Rroxscaffold_3G00224880

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0031282
Physical Location & Seq
Forward (+)
8137508 .. 8138491
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224880.1

Sequence Viewer

Length: 465 bp
ATGCATGCAGAGTCCTTGATCATGTACAGCTCATTTCCAGGCTCAAGTGTTGCCTTAGATGAGTTCGACAGAGCCTTTTGTGGTATCAAGTCTATCGCTAGAATAGTTTGGCACTCTAGTTTCATTAACACCAGTGCCAATCCTATCTCGTCAGTGAAGTTATTGAAATCTTTCATCATTGATTATCTACAATTCTTCAAGAACACCACTAGATTTGCAGTGGCCAGTACCAAATGTTATGTGTTTTGTATCACTATTGATGTTGATAGACTGGCCTGGCCAAAACGATTTGTTTACAAAGAATTAGTTTCGGCCACCAATGGCTTTGCAAATGATCCAAGGCTAGGCCAAGATCTAGGAATGCAGATTATTGGATGGTGTCATAAGCAAGGCAAGTGCTTATTTATGCATACATGCCTAACAGCAGCCTTGACACACGCCTCTTTGGCCGTAGAGAAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

154

Amino Acids

17.28

Weight (kDa)

8.96

Isoelectric Point (pI)

30.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031282)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003720.1_g000027
rosa_roxburghii Rroxscaffold_3G00224880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 329
AcoI YGGCCR 4 cut(s) 222, 278, 312, 447
AfaI GTAC 2 cut(s) 26, 229
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 2 cut(s) 166, 199
AjnI CCWGG 2 cut(s) 37, 275
AluBI AGCT 2 cut(s) 30, 460
AluI AGCT 2 cut(s) 30, 460
AlwI GGATC 1 cut(s) 329
AoxI GGCC 6 cut(s) 222, 273, 278, 312, 346, 447
ApeKI GCWGC 1 cut(s) 425
Asp700I GAANNNNTTC 1 cut(s) 170
BalI TGGCCA 2 cut(s) 224, 280
BbvI GCAGC 1 cut(s) 437
BccI CCATC 1 cut(s) 369
BceAI ACGGC 1 cut(s) 434
BciT130I CCWGG 2 cut(s) 39, 277
BclI TGATCA 1 cut(s) 18
BfaI CTAG 5 cut(s) 99, 117, 210, 344, 356
BglI GCCNNNNNGGC 1 cut(s) 446
BglII AGATCT 1 cut(s) 352
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 2 cut(s) 39, 277
BmrFI CCNGG 2 cut(s) 39, 277
BpuEI CTTGAG 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 338
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 3 cut(s) 132, 225, 276
BseBI CCWGG 2 cut(s) 39, 277
BseDI CCNNGG 1 cut(s) 338
BseGI GGATG 1 cut(s) 380
BseLI CCNNNNNNNGG 1 cut(s) 344
BseNI ACTGG 3 cut(s) 132, 225, 276
BseXI GCAGC 1 cut(s) 437
BshFI GGCC 6 cut(s) 224, 275, 280, 314, 348, 449
BslI CCNNNNNNNGG 1 cut(s) 344
BsmI GAATGC 1 cut(s) 366
BsnI GGCC 6 cut(s) 224, 275, 280, 314, 348, 449
Bsp1407I TGTACA 1 cut(s) 24
Bsp143I GATC 3 cut(s) 18, 334, 352
BspANI GGCC 6 cut(s) 224, 275, 280, 314, 348, 449
BspPI GGATC 1 cut(s) 329
BsrGI TGTACA 1 cut(s) 24
BsrI ACTGG 3 cut(s) 132, 225, 276
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 3 cut(s) 18, 334, 352
BssT1I CCWWGG 1 cut(s) 338
Bst2UI CCWGG 2 cut(s) 39, 277
BstAUI TGTACA 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 3 cut(s) 21, 337, 355
BstMBI GATC 3 cut(s) 18, 334, 352
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstNI CCWGG 2 cut(s) 39, 277
BstNSI RCATGY 2 cut(s) 8, 417
BstSCI CCNGG 2 cut(s) 37, 275
BstV1I GCAGC 1 cut(s) 437
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 6 cut(s) 224, 275, 280, 314, 348, 449
BtsCI GGATG 1 cut(s) 380
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 3 cut(s) 139, 159, 225
Cac8I GCNNGC 1 cut(s) 6
Csp6I GTAC 2 cut(s) 25, 228
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 3 cut(s) 5, 22, 414
CviQI GTAC 2 cut(s) 25, 228
DdeI CTNAG 1 cut(s) 55
DpnI GATC 3 cut(s) 20, 336, 354
DpnII GATC 3 cut(s) 18, 334, 352
EaeI YGGCCR 4 cut(s) 222, 278, 312, 447
Eco130I CCWWGG 1 cut(s) 338
EcoRII CCWGG 2 cut(s) 37, 275
EcoT14I CCWWGG 1 cut(s) 338
EcoT22I ATGCAT 2 cut(s) 6, 411
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 3 cut(s) 8, 25, 417
FaiI YATR 7 cut(s) 6, 23, 240, 384, 407, 411, 415
FatI CATG 3 cut(s) 4, 21, 413
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 5 cut(s) 99, 117, 210, 344, 356
GluI GCNGC 1 cut(s) 426
HaeIII GGCC 6 cut(s) 224, 275, 280, 314, 348, 449
Hin1II CATG 3 cut(s) 8, 25, 417
HinfI GANTC 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 464
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 1 cut(s) 295
HpyCH4V TGCA 6 cut(s) 4, 8, 218, 329, 364, 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 1 cut(s) 55
Hsp92II CATG 3 cut(s) 8, 25, 417
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 18, 334, 352
LpnPI CCDG 7 cut(s) 24, 51, 145, 238, 257, 262, 289
Lsp1109I GCAGC 1 cut(s) 437
MaeI CTAG 5 cut(s) 99, 117, 210, 344, 356
MalI GATC 3 cut(s) 20, 336, 354
MboI GATC 3 cut(s) 18, 334, 352
MboII GAAGA 1 cut(s) 187
MflI RGATCY 1 cut(s) 352
MlsI TGGCCA 2 cut(s) 224, 280
MluCI AATT 2 cut(s) 191, 302
MluNI TGGCCA 2 cut(s) 224, 280
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 1 cut(s) 451
Mox20I TGGCCA 2 cut(s) 224, 280
Mph1103I ATGCAT 2 cut(s) 6, 411
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 2 cut(s) 224, 280
MseI TTAA 1 cut(s) 126
Msp20I TGGCCA 2 cut(s) 224, 280
MspR9I CCNGG 2 cut(s) 39, 277
Mva1269I GAATGC 1 cut(s) 366
MvaI CCWGG 2 cut(s) 39, 277
MwoI GCNNNNNNNGC 1 cut(s) 446
NdeII GATC 3 cut(s) 18, 334, 352
NlaIII CATG 3 cut(s) 8, 25, 417
NsiI ATGCAT 2 cut(s) 6, 411
NspI RCATGY 2 cut(s) 8, 417
PaeI GCATGC 1 cut(s) 8
PctI GAATGC 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Psp6I CCWGG 2 cut(s) 37, 275
PspGI CCWGG 2 cut(s) 37, 275
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 2 cut(s) 26, 229
RsaNI GTAC 2 cut(s) 25, 228
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 3 cut(s) 18, 334, 352
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 39, 277
SetI ASST 2 cut(s) 32, 462
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SphI GCATGC 1 cut(s) 8
Sse9I AATT 2 cut(s) 191, 302
SspMI CTAG 5 cut(s) 99, 117, 210, 344, 356
StyD4I CCNGG 2 cut(s) 37, 275
StyI CCWWGG 1 cut(s) 338
TaqI TCGA 1 cut(s) 66
TasI AATT 2 cut(s) 191, 302
TatI WGTACW 1 cut(s) 24
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 3 cut(s) 139, 159, 225
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 2 cut(s) 112, 163
TspRI CASTG 3 cut(s) 139, 159, 225
XceI RCATGY 2 cut(s) 8, 417
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 5 cut(s) 99, 117, 210, 344, 356
Zsp2I ATGCAT 2 cut(s) 6, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.