Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005956.1

Orthogroup ID

OG0031280

Physical Location & Seq

Genomic Coordinates Forward (+)

39665 .. 40540

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005956.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgattgccaaacattatggtgctgaggtggaatctgaagattttccttccaagtcatcttcgaggaagagacagaagcatagaaagtccttggaggaaacaaaagagggcaacaaggaaggtgatatggacattgagctatctaagccaatggagtcatgtgggatggatattgtgttggaaaaagttcctgccaagacacctaaaaaatatgtagctcctcacttaagatcacatgcagggaatgagcttgcagagcatagtcaggtccgtcgacaattacgaggccttctaaataggctctcggaatctaatgtggaatccattacaggggaggtttccgccctcatgcgttccattcctcgtggtatcgcctcccagatatttggtgaggaggtattagcctcgtgtgctcatggccctcgtggaaatgaacagttaactttatcttacttgatggtgatacatcaacttacagttaagttttccttcttccgtttctttcttggagagcttttttcagatcttttagaacccaatgcctcaggatatgccacttgtttgtttcccaatgagtcagcaagagatgaaattccttcaaacaacatgttaagaccaagatcctcacccttcaattttccccccttcactttgagtttctttgcaagtttcctttctagttccaaatcctcatcggccctagtgttcaagaaacttctcaaactttgtttttggggttctctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

248

Amino Acids

27.78

Weight (kDa)

8.84

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031280)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003683.1_g000001 Rmu_sc0005956.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	274
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	1 cut(s)	615
AcsI	RAATTY	1 cut(s)	591
AcuI	CTGAAG	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	330
AflII	CTTAAG	1 cut(s)	226
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	3 cut(s)	600, 634, 709
AluBI	AGCT	4 cut(s)	139, 218, 250, 514
AluI	AGCT	4 cut(s)	139, 218, 250, 514
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	615
AoxI	GGCC	3 cut(s)	286, 418, 696
ApoI	RAATTY	1 cut(s)	591
Asp700I	GAANNNNTTC	2 cut(s)	42, 186
AspS9I	GGNCC	3 cut(s)	268, 419, 697
AsuHPI	GGTGA	4 cut(s)	134, 401, 472, 618
AvaII	GGWCC	1 cut(s)	268
AxyI	CCTNAGG	1 cut(s)	544
BauI	CACGAG	3 cut(s)	363, 406, 423
Bbv12I	GWGCWC	1 cut(s)	415
BbvCI	CCTCAGC	1 cut(s)	24
BccI	CCATC	2 cut(s)	160, 451
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	2 cut(s)	678, 701
BfrI	CTTAAG	1 cut(s)	226
BglII	AGATCT	1 cut(s)	523
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	3 cut(s)	268, 419, 697
Bpu10I	CCTNAGC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse21I	CCTNAGG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	15, 558
BseRI	GAGGAG	2 cut(s)	210, 407
BshFI	GGCC	3 cut(s)	288, 420, 698
BsiHKAI	GWGCWC	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	64
BsnI	GGCC	3 cut(s)	288, 420, 698
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	3 cut(s)	230, 523, 620
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	3 cut(s)	288, 420, 698
BspCNI	CTCAG	2 cut(s)	16, 557
BspPI	GGATC	1 cut(s)	615
BspTI	CTTAAG	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	3 cut(s)	230, 523, 620
BssSI	CACGAG	3 cut(s)	363, 406, 423
BssT1I	CCWWGG	1 cut(s)	90
Bst2BI	CACGAG	3 cut(s)	363, 406, 423
Bst4CI	ACNGT	2 cut(s)	438, 478
Bst6I	CTCTTC	1 cut(s)	62
BstAFI	CTTAAG	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	3 cut(s)	24, 144, 544
BstF5I	GGATG	1 cut(s)	171
BstKTI	GATC	3 cut(s)	233, 526, 623
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	3 cut(s)	230, 523, 620
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 256, 410
BstNSI	RCATGY	2 cut(s)	239, 610
BstX2I	RGATCY	2 cut(s)	523, 620
BstXI	CCANNNNNNTGG	1 cut(s)	386
BstYI	RGATCY	2 cut(s)	523, 620
Bsu36I	CCTNAGG	1 cut(s)	544
BsuRI	GGCC	3 cut(s)	288, 420, 698
BtsCI	GGATG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	252
Cfr13I	GGNCC	3 cut(s)	268, 419, 697
CviAII	CATG	5 cut(s)	159, 236, 349, 416, 607
DdeI	CTNAG	3 cut(s)	24, 144, 544
DpnI	GATC	3 cut(s)	232, 525, 622
DpnII	GATC	3 cut(s)	230, 523, 620
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	90
Eco147I	AGGCCT	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	57
Eco81I	CCTNAGG	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	5 cut(s)	162, 239, 352, 419, 610
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FatI	CATG	5 cut(s)	158, 235, 348, 415, 606
FblI	GTMKAC	1 cut(s)	274
FokI	GGATG	1 cut(s)	178
FspBI	CTAG	2 cut(s)	678, 701
HaeIII	GGCC	3 cut(s)	288, 420, 698
Hin1II	CATG	5 cut(s)	162, 239, 352, 419, 610
HincII	GTYRAC	2 cut(s)	275, 441
HindII	GTYRAC	2 cut(s)	275, 441
HinfI	GANTC	5 cut(s)	32, 155, 308, 320, 575
HpaI	GTTAAC	1 cut(s)	441
HphI	GGTGA	4 cut(s)	134, 401, 472, 618
Hpy166II	GTNNAC	2 cut(s)	275, 441
Hpy188I	TCNGA	3 cut(s)	37, 307, 523
Hpy188III	TCNNGA	2 cut(s)	546, 709
Hpy8I	GTNNAC	2 cut(s)	275, 441
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	7 cut(s)	57, 113, 299, 499, 606, 640, 655
HpyCH4III	ACNGT	2 cut(s)	438, 478
HpyCH4V	TGCA	3 cut(s)	239, 254, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 256, 410
HpyF3I	CTNAG	3 cut(s)	24, 144, 544
Hsp92II	CATG	5 cut(s)	162, 239, 352, 419, 610
KspAI	GTTAAC	1 cut(s)	441
Kzo9I	GATC	3 cut(s)	230, 523, 620
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	6 cut(s)	204, 225, 251, 315, 392, 531
MaeI	CTAG	2 cut(s)	678, 701
MalI	GATC	3 cut(s)	232, 525, 622
MboI	GATC	3 cut(s)	230, 523, 620
MboII	GAAGA	4 cut(s)	50, 51, 79, 484
MflI	RGATCY	2 cut(s)	523, 620
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	3 cut(s)	278, 591, 634
MlyI	GAGTC	2 cut(s)	164, 584
MmeI	TCCRAC	1 cut(s)	159
MroXI	GAANNNNTTC	2 cut(s)	42, 186
MseI	TTAA	4 cut(s)	227, 440, 480, 611
MslI	CAYNNNNRTG	1 cut(s)	18
MspCI	CTTAAG	1 cut(s)	226
MwoI	GCNNNNNNNGC	3 cut(s)	145, 256, 410
NdeII	GATC	3 cut(s)	230, 523, 620
NlaIII	CATG	5 cut(s)	162, 239, 352, 419, 610
NspI	RCATGY	2 cut(s)	239, 610
PceI	AGGCCT	1 cut(s)	288
PciI	ACATGT	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	1 cut(s)	280
PdmI	GAANNNNTTC	2 cut(s)	42, 186
PfeI	GAWTC	3 cut(s)	32, 308, 320
PleI	GAGTC	2 cut(s)	163, 583
PpsI	GAGTC	2 cut(s)	163, 583
PscI	ACATGT	1 cut(s)	606
PspPI	GGNCC	3 cut(s)	268, 419, 697
PsuI	RGATCY	2 cut(s)	523, 620
RseI	CAYNNNNRTG	1 cut(s)	18
SalI	GTCGAC	1 cut(s)	273
SaqAI	TTAA	4 cut(s)	227, 440, 480, 611
Sau3AI	GATC	3 cut(s)	230, 523, 620
Sau96I	GGNCC	3 cut(s)	268, 419, 697
SchI	GAGTC	2 cut(s)	164, 584
SduI	GDGCHC	1 cut(s)	415
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	3 cut(s)	278, 591, 634
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	2 cut(s)	678, 701
StuI	AGGCCT	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	438, 478
TaqI	TCGA	2 cut(s)	62, 274
TasI	AATT	3 cut(s)	278, 591, 634
TfiI	GAWTC	3 cut(s)	32, 308, 320
Tru1I	TTAA	4 cut(s)	227, 440, 480, 611
Tru9I	TTAA	4 cut(s)	227, 440, 480, 611
TspDTI	ATGAA	2 cut(s)	447, 603
TspGWI	ACGGA	2 cut(s)	260, 485
Vha464I	CTTAAG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	1 cut(s)	591
XceI	RCATGY	2 cut(s)	239, 610
XmiI	GTMKAC	1 cut(s)	274
XmnI	GAANNNNTTC	2 cut(s)	42, 186
XspI	CTAG	2 cut(s)	678, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.