Rmu_sc0003701.1_g000001

DnaJ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003701.1
OG0031010
Physical Location & Seq
Forward (+)
815 .. 2215
1401 bp
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UTR
Exon/CDS
Intron
Rmu_sc0003701.1_g000001.1.cds

Sequence Viewer

Length: 363 bp
atggaagagagagaaactataggagacttaaccggagcccgtcaccggccgccggaatccggtcaccggccgccggaatccggtcaccggccgccggaatccggccaacttttgccggaattaggtcaccggtcgccggattccggcgtttcagagacgagctcattcgccgaaatcaaagcgtcgttccacaaattggagaaacagactcacccgaacctcattcagtccgataacgattccgatgcttctcgccgattcgttcaaatccttgccgacgcttctccccggctggataaaaaacaccgtccttctgtacgggcgcaaaactccgatctgatctcggcaagaactcgccgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

120

Amino Acids

13.39

Weight (kDa)

8.26

Isoelectric Point (pI)

72.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031010)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003701.1_g000001 Rmu_ssc0000217.1_g000011

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 196
AciI CCGC 3 cut(s) 50, 71, 92
AcoI YGGCCR 4 cut(s) 47, 68, 89, 103
AfaI GTAC 1 cut(s) 318
AgeI ACCGGT 1 cut(s) 129
AgsI TTSAA 1 cut(s) 266
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 2 cut(s) 18, 149
AoxI GGCC 4 cut(s) 47, 68, 89, 103
AsiGI ACCGGT 1 cut(s) 129
AspLEI GCGC 1 cut(s) 325
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 5 cut(s) 35, 56, 77, 119, 203
BanII GRGCYC 2 cut(s) 40, 164
Bbv12I GWGCWC 1 cut(s) 164
BceAI ACGGC 1 cut(s) 342
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BcnI CCSGG 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 18, 149
BfmI CTRYAG 1 cut(s) 18
BisI GCNGC 3 cut(s) 50, 71, 92
BlsI GCNGC 3 cut(s) 51, 72, 93
Bme1390I CCNGG 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 289
BmsI GCATC 1 cut(s) 235
BplI GAGNNNNNCTC 2 cut(s) 146, 178
BpuMI CCSGG 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 287
BsaWI WCCGGW 4 cut(s) 32, 59, 80, 129
Bse118I RCCGGY 4 cut(s) 45, 66, 87, 129
BseDI CCNNGG 1 cut(s) 287
BseX3I CGGCCG 3 cut(s) 47, 68, 89
Bsh1285I CGRYCG 4 cut(s) 50, 71, 92, 134
BshFI GGCC 4 cut(s) 49, 70, 91, 105
BshTI ACCGGT 1 cut(s) 129
BsiEI CGRYCG 4 cut(s) 50, 71, 92, 134
BsiHKAI GWGCWC 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 18, 149
BsmBI CGTCTC 1 cut(s) 149
BsnI GGCC 4 cut(s) 49, 70, 91, 105
Bsp1286I GDGCHC 2 cut(s) 40, 164
Bsp143I GATC 2 cut(s) 334, 339
BspACI CCGC 3 cut(s) 50, 71, 92
BspANI GGCC 4 cut(s) 49, 70, 91, 105
BspLI GGNNCC 1 cut(s) 37
BsrFI RCCGGY 4 cut(s) 45, 66, 87, 129
BssAI RCCGGY 4 cut(s) 45, 66, 87, 129
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 2 cut(s) 334, 339
Bst4CI ACNGT 1 cut(s) 308
BstEII GGTNACC 3 cut(s) 62, 83, 125
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 2 cut(s) 337, 342
BstMAI GTCTC 2 cut(s) 18, 149
BstMBI GATC 2 cut(s) 334, 339
BstMCI CGRYCG 4 cut(s) 50, 71, 92, 134
BstPI GGTNACC 3 cut(s) 62, 83, 125
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 18
BstZI CGGCCG 3 cut(s) 47, 68, 89
BsuRI GGCC 4 cut(s) 49, 70, 91, 105
CfoI GCGC 1 cut(s) 325
Cfr10I RCCGGY 4 cut(s) 45, 66, 87, 129
CseI GACGC 2 cut(s) 171, 287
Csp6I GTAC 1 cut(s) 317
CspAI ACCGGT 1 cut(s) 129
CviJI RGCY 7 cut(s) 38, 49, 70, 91, 105, 162, 292
CviKI_1 RGCY 7 cut(s) 38, 49, 70, 91, 105, 162, 292
CviQI GTAC 1 cut(s) 317
DpnI GATC 2 cut(s) 336, 341
DpnII GATC 2 cut(s) 334, 339
EaeI YGGCCR 4 cut(s) 47, 68, 89, 103
EagI CGGCCG 3 cut(s) 47, 68, 89
Ecl136II GAGCTC 1 cut(s) 162
EclXI CGGCCG 3 cut(s) 47, 68, 89
Eco24I GRGCYC 2 cut(s) 40, 164
Eco52I CGGCCG 3 cut(s) 47, 68, 89
Eco53kI GAGCTC 1 cut(s) 162
Eco91I GGTNACC 3 cut(s) 62, 83, 125
EcoICRI GAGCTC 1 cut(s) 162
EcoO65I GGTNACC 3 cut(s) 62, 83, 125
EcoT38I GRGCYC 2 cut(s) 40, 164
Esp3I CGTCTC 1 cut(s) 149
FaiI YATR 1 cut(s) 20
Fnu4HI GCNGC 3 cut(s) 50, 71, 92
FriOI GRGCYC 2 cut(s) 40, 164
Fsp4HI GCNGC 3 cut(s) 50, 71, 92
GlaI GCGC 1 cut(s) 324
GluI GCNGC 3 cut(s) 50, 71, 92
HaeIII GGCC 4 cut(s) 49, 70, 91, 105
HgaI GACGC 2 cut(s) 171, 287
HhaI GCGC 1 cut(s) 325
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 7 cut(s) 56, 77, 98, 140, 208, 239, 258
HphI GGTGA 5 cut(s) 35, 56, 77, 119, 203
Hpy188I TCNGA 5 cut(s) 154, 232, 244, 334, 339
Hpy99I CGWCG 2 cut(s) 187, 281
HpyAV CCTTC 1 cut(s) 321
HpyCH4III ACNGT 1 cut(s) 308
HspAI GCGC 1 cut(s) 323
Kzo9I GATC 2 cut(s) 334, 339
LmnI GCTCC 1 cut(s) 35
LweI GCATC 1 cut(s) 235
MaeIII GTNAC 4 cut(s) 41, 62, 83, 125
MalI GATC 2 cut(s) 336, 341
MboI GATC 2 cut(s) 334, 339
MboII GAAGA 1 cut(s) 17
MhlI GDGCHC 2 cut(s) 40, 164
MluCI AATT 2 cut(s) 119, 194
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 1 cut(s) 230
MseI TTAA 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 289
NciI CCSGG 1 cut(s) 289
NdeII GATC 2 cut(s) 334, 339
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 323
NmuCI GTSAC 4 cut(s) 41, 62, 83, 125
PfeI GAWTC 6 cut(s) 56, 77, 98, 140, 239, 258
PflMI CCANNNNNTGG 1 cut(s) 196
PinAI ACCGGT 1 cut(s) 129
PkrI GCNGC 3 cut(s) 51, 72, 93
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp124BI GAGCTC 1 cut(s) 164
PspEI GGTNACC 3 cut(s) 62, 83, 125
PspN4I GGNNCC 1 cut(s) 37
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SacI GAGCTC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 3 cut(s) 50, 71, 92
Sau3AI GATC 2 cut(s) 334, 339
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 2 cut(s) 40, 164
SetI ASST 3 cut(s) 127, 164, 222
SfaNI GCATC 1 cut(s) 235
SfcI CTRYAG 1 cut(s) 18
Sse9I AATT 2 cut(s) 119, 194
SsiI CCGC 3 cut(s) 50, 71, 92
SstI GAGCTC 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 308
TasI AATT 2 cut(s) 119, 194
TauI GCSGC 3 cut(s) 52, 73, 94
TfiI GAWTC 6 cut(s) 56, 77, 98, 140, 239, 258
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseFI GTSAC 4 cut(s) 41, 62, 83, 125
Tsp45I GTSAC 4 cut(s) 41, 62, 83, 125
Van91I CCANNNNNTGG 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.