Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0031278

Physical Location & Seq

Genomic Coordinates Reverse (-)

32913048 .. 32913499

Gene Structure 452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG171500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 452 bp

ATGTCCATATATCTCATTGCACTAGGGAATGGAGGCTACCAACCTACCATAGCTACATTTGGAGCGGACCAGTTTGATGAGGACGACCCCAAAGAAAGTCACTCGAAAATTGCCTTCTTCAGCTACTTCTACTTGGCTTTGAATCTTGGCTCCCTCTTTTCTAACACAATATTAGGGTATTTTGAGGATAAAGGAATATGGACTGTAGGGTTTTGGGCATCTACAGGCTCTGCTGGCATGGCATTGATTTTGTTTCTTTGCGGAACTCCAAGGTATAGGCATTTTAAGCCTCAGGGCAATCCTCTTTCTAGGTTATGTCACGTACTGGTTGCTGCAACAAGAAAATGGAAGGTCAAGATCACGTCAGATGGAGATGATCATTTGTATGAAGAACATGGGAAACAATGCTCTGAAAATCAGAGTCGGAAAATACTTCACACCCAAGGAATCAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0007275 GO:0007568 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0010035 GO:0010038 GO:0010150 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015103 GO:0015112 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0046686 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071705 GO:0071804 GO:0071805 GO:0071944 GO:0090693 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098771 GO:0099402 GO:0099516 GO:1901698 GO:1901700 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

150

Amino Acids

16.79

Weight (kDa)

7.0

Isoelectric Point (pI)

19.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 127	3.5e-34	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0031278)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003672.1_g000004
rosa_samantha	Rh1AG171500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	65
AciI	CCGC	2 cut(s)	65, 261
AcuI	CTGAAG	1 cut(s)	103
AfaI	GTAC	1 cut(s)	324
AgsI	TTSAA	1 cut(s)	142
AjiI	CACGTC	1 cut(s)	363
AluBI	AGCT	2 cut(s)	53, 123
AluI	AGCT	2 cut(s)	53, 123
AlwNI	CAGNNNCTG	1 cut(s)	230
ApeKI	GCWGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	362
BclI	TGATCA	1 cut(s)	376
BfaI	CTAG	2 cut(s)	23, 309
BfmI	CTRYAG	2 cut(s)	204, 222
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme18I	GGWCC	1 cut(s)	67
BmgBI	CACGTC	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	151
BmsI	GCATC	1 cut(s)	227
BsaAI	YACGTR	1 cut(s)	322
BsaJI	CCNNGG	2 cut(s)	269, 442
Bse1I	ACTGG	2 cut(s)	70, 330
Bse21I	CCTNAGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	269, 442
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	2 cut(s)	70, 330
BseXI	GCAGC	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	357, 376
BspACI	CCGC	2 cut(s)	65, 261
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	70, 330
BssECI	CCNNGG	2 cut(s)	269, 442
BssMI	GATC	2 cut(s)	357, 376
BssT1I	CCWWGG	2 cut(s)	269, 442
Bst4CI	ACNGT	1 cut(s)	205
BstBAI	YACGTR	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	291
BstKTI	GATC	2 cut(s)	360, 379
BstMBI	GATC	2 cut(s)	357, 376
BstMWI	GCNNNNNNNGC	3 cut(s)	234, 239, 286
BstSFI	CTRYAG	2 cut(s)	204, 222
BstV1I	GCAGC	1 cut(s)	319
Bsu36I	CCTNAGG	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	235
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	2 cut(s)	238, 395
CviJI	RGCY	7 cut(s)	36, 53, 123, 137, 150, 228, 289
CviKI_1	RGCY	7 cut(s)	36, 53, 123, 137, 150, 228, 289
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	2 cut(s)	359, 378
DpnII	GATC	2 cut(s)	357, 376
Eco130I	CCWWGG	2 cut(s)	269, 442
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	103
Eco81I	CCTNAGG	1 cut(s)	291
EcoT14I	CCWWGG	2 cut(s)	269, 442
ErhI	CCWWGG	2 cut(s)	269, 442
FaeI	CATG	2 cut(s)	241, 398
FaiI	YATR	9 cut(s)	8, 10, 50, 199, 239, 276, 316, 387, 396
FatI	CATG	2 cut(s)	237, 394
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	2 cut(s)	23, 309
GluI	GCNGC	1 cut(s)	333
Hin1II	CATG	2 cut(s)	241, 398
HinfI	GANTC	3 cut(s)	142, 421, 447
Hpy188I	TCNGA	4 cut(s)	367, 412, 420, 426
Hpy188III	TCNNGA	1 cut(s)	355
HpyAV	CCTTC	2 cut(s)	124, 343
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	2 cut(s)	321, 362
HpyCH4V	TGCA	2 cut(s)	20, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	234, 239, 286
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	2 cut(s)	321, 362
Hsp92II	CATG	2 cut(s)	241, 398
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	357, 376
LmnI	GCTCC	2 cut(s)	62, 155
LpnPI	CCDG	5 cut(s)	83, 210, 219, 278, 311
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	2 cut(s)	23, 309
MaeII	ACGT	2 cut(s)	321, 362
MaeIII	GTNAC	2 cut(s)	98, 317
MalI	GATC	2 cut(s)	359, 378
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	2 cut(s)	357, 376
MboII	GAAGA	2 cut(s)	109, 401
MluCI	AATT	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	6 cut(s)	26, 73, 164, 178, 300, 312
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	234, 239, 286
NdeII	GATC	2 cut(s)	357, 376
NlaIII	CATG	2 cut(s)	241, 398
NlaIV	GGNNCC	1 cut(s)	151
NmuCI	GTSAC	2 cut(s)	98, 317
PfeI	GAWTC	2 cut(s)	142, 447
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
Ppu21I	YACGTR	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	2 cut(s)	357, 376
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	430
SetI	ASST	8 cut(s)	46, 55, 125, 275, 314, 324, 354, 365
SfaNI	GCATC	1 cut(s)	227
SfcI	CTRYAG	2 cut(s)	204, 222
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	2 cut(s)	65, 261
SspI	AATATT	1 cut(s)	171
SspMI	CTAG	2 cut(s)	23, 309
StyI	CCWWGG	2 cut(s)	269, 442
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	2 cut(s)	324, 365
TaqI	TCGA	1 cut(s)	104
TasI	AATT	1 cut(s)	108
TfiI	GAWTC	2 cut(s)	142, 447
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseFI	GTSAC	2 cut(s)	98, 317
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	2 cut(s)	98, 317
TspDTI	ATGAA	1 cut(s)	402
VpaK11BI	GGWCC	1 cut(s)	67
XspI	CTAG	2 cut(s)	23, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.