Rmu_ssc0000217.1_g000011

DnaJ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000217.1
OG0031010
Physical Location & Seq
Forward (+)
35751 .. 36970
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000217.1_g000011.1.cds

Sequence Viewer

Length: 345 bp
atggaagagagagaaactataggagacttagccggagcccgtcaccggccgccggaatccggccaactttctcaggaatccggtcaccggattcggttcaccgaagagaacgcctgcgagctcttaggcgtttcagagacgagctcattcgccgaaatcaaagcgtcgttccacaaattggcgaaacagactcacccgaacctcgttcagtccgataacgattccgatgcttctcgccgattcgttcaaatccttgacgacgcttctccccggctggataaaaaacaccgtccttctgtacgggcgcaaaactccgatctgatctcggcaagaactcgccgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

114

Amino Acids

12.82

Weight (kDa)

6.97

Isoelectric Point (pI)

66.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031010)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003701.1_g000001 Rmu_ssc0000217.1_g000011

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 178
AciI CCGC 1 cut(s) 50
AcoI YGGCCR 2 cut(s) 47, 61
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 5 cut(s) 45, 52, 59, 87, 178
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 2 cut(s) 121, 144
AluI AGCT 2 cut(s) 121, 144
Alw21I GWGCWC 2 cut(s) 123, 146
Alw26I GTCTC 2 cut(s) 18, 131
AoxI GGCC 2 cut(s) 47, 61
AspLEI GCGC 1 cut(s) 307
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 4 cut(s) 35, 77, 91, 185
BanII GRGCYC 3 cut(s) 40, 123, 146
Bbv12I GWGCWC 2 cut(s) 123, 146
BceAI ACGGC 1 cut(s) 324
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 2 cut(s) 18, 131
BfmI CTRYAG 1 cut(s) 18
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 217
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpuMI CCSGG 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 269
BsaWI WCCGGW 2 cut(s) 80, 87
Bsc4I CCNNNNNNNGG 5 cut(s) 45, 52, 59, 87, 178
Bse118I RCCGGY 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 269
BseLI CCNNNNNNNGG 5 cut(s) 45, 52, 59, 87, 178
BseMII CTCAG 1 cut(s) 86
BseX3I CGGCCG 1 cut(s) 47
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 49, 63
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 123, 146
BsiSI CCGG 7 cut(s) 33, 46, 53, 60, 81, 88, 271
BslI CCNNNNNNNGG 5 cut(s) 45, 52, 59, 87, 178
BsmAI GTCTC 2 cut(s) 18, 131
BsmBI CGTCTC 1 cut(s) 131
BsnI GGCC 2 cut(s) 49, 63
Bsp1286I GDGCHC 3 cut(s) 40, 123, 146
Bsp143I GATC 2 cut(s) 316, 321
BspACI CCGC 1 cut(s) 50
BspANI GGCC 2 cut(s) 49, 63
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 37
BsrFI RCCGGY 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 269
BssMI GATC 2 cut(s) 316, 321
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 115, 119
BstDEI CTNAG 3 cut(s) 28, 72, 124
BstEII GGTNACC 1 cut(s) 83
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 2 cut(s) 319, 324
BstMAI GTCTC 2 cut(s) 18, 131
BstMBI GATC 2 cut(s) 316, 321
BstMCI CGRYCG 1 cut(s) 50
BstPI GGTNACC 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 18
BstZI CGGCCG 1 cut(s) 47
BsuRI GGCC 2 cut(s) 49, 63
Cac8I GCNNGC 2 cut(s) 115, 119
CfoI GCGC 1 cut(s) 307
Cfr10I RCCGGY 1 cut(s) 45
CseI GACGC 2 cut(s) 153, 269
Csp6I GTAC 1 cut(s) 299
CviJI RGCY 7 cut(s) 32, 38, 49, 63, 121, 144, 274
CviKI_1 RGCY 7 cut(s) 32, 38, 49, 63, 121, 144, 274
CviQI GTAC 1 cut(s) 299
DdeI CTNAG 3 cut(s) 28, 72, 124
DpnI GATC 2 cut(s) 318, 323
DpnII GATC 2 cut(s) 316, 321
EaeI YGGCCR 2 cut(s) 47, 61
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Ecl136II GAGCTC 2 cut(s) 121, 144
EclXI CGGCCG 1 cut(s) 47
Eco24I GRGCYC 3 cut(s) 40, 123, 146
Eco52I CGGCCG 1 cut(s) 47
Eco53kI GAGCTC 2 cut(s) 121, 144
Eco91I GGTNACC 1 cut(s) 83
EcoICRI GAGCTC 2 cut(s) 121, 144
EcoO65I GGTNACC 1 cut(s) 83
EcoT38I GRGCYC 3 cut(s) 40, 123, 146
Esp3I CGTCTC 1 cut(s) 131
FaiI YATR 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 50
FriOI GRGCYC 3 cut(s) 40, 123, 146
Fsp4HI GCNGC 1 cut(s) 50
GlaI GCGC 1 cut(s) 306
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 49, 63
HapII CCGG 7 cut(s) 33, 46, 53, 60, 81, 88, 271
HgaI GACGC 2 cut(s) 153, 269
HhaI GCGC 1 cut(s) 307
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 6 cut(s) 56, 77, 91, 190, 221, 240
HpaII CCGG 7 cut(s) 33, 46, 53, 60, 81, 88, 271
HphI GGTGA 4 cut(s) 35, 77, 91, 185
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 5 cut(s) 136, 214, 226, 316, 321
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 2 cut(s) 169, 263
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 1 cut(s) 290
HpyF3I CTNAG 3 cut(s) 28, 72, 124
HspAI GCGC 1 cut(s) 305
Kzo9I GATC 2 cut(s) 316, 321
LmnI GCTCC 1 cut(s) 35
LweI GCATC 1 cut(s) 217
MaeIII GTNAC 2 cut(s) 41, 83
MalI GATC 2 cut(s) 318, 323
MboI GATC 2 cut(s) 316, 321
MboII GAAGA 2 cut(s) 17, 116
MhlI GDGCHC 3 cut(s) 40, 123, 146
MluCI AATT 1 cut(s) 176
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 1 cut(s) 212
MspI CCGG 7 cut(s) 33, 46, 53, 60, 81, 88, 271
MspR9I CCNGG 1 cut(s) 271
NciI CCSGG 1 cut(s) 271
NdeII GATC 2 cut(s) 316, 321
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 305
NmuCI GTSAC 2 cut(s) 41, 83
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 5 cut(s) 56, 77, 91, 221, 240
PflMI CCANNNNNTGG 1 cut(s) 178
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp124BI GAGCTC 2 cut(s) 123, 146
PspEI GGTNACC 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 37
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
SacI GAGCTC 2 cut(s) 123, 146
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 316, 321
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 3 cut(s) 40, 123, 146
SetI ASST 3 cut(s) 123, 146, 204
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 18
Sse9I AATT 1 cut(s) 176
SsiI CCGC 1 cut(s) 50
SstI GAGCTC 2 cut(s) 123, 146
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 290
TasI AATT 1 cut(s) 176
TauI GCSGC 1 cut(s) 52
TfiI GAWTC 5 cut(s) 56, 77, 91, 221, 240
TseFI GTSAC 2 cut(s) 41, 83
Tsp45I GTSAC 2 cut(s) 41, 83
Van91I CCANNNNNTGG 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.