 474, 541, 596
MroXI	GAANNNNTTC	1 cut(s)	70
MseI	TTAA	1 cut(s)	447
MwoI	GCNNNNNNNGC	3 cut(s)	396, 401, 448
NdeII	GATC	2 cut(s)	229, 519
NlaIII	CATG	3 cut(s)	126, 403, 539
NlaIV	GGNNCC	2 cut(s)	28, 313
NmuCI	GTSAC	2 cut(s)	260, 479
NspV	TTCGAA	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	304, 606
PkrI	GCNGC	3 cut(s)	47, 85, 496
Ppu21I	YACGTR	1 cut(s)	484
PspN4I	GGNNCC	2 cut(s)	28, 313
PstNI	CAGNNNCTG	1 cut(s)	392
RsaI	GTAC	2 cut(s)	16, 486
RsaNI	GTAC	2 cut(s)	15, 485
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	3 cut(s)	46, 84, 495
Sau3AI	GATC	2 cut(s)	229, 519
SfaNI	GCATC	1 cut(s)	389
SfcI	CTRYAG	2 cut(s)	366, 384
SfuI	TTCGAA	1 cut(s)	137
Sse9I	AATT	4 cut(s)	87, 139, 146, 270
SsiI	CCGC	4 cut(s)	46, 105, 227, 423
SspMI	CTAG	2 cut(s)	185, 471
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	2 cut(s)	486, 527
TaqI	TCGA	2 cut(s)	137, 266
TasI	AATT	4 cut(s)	87, 139, 146, 270
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	304, 606
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseFI	GTSAC	2 cut(s)	260, 479
TseI	GCWGC	2 cut(s)	83, 494
Tsp45I	GTSAC	2 cut(s)	260, 479
XapI	RAATTY	2 cut(s)	139, 146
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	2 cut(s)	185, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.