Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0031281

Physical Location & Seq

Genomic Coordinates Forward (+)

9080064 .. 9080642

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG111300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGCCTCTCAGAGCTTCTGCTCACATCAGGGCTTCCAGGCGATTTGATTATTAGCCAGATATCTGTAAGGATTACAAAGAGACTGGTTACTGCAGTTGATGACGATGATGATGACAAGGACGACGGTGACTTGTTACCCTTTGCATGTTTCATCTGCAAACAAACTTTTGTTGATCCTGTTGTAACCAAGTGCAACCACTACTTCTATGAGCACTGTGCACTAAAGCATCATTCAAAGAACAAGAAGTGCTTTGTGTGCAACAAGCCGACTCTTGGCATTTTCAATACAGCTCATGAGATACGCAAAAGGATGGCTGTAGGGGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

110

Amino Acids

12.31

Weight (kDa)

7.63

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	49 - 91	4.9e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0031281)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003697.1_g000002
rosa_samantha	Rh3BG111300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	237, 286
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	2 cut(s)	16, 293
AluI	AGCT	2 cut(s)	16, 293
Alw21I	GWGCWC	2 cut(s)	216, 223
Alw26I	GTCTC	1 cut(s)	76
Alw44I	GTGCAC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	4
ApaLI	GTGCAC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	223
Bbv12I	GWGCWC	2 cut(s)	216, 223
BccI	CCATC	1 cut(s)	307
BciT130I	CCWGG	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	76
BfmI	CTRYAG	2 cut(s)	93, 318
Bme1390I	CCNGG	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	6
BsiHKAI	GWGCWC	2 cut(s)	216, 223
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	216, 223
Bsp143I	GATC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	128, 218
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	318
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	2 cut(s)	93, 318
BstSLI	GKGCMC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	214
CciI	TCATGA	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	2 cut(s)	147, 296
CviJI	RGCY	7 cut(s)	6, 16, 34, 57, 268, 293, 317
CviKI_1	RGCY	7 cut(s)	6, 16, 34, 57, 268, 293, 317
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	37
EcoRV	GATATC	1 cut(s)	63
FaeI	CATG	2 cut(s)	150, 299
FaiI	YATR	3 cut(s)	148, 210, 297
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FatI	CATG	2 cut(s)	146, 295
FokI	GGATG	1 cut(s)	325
HaeIII	GGCC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	150, 299
HinfI	GANTC	1 cut(s)	271
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	1 cut(s)	221
Hpy99I	CGWCG	1 cut(s)	128
HpyCH4III	ACNGT	2 cut(s)	128, 218
HpyCH4V	TGCA	6 cut(s)	95, 146, 159, 195, 221, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	150, 299
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	6 cut(s)	15, 24, 51, 71, 71, 192
LweI	GCATC	1 cut(s)	238
MaeIII	GTNAC	4 cut(s)	88, 128, 135, 184
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MhlI	GDGCHC	2 cut(s)	216, 223
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	258
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	2 cut(s)	150, 299
NmuCI	GTSAC	1 cut(s)	128
NspI	RCATGY	1 cut(s)	150
PagI	TCATGA	1 cut(s)	295
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	97
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	2 cut(s)	216, 223
SetI	ASST	2 cut(s)	18, 295
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	2 cut(s)	93, 318
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	128, 218
TscAI	CASTG	1 cut(s)	221
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	219
XceI	RCATGY	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.