Rmu_sc0003735.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003735.1
OG0022924
Physical Location & Seq
Forward (+)
15498 .. 16882
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003735.1_g000005.1.cds

Sequence Viewer

Length: 438 bp
atgtgtacgactaatgccattgtgatcgcagcaattgctgaagctgaatatgtctactgcgctcgtcaccgcactaccggcgagttggtaactgtgaaggagttcgaccccaatggtcatcgctttggattgagggaagtggaggtttataaagagctgcctgaaaccgcctacattctgaaggtcttgggccatcactggaaagatggtggaggtattctttgtgtgatttacgagcacaagacttggataagtctccgacaacatctggactgtctctgtcaaaatcgagaccaagttgtcgtagcaaatcagattccaaaggcaccaccgccaccaacaaggatgaccgatgctcaaatccaatcattgatgtatttgcttttcgtcggcatagggaagtgccacttcttgagttgtccccgggcaacgcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.44

Weight (kDa)

8.18

Isoelectric Point (pI)

28.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022924)

Species Orthologous Gene IDs
rosa_laevigata RLG00000015664
rosa_multiflora Rmu_sc0003735.1_g000005 Rmu_sc0008647.1_g000006
rosa_roxburghii Rroxscaffold_7G00176170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AasI GACNNNNNNGTC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 325
AccI GTMKAC 1 cut(s) 54
AccII CGCG 1 cut(s) 433
AciI CCGC 3 cut(s) 70, 168, 332
AcuI CTGAAG 2 cut(s) 60, 200
AfaI GTAC 1 cut(s) 7
AflIII ACRYGT 1 cut(s) 431
AluBI AGCT 2 cut(s) 44, 157
AluI AGCT 2 cut(s) 44, 157
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 3 cut(s) 260, 281, 285
Ama87I CYCGRG 1 cut(s) 423
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 2 cut(s) 29, 157
Asp700I GAANNNNTTC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 2 cut(s) 424, 425
AsuHPI GGTGA 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 423
BanI GGYRCC 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 41, 144
BccI CCATC 2 cut(s) 200, 201
BcnI CCSGG 2 cut(s) 424, 425
BcoDI GTCTC 3 cut(s) 260, 281, 285
BisI GCNGC 2 cut(s) 30, 158
BlsI GCNGC 2 cut(s) 31, 159
Bme1390I CCNGG 2 cut(s) 424, 425
BmeT110I CYCGRG 1 cut(s) 423
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 2 cut(s) 424, 425
BmsI GCATC 1 cut(s) 343
BpuEI CTTGAG 1 cut(s) 433
BpuMI CCSGG 2 cut(s) 424, 425
BsaI GGTCTC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 422, 423
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 422, 423
BseGI GGATG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 41, 144
Bsh1236I CGCG 1 cut(s) 433
BshFI GGCC 1 cut(s) 192
BshNI GGYRCC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 423
BsiSI CCGG 2 cut(s) 78, 424
BslFI GGGAC 1 cut(s) 405
BsmAI GTCTC 3 cut(s) 260, 281, 285
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 1 cut(s) 192
Bso31I GGTCTC 1 cut(s) 285
BsoBI CYCGRG 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 3 cut(s) 70, 168, 332
BspANI GGCC 1 cut(s) 192
BspFNI CGCG 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 325
BspTNI GGTCTC 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 422, 423
BssMI GATC 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 94, 275
BstAPI GCANNNNNTGC 1 cut(s) 35
BstF5I GGATG 1 cut(s) 351
BstFNI CGCG 1 cut(s) 433
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 3 cut(s) 260, 281, 285
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 2 cut(s) 35, 78
BstSCI CCNGG 2 cut(s) 422, 423
BstUI CGCG 1 cut(s) 433
BstV1I GCAGC 2 cut(s) 41, 144
BsuRI GGCC 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 104
BtsCI GGATG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 196
CfoI GCGC 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 190
Cfr9I CCCGGG 1 cut(s) 423
Csp6I GTAC 1 cut(s) 6
CviJI RGCY 3 cut(s) 44, 157, 192
CviKI_1 RGCY 3 cut(s) 44, 157, 192
CviQI GTAC 1 cut(s) 6
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 285
Eco57I CTGAAG 2 cut(s) 60, 200
Eco88I CYCGRG 1 cut(s) 423
FaiI YATR 3 cut(s) 51, 150, 395
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FaqI GGGAC 1 cut(s) 405
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 2 cut(s) 30, 158
FokI GGATG 1 cut(s) 358
Fsp4HI GCNGC 2 cut(s) 30, 158
GlaI GCGC 1 cut(s) 61
GluI GCNGC 2 cut(s) 30, 158
HaeIII GGCC 1 cut(s) 192
HapII CCGG 2 cut(s) 78, 424
HhaI GCGC 1 cut(s) 62
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 1 cut(s) 316
HpaII CCGG 2 cut(s) 78, 424
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 6, 55
Hpy188I TCNGA 3 cut(s) 180, 260, 315
Hpy188III TCNNGA 3 cut(s) 269, 290, 412
Hpy8I GTNNAC 2 cut(s) 6, 55
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 2 cut(s) 91, 175
HpyCH4III ACNGT 2 cut(s) 94, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 78
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 1 cut(s) 24
LpnPI CCDG 4 cut(s) 91, 174, 184, 254
Lsp1109I GCAGC 2 cut(s) 41, 144
LweI GCATC 1 cut(s) 343
MaeIII GTNAC 2 cut(s) 65, 88
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 1 cut(s) 33
MluI ACGCGT 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 3 cut(s) 126, 136, 206
MroXI GAANNNNTTC 1 cut(s) 101
MspI CCGG 2 cut(s) 78, 424
MspR9I CCNGG 2 cut(s) 424, 425
MunI CAATTG 1 cut(s) 33
MvnI CGCG 1 cut(s) 433
MwoI GCNNNNNNNGC 2 cut(s) 35, 78
NciI CCSGG 2 cut(s) 424, 425
NdeII GATC 1 cut(s) 24
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 2 cut(s) 31, 159
PsiI TTATAA 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 190
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SatI GCNGC 2 cut(s) 30, 158
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 190
ScrFI CCNGG 2 cut(s) 424, 425
SduI GDGCHC 1 cut(s) 240
SetI ASST 5 cut(s) 46, 147, 159, 186, 217
SfaNI GCATC 1 cut(s) 343
SmaI CCCGGG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 1 cut(s) 33
SsiI CCGC 3 cut(s) 70, 168, 332
StyD4I CCNGG 2 cut(s) 422, 423
TaaI ACNGT 2 cut(s) 94, 275
TaqI TCGA 2 cut(s) 105, 289
TaqII GACCGA 1 cut(s) 365
TasI AATT 1 cut(s) 33
TfiI GAWTC 1 cut(s) 316
TscAI CASTG 1 cut(s) 203
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 2 cut(s) 29, 157
Tsp45I GTSAC 1 cut(s) 65
TspMI CCCGGG 1 cut(s) 423
TspRI CASTG 1 cut(s) 203
XmaI CCCGGG 1 cut(s) 423
XmiI GTMKAC 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.