Rmu_sc0008647.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008647.1
OG0022924
Physical Location & Seq
Forward (+)
13684 .. 13974
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008647.1_g000006.1.cds

Sequence Viewer

Length: 291 bp
atgtatttctttttcgtagctgttcataagtggcactcttctgggattatgcacagaggcctttgccctgatcgcctgttgatagcttttcgtccaatcagggtttgtctcaccgattttcgatatggaaaatctctgcctatgttgtatggtctcctagatgatggcaatgacaaggaggaggatgagggaggaaacttcacatcacaaagtctaatatttgaaagcgctttccactacactgccccagagctgctaatgggcgccgccaccacacactctggcagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.83

Weight (kDa)

5.88

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022924)

Species Orthologous Gene IDs
rosa_laevigata RLG00000015664
rosa_multiflora Rmu_sc0003735.1_g000005 Rmu_sc0008647.1_g000006
rosa_roxburghii Rroxscaffold_7G00176170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AciI CCGC 1 cut(s) 267
AcyI GRCGYC 1 cut(s) 264
AfeI AGCGCT 1 cut(s) 229
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 3 cut(s) 20, 86, 253
AluI AGCT 3 cut(s) 20, 86, 253
Alw26I GTCTC 2 cut(s) 113, 158
Aor51HI AGCGCT 1 cut(s) 229
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 253
AspLEI GCGC 2 cut(s) 230, 266
AsuHPI GGTGA 1 cut(s) 103
BanI GGYRCC 1 cut(s) 263
BbvI GCAGC 1 cut(s) 240
BccI CCATC 1 cut(s) 158
BcoDI GTCTC 2 cut(s) 113, 158
BfaI CTAG 1 cut(s) 158
BfoI RGCGCY 2 cut(s) 231, 267
BisI GCNGC 2 cut(s) 254, 267
BlsI GCNGC 2 cut(s) 255, 268
BmiI GGNNCC 1 cut(s) 265
BsaHI GRCGYC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 175
BseGI GGATG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 240
BshFI GGCC 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 263
BsmAI GTCTC 2 cut(s) 113, 158
BsnI GGCC 1 cut(s) 60
Bso31I GGTCTC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 265
BspT107I GGYRCC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 175
BssMI GATC 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 264
BstF5I GGATG 1 cut(s) 190
BstH2I RGCGCY 2 cut(s) 231, 267
BstHHI GCGC 2 cut(s) 230, 266
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 2 cut(s) 113, 158
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 240
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
CfoI GCGC 2 cut(s) 230, 266
CviJI RGCY 4 cut(s) 20, 60, 86, 253
CviKI_1 RGCY 4 cut(s) 20, 60, 86, 253
DinI GGCGCC 1 cut(s) 265
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco147I AGGCCT 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 158
Eco47III AGCGCT 1 cut(s) 229
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
FaiI YATR 5 cut(s) 27, 50, 126, 143, 150
Fnu4HI GCNGC 2 cut(s) 254, 267
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 254, 267
FspBI CTAG 1 cut(s) 158
GlaI GCGC 2 cut(s) 229, 265
GluI GCNGC 2 cut(s) 254, 267
HaeII RGCGCY 2 cut(s) 231, 267
HaeIII GGCC 1 cut(s) 60
HhaI GCGC 2 cut(s) 230, 266
Hin1I GRCGYC 1 cut(s) 264
Hin6I GCGC 2 cut(s) 228, 264
HinP1I GCGC 2 cut(s) 228, 264
HphI GGTGA 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 264
HspAI GCGC 2 cut(s) 228, 264
KasI GGCGCC 1 cut(s) 263
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 6 cut(s) 27, 81, 85, 89, 261, 267
Lsp1109I GCAGC 1 cut(s) 240
MaeI CTAG 1 cut(s) 158
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 1 cut(s) 30
Mly113I GGCGCC 1 cut(s) 264
MnlI CCTC 5 cut(s) 50, 172, 175, 181, 185
MwoI GCNNNNNNNGC 1 cut(s) 72
NarI GGCGCC 1 cut(s) 264
NdeII GATC 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 265
PceI AGGCCT 1 cut(s) 60
PkrI GCNGC 2 cut(s) 255, 268
PluTI GGCGCC 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 265
SatI GCNGC 2 cut(s) 254, 267
Sau3AI GATC 1 cut(s) 70
SetI ASST 3 cut(s) 22, 88, 255
SfoI GGCGCC 1 cut(s) 265
SgeI CNNG 7 cut(s) 54, 80, 88, 112, 170, 187, 260
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 1 cut(s) 267
SspDI GGCGCC 1 cut(s) 263
SspI AATATT 1 cut(s) 219
SspMI CTAG 1 cut(s) 158
StuI AGGCCT 1 cut(s) 60
TaqI TCGA 1 cut(s) 121
TauI GCSGC 1 cut(s) 269
TscAI CASTG 1 cut(s) 247
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 14
TspRI CASTG 1 cut(s) 247
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.