Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003697.1

Orthogroup ID

OG0031281

Physical Location & Seq

Genomic Coordinates Reverse (-)

7911 .. 8312

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003697.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atggaaagggagtgggatgaaacagagaaagtcaggaagagaaatttacctttgcgtgaggctggcgaggaagttgatgacgatgatgatgacaaggacgacggtgactcgttaccctttgcatgtttcatctgcaaacaaacttttgttgatcctgttgtaaccaagtgcaaccactacttctatgagcactgtgcactaaagcatcattcaaagaacaagaagtgctttgtgtgcaacaagccgactcttggcattttcaatacagctcatgagatacgcaaaaggatggctgtagggggcaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

102

Amino Acids

11.89

Weight (kDa)

6.19

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031281)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003697.1_g000002
rosa_samantha	Rh3BG111300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	213, 262
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw21I	GWGCWC	2 cut(s)	192, 199
Alw44I	GTGCAC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	146
ApaLI	GTGCAC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	116
BaeGI	GKGCMC	1 cut(s)	199
Bbv12I	GWGCWC	2 cut(s)	192, 199
BccI	CCATC	1 cut(s)	283
BfmI	CTRYAG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
BseGI	GGATG	2 cut(s)	22, 294
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	192, 199
BslI	CCNNNNNNNGG	1 cut(s)	251
Bsp1286I	GDGCHC	2 cut(s)	192, 199
Bsp143I	GATC	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	271
BspPI	GGATC	1 cut(s)	146
BssMI	GATC	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	104, 194
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	22, 294
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	22, 294
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	64
CciI	TCATGA	1 cut(s)	271
CviAII	CATG	2 cut(s)	123, 272
CviJI	RGCY	4 cut(s)	62, 244, 269, 293
CviKI_1	RGCY	4 cut(s)	62, 244, 269, 293
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
FaeI	CATG	2 cut(s)	126, 275
FaiI	YATR	3 cut(s)	124, 186, 273
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	2 cut(s)	122, 271
FokI	GGATG	2 cut(s)	29, 301
Hin1II	CATG	2 cut(s)	126, 275
HinfI	GANTC	2 cut(s)	107, 247
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188III	TCNNGA	2 cut(s)	34, 272
Hpy8I	GTNNAC	1 cut(s)	197
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4III	ACNGT	2 cut(s)	104, 194
HpyCH4V	TGCA	5 cut(s)	122, 135, 171, 197, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	126, 275
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	3 cut(s)	19, 48, 168
LweI	GCATC	1 cut(s)	214
MaeIII	GTNAC	3 cut(s)	104, 111, 160
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	192, 199
MluCI	AATT	1 cut(s)	43
MlyI	GAGTC	2 cut(s)	101, 241
MnlI	CCTC	2 cut(s)	52, 61
MwoI	GCNNNNNNNGC	1 cut(s)	234
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	126, 275
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	126
PagI	TCATGA	1 cut(s)	271
PleI	GAGTC	2 cut(s)	101, 241
PpsI	GAGTC	2 cut(s)	101, 241
Sau3AI	GATC	1 cut(s)	151
SchI	GAGTC	2 cut(s)	101, 241
SduI	GDGCHC	2 cut(s)	192, 199
SetI	ASST	2 cut(s)	52, 271
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	294
Sse9I	AATT	1 cut(s)	43
TaaI	ACNGT	2 cut(s)	104, 194
TasI	AATT	1 cut(s)	43
TscAI	CASTG	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	33, 118
TspRI	CASTG	1 cut(s)	197
VneI	GTGCAC	1 cut(s)	195
XapI	RAATTY	1 cut(s)	43
XceI	RCATGY	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.