Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003683.1

Orthogroup ID

OG0031280

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3614

Gene Structure 3614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003683.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 946 bp

atggaatcatgtgggacggatattgtgttggaaaaagttcctgccaagacacctaaaaaatatgtagctcctcacttaagatcacatgcagggaatgagcttgcagagcatagtcaggtccgtcgacaattactaggccttctaaataggctctcggaatctaatgtggaatccattacaggggaggtttccgccctcatgcgttccattcctcgtggtatcgcctcccagatatttggtgaggaggtattagcctcgtgtgctcatggccctcgtggaaatgaacagttaactttatcttacttgatggtgatacatcaacttacactgaatctgtcgaacaccgtgttgcaaatcgaacacctcgccctcgcggtcaagattgagcttggtgctatggagttccggtggtcaaagcctcgatcgttggcgccggttctaggtctgggtcgaaggacgactctgtcgccggcacctctctctttctctctctctctggcacgaagccgtcaccgggactcgtcccggcagcaggaagcggagaccggtcatccctctccgatctgcactttctctctcatccctcttcgaggtggcggccgggctgctggtagacgggaaattgccggtgatcggaatctggcggccggtgaccggattccggcgaaaattggcctgattccggcgaccgctcaccggattccggcgaagttggccggaatccggctgcctgtgaccggactccggcgaagtcccctatgttttttgagttactgtgaaaggcttgacgtcacccatcatcgccggagcctccgttgcacccagccaagaccgaaattcatcattcagagaaagagagagaataaaggagcttcaaattcttcgcagtttgataaggggaagaaggtagatagctcagagggaaggaagaaagcaatcaaactcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

315

Amino Acids

34.6

Weight (kDa)

10.59

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031280)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003683.1_g000001 Rmu_sc0005956.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	463
AatII	GACGTC	1 cut(s)	792
AccB1I	GGYRCC	2 cut(s)	430, 472
AccBSI	CCGCTC	1 cut(s)	692
AccI	GTMKAC	2 cut(s)	124, 613
AccII	CGCG	1 cut(s)	374
AciI	CCGC	6 cut(s)	192, 374, 539, 597, 644, 690
AcoI	YGGCCR	3 cut(s)	598, 645, 714
AcsI	RAATTY	2 cut(s)	836, 877
AcyI	GRCGYC	2 cut(s)	431, 789
AflII	CTTAAG	1 cut(s)	76
AgeI	ACCGGT	1 cut(s)	545
AgsI	TTSAA	1 cut(s)	876
AluBI	AGCT	5 cut(s)	68, 100, 388, 872, 915
AluI	AGCT	5 cut(s)	68, 100, 388, 872, 915
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	536
AoxI	GGCC	6 cut(s)	136, 268, 598, 645, 673, 714
ApeKI	GCWGC	3 cut(s)	529, 605, 727
ApoI	RAATTY	2 cut(s)	836, 877
AsiGI	ACCGGT	1 cut(s)	545
Asp700I	GAANNNNTTC	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	2 cut(s)	118, 269
AsuC2I	CCSGG	3 cut(s)	515, 526, 602
AsuHPI	GGTGA	7 cut(s)	251, 322, 503, 641, 662, 686, 784
AvaII	GGWCC	1 cut(s)	118
BanI	GGYRCC	2 cut(s)	430, 472
BauI	CACGAG	3 cut(s)	213, 256, 273
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	3 cut(s)	541, 592, 714
BccI	CCATC	2 cut(s)	301, 804
BceAI	ACGGC	1 cut(s)	492
BcnI	CCSGG	3 cut(s)	515, 526, 602
BcoDI	GTCTC	1 cut(s)	536
BfaI	CTAG	2 cut(s)	134, 440
BfoI	RGCGCY	1 cut(s)	434
BfrI	CTTAAG	1 cut(s)	76
BisI	GCNGC	5 cut(s)	530, 598, 606, 645, 728
BlsI	GCNGC	5 cut(s)	531, 599, 607, 646, 729
Bme1390I	CCNGG	3 cut(s)	515, 526, 602
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	118, 269
BmiI	GGNNCC	3 cut(s)	432, 474, 809
BmrFI	CCNGG	3 cut(s)	515, 526, 602
BpuMI	CCSGG	3 cut(s)	515, 526, 602
BsaBI	GATNNNNATC	1 cut(s)	636
BsaHI	GRCGYC	2 cut(s)	431, 789
BsaI	GGTCTC	1 cut(s)	536
BsaWI	WCCGGW	5 cut(s)	405, 545, 654, 696, 737
BsaXI	ACNNNNNCTCC	4 cut(s)	392, 422, 799, 829
Bse118I	RCCGGY	5 cut(s)	433, 469, 545, 626, 647
Bse8I	GATNNNNATC	1 cut(s)	636
BseGI	GGATG	2 cut(s)	550, 579
BseJI	GATNNNNATC	1 cut(s)	636
BseMII	CTCAG	1 cut(s)	930
BseRI	GAGGAG	2 cut(s)	60, 257
BseX3I	CGGCCG	2 cut(s)	598, 645
BseXI	GCAGC	3 cut(s)	541, 592, 714
BseYI	CCCAGC	1 cut(s)	822
BsgI	GTGCAG	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	374
Bsh1285I	CGRYCG	4 cut(s)	425, 601, 648, 690
BshFI	GGCC	6 cut(s)	138, 270, 600, 647, 675, 716
BshNI	GGYRCC	2 cut(s)	430, 472
BshTI	ACCGGT	1 cut(s)	545
BsiEI	CGRYCG	4 cut(s)	425, 601, 648, 690
BsiHKAI	GWGCWC	1 cut(s)	265
BslFI	GGGAC	4 cut(s)	28, 508, 530, 738
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	4 cut(s)	28, 508, 530, 738
BsnI	GGCC	6 cut(s)	138, 270, 600, 647, 675, 716
Bso31I	GGTCTC	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	4 cut(s)	80, 422, 561, 631
BspACI	CCGC	6 cut(s)	192, 374, 539, 597, 644, 690
BspANI	GGCC	6 cut(s)	138, 270, 600, 647, 675, 716
BspCNI	CTCAG	1 cut(s)	929
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	3 cut(s)	432, 474, 809
BspT107I	GGYRCC	2 cut(s)	430, 472
BspTI	CTTAAG	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	692
BsrFI	RCCGGY	5 cut(s)	433, 469, 545, 626, 647
BssAI	RCCGGY	5 cut(s)	433, 469, 545, 626, 647
BssMI	GATC	4 cut(s)	80, 422, 561, 631
BssNI	GRCGYC	2 cut(s)	431, 789
BssSI	CACGAG	3 cut(s)	213, 256, 273
Bst2BI	CACGAG	3 cut(s)	213, 256, 273
Bst4CI	ACNGT	3 cut(s)	288, 346, 776
Bst6I	CTCTTC	1 cut(s)	591
BstACI	GRCGYC	2 cut(s)	431, 789
BstAFI	CTTAAG	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	102, 471
BstDEI	CTNAG	1 cut(s)	916
BstEII	GGTNACC	1 cut(s)	650
BstENI	CCTNNNNNAGG	1 cut(s)	588
BstF5I	GGATG	2 cut(s)	550, 579
BstFNI	CGCG	1 cut(s)	374
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	4 cut(s)	83, 425, 564, 634
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	4 cut(s)	80, 422, 561, 631
BstMCI	CGRYCG	4 cut(s)	425, 601, 648, 690
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 260, 713, 816
BstNSI	RCATGY	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	650
BstSCI	CCNGG	3 cut(s)	513, 524, 600
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	3 cut(s)	541, 592, 714
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstZI	CGGCCG	2 cut(s)	598, 645
BsuRI	GGCC	6 cut(s)	138, 270, 600, 647, 675, 716
BtgZI	GCGATG	1 cut(s)	785
BtsCI	GGATG	2 cut(s)	550, 579
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	102, 471
CfoI	GCGC	1 cut(s)	433
Cfr10I	RCCGGY	5 cut(s)	433, 469, 545, 626, 647
Cfr13I	GGNCC	2 cut(s)	118, 269
CspAI	ACCGGT	1 cut(s)	545
CviAII	CATG	4 cut(s)	9, 86, 199, 266
DdeI	CTNAG	1 cut(s)	916
DinI	GGCGCC	1 cut(s)	432
DpnI	GATC	4 cut(s)	82, 424, 563, 633
DpnII	GATC	4 cut(s)	80, 422, 561, 631
DrdI	GACNNNNNNGTC	1 cut(s)	463
DseDI	GACNNNNNNGTC	1 cut(s)	463
EaeI	YGGCCR	3 cut(s)	598, 645, 714
EagI	CGGCCG	2 cut(s)	598, 645
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
EciI	GGCGGA	1 cut(s)	181
EclXI	CGGCCG	2 cut(s)	598, 645
Eco147I	AGGCCT	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	118
Eco52I	CGGCCG	2 cut(s)	598, 645
Eco91I	GGTNACC	1 cut(s)	650
EcoNI	CCTNNNNNAGG	1 cut(s)	588
EcoO65I	GGTNACC	1 cut(s)	650
EgeI	GGCGCC	1 cut(s)	432
EheI	GGCGCC	1 cut(s)	432
FaeI	CATG	4 cut(s)	12, 89, 202, 269
FaiI	YATR	8 cut(s)	10, 63, 87, 111, 200, 267, 398, 760
FaqI	GGGAC	4 cut(s)	28, 508, 530, 738
FatI	CATG	4 cut(s)	8, 85, 198, 265
FblI	GTMKAC	2 cut(s)	124, 613
Fnu4HI	GCNGC	5 cut(s)	530, 598, 606, 645, 728
FokI	GGATG	2 cut(s)	537, 566
Fsp4HI	GCNGC	5 cut(s)	530, 598, 606, 645, 728
FspBI	CTAG	2 cut(s)	134, 440
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	5 cut(s)	530, 598, 606, 645, 728
GsaI	CCCAGC	1 cut(s)	826
HaeII	RGCGCY	1 cut(s)	434
HaeIII	GGCC	6 cut(s)	138, 270, 600, 647, 675, 716
HhaI	GCGC	1 cut(s)	433
Hin1I	GRCGYC	2 cut(s)	431, 789
Hin1II	CATG	4 cut(s)	12, 89, 202, 269
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HincII	GTYRAC	2 cut(s)	125, 291
HindII	GTYRAC	2 cut(s)	125, 291
HpaI	GTTAAC	1 cut(s)	291
HphI	GGTGA	7 cut(s)	251, 322, 503, 641, 662, 686, 784
Hpy166II	GTNNAC	3 cut(s)	125, 291, 614
Hpy188I	TCNGA	5 cut(s)	157, 561, 636, 849, 919
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	3 cut(s)	125, 291, 614
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	4 cut(s)	149, 447, 898, 918
HpyCH4III	ACNGT	3 cut(s)	288, 346, 776
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	5 cut(s)	89, 104, 352, 567, 819
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 260, 713, 816
HpyF3I	CTNAG	1 cut(s)	916
HpySE526I	ACGT	1 cut(s)	789
Hsp92I	GRCGYC	2 cut(s)	431, 789
Hsp92II	CATG	4 cut(s)	12, 89, 202, 269
HspAI	GCGC	1 cut(s)	431
KasI	GGCGCC	1 cut(s)	430
KroI	GCCGGC	1 cut(s)	469
KroNI	GCCGGC	1 cut(s)	471
KspAI	GTTAAC	1 cut(s)	291
Kzo9I	GATC	4 cut(s)	80, 422, 561, 631
LmnI	GCTCC	3 cut(s)	73, 807, 869
Lsp1109I	GCAGC	3 cut(s)	541, 592, 714
MaeI	CTAG	2 cut(s)	134, 440
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	5 cut(s)	509, 650, 733, 770, 790
MalI	GATC	4 cut(s)	82, 424, 563, 633
MbiI	CCGCTC	1 cut(s)	692
MboI	GATC	4 cut(s)	80, 422, 561, 631
MboII	GAAGA	4 cut(s)	578, 873, 913, 940
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	5 cut(s)	128, 621, 669, 836, 877
Mly113I	GGCGCC	1 cut(s)	431
MlyI	GAGTC	3 cut(s)	454, 512, 735
MmeI	TCCRAC	1 cut(s)	9
MroNI	GCCGGC	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	2 cut(s)	77, 290
MspCI	CTTAAG	1 cut(s)	76
MspR9I	CCNGG	3 cut(s)	515, 526, 602
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	4 cut(s)	106, 260, 713, 816
NaeI	GCCGGC	1 cut(s)	471
NarI	GGCGCC	1 cut(s)	431
NciI	CCSGG	3 cut(s)	515, 526, 602
NdeII	GATC	4 cut(s)	80, 422, 561, 631
NgoMIV	GCCGGC	1 cut(s)	469
NlaIII	CATG	4 cut(s)	12, 89, 202, 269
NlaIV	GGNNCC	3 cut(s)	432, 474, 809
NmuCI	GTSAC	4 cut(s)	509, 650, 733, 790
NspI	RCATGY	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	9 cut(s)	5, 158, 170, 331, 637, 658, 679, 700, 720
PflFI	GACNNNGTC	1 cut(s)	463
PinAI	ACCGGT	1 cut(s)	545
PkrI	GCNGC	5 cut(s)	531, 599, 607, 646, 729
Ple19I	CGATCG	1 cut(s)	425
PleI	GAGTC	3 cut(s)	454, 512, 735
PluTI	GGCGCC	1 cut(s)	434
PpsI	GAGTC	3 cut(s)	454, 512, 735
PspEI	GGTNACC	1 cut(s)	650
PspFI	CCCAGC	1 cut(s)	822
PspN4I	GGNNCC	3 cut(s)	432, 474, 809
PspPI	GGNCC	2 cut(s)	118, 269
PsyI	GACNNNGTC	1 cut(s)	463
PvuI	CGATCG	1 cut(s)	425
SalI	GTCGAC	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	77, 290
SatI	GCNGC	5 cut(s)	530, 598, 606, 645, 728
Sau3AI	GATC	4 cut(s)	80, 422, 561, 631
Sau96I	GGNCC	2 cut(s)	118, 269
SchI	GAGTC	3 cut(s)	454, 512, 735
ScrFI	CCNGG	3 cut(s)	515, 526, 602
SduI	GDGCHC	1 cut(s)	265
SfoI	GGCGCC	1 cut(s)	432
SinI	GGWCC	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	5 cut(s)	128, 621, 669, 836, 877
SseBI	AGGCCT	1 cut(s)	138
SsiI	CCGC	6 cut(s)	192, 374, 539, 597, 644, 690
SspDI	GGCGCC	1 cut(s)	430
SspMI	CTAG	2 cut(s)	134, 440
StuI	AGGCCT	1 cut(s)	138
StyD4I	CCNGG	3 cut(s)	513, 524, 600
TaaI	ACNGT	3 cut(s)	288, 346, 776
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	6 cut(s)	124, 338, 357, 421, 451, 589
TaqII	GACCGA	1 cut(s)	847
TasI	AATT	5 cut(s)	128, 621, 669, 836, 877
TauI	GCSGC	2 cut(s)	600, 647
TfiI	GAWTC	9 cut(s)	5, 158, 170, 331, 637, 658, 679, 700, 720
Tru1I	TTAA	2 cut(s)	77, 290
Tru9I	TTAA	2 cut(s)	77, 290
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	4 cut(s)	509, 650, 733, 790
TseI	GCWGC	3 cut(s)	529, 605, 727
Tsp45I	GTSAC	4 cut(s)	509, 650, 733, 790
TspDTI	ATGAA	2 cut(s)	297, 829
TspGWI	ACGGA	3 cut(s)	32, 110, 803
TspRI	CASTG	1 cut(s)	333
Tth111I	GACNNNGTC	1 cut(s)	463
Vha464I	CTTAAG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	118
XagI	CCTNNNNNAGG	1 cut(s)	588
XapI	RAATTY	2 cut(s)	836, 877
XceI	RCATGY	1 cut(s)	89
XmiI	GTMKAC	2 cut(s)	124, 613
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	2 cut(s)	134, 440
ZraI	GACGTC	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.