Rmu_sc0003720.1_g000027

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003720.1
OG0031282
Physical Location & Seq
Reverse (-)
141635 .. 142597
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003720.1_g000027.1.cds

Sequence Viewer

Length: 456 bp
atgcatgtagagtccttgatcatgtacagctcatttccaggctcaagtgttgccttagatgagttcgacagagccttttgtggtatcaagtcttttgctagaatagagagtttcattaacaccagtgccaatcctatctcgtcagtgaagttattgaaatctttcatcattgattatctacaattcttcaagaacaccactagttttgcagtggccagtaccaaatgttatgtgttttgtatcactattgatgttgatagactggcctggccaaaacgatttgtttacaaagaattagtttcggccaccaatggctttgcaaatgatccaaggttaggccaagatctaggtcgattattggatggtgtcataggcaaggcaagtgcttacttgtttatgcatacatgcccaagagcagccttgacacacgtctctttggctgcagagaagctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

151

Amino Acids

16.76

Weight (kDa)

8.71

Isoelectric Point (pI)

24.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031282)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003720.1_g000027
rosa_roxburghii Rroxscaffold_3G00224880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 3 cut(s) 213, 269, 303
AfaI GTAC 2 cut(s) 26, 220
AfiI CCNNNNNNNGG 1 cut(s) 335
AflIII ACRYGT 1 cut(s) 427
AgsI TTSAA 2 cut(s) 157, 190
AhlI ACTAGT 1 cut(s) 200
AjiI CACGTC 1 cut(s) 430
AjnI CCWGG 2 cut(s) 37, 266
AluBI AGCT 2 cut(s) 30, 451
AluI AGCT 2 cut(s) 30, 451
Alw26I GTCTC 1 cut(s) 436
AlwI GGATC 1 cut(s) 320
AoxI GGCC 5 cut(s) 213, 264, 269, 303, 337
ApeKI GCWGC 2 cut(s) 416, 440
Asp700I GAANNNNTTC 1 cut(s) 161
BalI TGGCCA 2 cut(s) 215, 271
BbvI GCAGC 2 cut(s) 427, 428
BccI CCATC 1 cut(s) 356
BciT130I CCWGG 2 cut(s) 39, 268
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 436
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 3 cut(s) 99, 201, 347
BfmI CTRYAG 1 cut(s) 441
BglII AGATCT 1 cut(s) 343
BisI GCNGC 2 cut(s) 417, 441
BlsI GCNGC 2 cut(s) 418, 442
Bme1390I CCNGG 2 cut(s) 39, 268
BmgBI CACGTC 1 cut(s) 430
BmrFI CCNGG 2 cut(s) 39, 268
BoxI GACNNNNGTC 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse1I ACTGG 3 cut(s) 123, 216, 267
BseBI CCWGG 2 cut(s) 39, 268
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 335
BseNI ACTGG 3 cut(s) 123, 216, 267
BseXI GCAGC 2 cut(s) 427, 428
BshFI GGCC 5 cut(s) 215, 266, 271, 305, 339
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 436
BsmBI CGTCTC 1 cut(s) 436
BsnI GGCC 5 cut(s) 215, 266, 271, 305, 339
Bsp1407I TGTACA 1 cut(s) 24
Bsp143I GATC 3 cut(s) 18, 325, 343
BspANI GGCC 5 cut(s) 215, 266, 271, 305, 339
BspMAI CTGCAG 1 cut(s) 445
BspPI GGATC 1 cut(s) 320
BsrGI TGTACA 1 cut(s) 24
BsrI ACTGG 3 cut(s) 123, 216, 267
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 3 cut(s) 18, 325, 343
BssT1I CCWWGG 1 cut(s) 329
Bst2UI CCWGG 2 cut(s) 39, 268
BstAUI TGTACA 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 3 cut(s) 21, 328, 346
BstMAI GTCTC 1 cut(s) 436
BstMBI GATC 3 cut(s) 18, 325, 343
BstNI CCWGG 2 cut(s) 39, 268
BstNSI RCATGY 2 cut(s) 8, 408
BstPAI GACNNNNGTC 1 cut(s) 428
BstSCI CCNGG 2 cut(s) 37, 266
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 2 cut(s) 427, 428
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 5 cut(s) 215, 266, 271, 305, 339
BtrI CACGTC 1 cut(s) 430
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 3 cut(s) 130, 150, 216
Csp6I GTAC 2 cut(s) 25, 219
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 3 cut(s) 5, 22, 405
CviQI GTAC 2 cut(s) 25, 219
DdeI CTNAG 1 cut(s) 55
DpnI GATC 3 cut(s) 20, 327, 345
DpnII GATC 3 cut(s) 18, 325, 343
EaeI YGGCCR 3 cut(s) 213, 269, 303
Eco130I CCWWGG 1 cut(s) 329
EcoRII CCWGG 2 cut(s) 37, 266
EcoT14I CCWWGG 1 cut(s) 329
EcoT22I ATGCAT 2 cut(s) 6, 402
ErhI CCWWGG 1 cut(s) 329
Esp3I CGTCTC 1 cut(s) 436
FaeI CATG 3 cut(s) 8, 25, 408
FaiI YATR 7 cut(s) 6, 23, 231, 371, 398, 402, 406
FatI CATG 3 cut(s) 4, 21, 404
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 417, 441
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 417, 441
FspBI CTAG 3 cut(s) 99, 201, 347
GluI GCNGC 2 cut(s) 417, 441
HaeIII GGCC 5 cut(s) 215, 266, 271, 305, 339
Hin1II CATG 3 cut(s) 8, 25, 408
HinfI GANTC 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 455
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 5 cut(s) 4, 209, 320, 400, 443
HpyF3I CTNAG 1 cut(s) 55
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 3 cut(s) 8, 25, 408
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 18, 325, 343
LpnPI CCDG 7 cut(s) 24, 51, 136, 229, 248, 253, 280
Lsp1109I GCAGC 2 cut(s) 427, 428
MaeI CTAG 3 cut(s) 99, 201, 347
MaeII ACGT 1 cut(s) 429
MalI GATC 3 cut(s) 20, 327, 345
MboI GATC 3 cut(s) 18, 325, 343
MboII GAAGA 1 cut(s) 178
MflI RGATCY 1 cut(s) 343
MlsI TGGCCA 2 cut(s) 215, 271
MluCI AATT 2 cut(s) 182, 293
MluNI TGGCCA 2 cut(s) 215, 271
MlyI GAGTC 1 cut(s) 20
Mox20I TGGCCA 2 cut(s) 215, 271
Mph1103I ATGCAT 2 cut(s) 6, 402
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 2 cut(s) 215, 271
MseI TTAA 1 cut(s) 117
Msp20I TGGCCA 2 cut(s) 215, 271
MspR9I CCNGG 2 cut(s) 39, 268
MvaI CCWGG 2 cut(s) 39, 268
NdeII GATC 3 cut(s) 18, 325, 343
NlaIII CATG 3 cut(s) 8, 25, 408
NsiI ATGCAT 2 cut(s) 6, 402
NspI RCATGY 2 cut(s) 8, 408
PdmI GAANNNNTTC 1 cut(s) 161
PkrI GCNGC 2 cut(s) 418, 442
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PshAI GACNNNNGTC 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 37, 266
PspGI CCWGG 2 cut(s) 37, 266
PstI CTGCAG 1 cut(s) 445
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 2 cut(s) 26, 220
RsaNI GTAC 2 cut(s) 25, 219
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 2 cut(s) 417, 441
Sau3AI GATC 3 cut(s) 18, 325, 343
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 39, 268
SetI ASST 5 cut(s) 32, 335, 352, 432, 453
SfcI CTRYAG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SpeI ACTAGT 1 cut(s) 200
Sse9I AATT 2 cut(s) 182, 293
SspMI CTAG 3 cut(s) 99, 201, 347
StyD4I CCNGG 2 cut(s) 37, 266
StyI CCWWGG 1 cut(s) 329
TaiI ACGT 1 cut(s) 432
TaqI TCGA 2 cut(s) 66, 352
TasI AATT 2 cut(s) 182, 293
TatI WGTACW 1 cut(s) 24
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 3 cut(s) 130, 150, 216
TseI GCWGC 2 cut(s) 416, 440
TspDTI ATGAA 2 cut(s) 103, 154
TspRI CASTG 3 cut(s) 130, 150, 216
XceI RCATGY 2 cut(s) 8, 408
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 3 cut(s) 99, 201, 347
Zsp2I ATGCAT 2 cut(s) 6, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.