Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003743.1

Orthogroup ID

OG0023566

Physical Location & Seq

Genomic Coordinates Forward (+)

56650 .. 58386

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003743.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgagttcaggtatcacattgataattttgaaagttcaggagcactcctactgcgtctactccgccttcggtgactgtacctcacgcgtctcggacgtgcgtgagcctagatcctccatcatcatcccggtgcacgagttcgagatcctctcttgcgatttgaacaagtacgacgactgtgtcatcgccaccgtcttcgtcgacaaatcgatcaaggtttggaacgtcagatccattggagctccgattttggcactggcgacggttctgattgctagatgggtcaatgggacttgggacttgaagcagtttgagaaaagtggcaagactgactgggatgctgttattgatgctgaggctaggaggagaaaatggctccaggataacccagaatcgtccagtaatgataaccctatacttttcgacacctcaattgtaccttggtgggcatgggtaaagagataccatttacctgaagctgagctcactactgcaaaaatagcttttaatgacagtttttttatggcattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009889 GO:0009891 GO:0009893 GO:0010380 GO:0010468 GO:0010556 GO:0016020 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019899 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046136 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051193 GO:0051194 GO:0051234 GO:0051252 GO:0055035 GO:0055085 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0090056 GO:0140110 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1902326 GO:1902930 GO:1902932 GO:1903506 GO:1904963 GO:1904964 GO:1904965 GO:1904966 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

177

Amino Acids

20.22

Weight (kDa)

5.37

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510
rosa_multiflora	Rmu_sc0003743.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccI	GTMKAC	2 cut(s)	57, 201
AccII	CGCG	1 cut(s)	87
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	3 cut(s)	105, 139, 225
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	3 cut(s)	79, 170, 438
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	3 cut(s)	31, 163, 304
AjiI	CACGTC	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	378
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
AluBI	AGCT	4 cut(s)	242, 479, 484, 503
AluI	AGCT	4 cut(s)	242, 479, 484, 503
Alw21I	GWGCWC	4 cut(s)	45, 135, 244, 486
Alw26I	GTCTC	1 cut(s)	94
Alw44I	GTGCAC	1 cut(s)	131
AlwI	GGATC	3 cut(s)	105, 139, 225
ApaLI	GTGCAC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	135
BanII	GRGCYC	2 cut(s)	244, 486
BauI	CACGAG	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	4 cut(s)	45, 135, 244, 486
BbvCI	CCTCAGC	1 cut(s)	354
BccI	CCATC	2 cut(s)	125, 273
BciT130I	CCWGG	1 cut(s)	380
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	3 cut(s)	108, 276, 360
BlpI	GCTNAGC	1 cut(s)	480
Bme1390I	CCNGG	2 cut(s)	128, 380
BmgBI	CACGTC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	377
BmrFI	CCNGG	2 cut(s)	128, 380
BmrI	ACTGGG	1 cut(s)	343
BmsI	GCATC	2 cut(s)	328, 340
BmuI	ACTGGG	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	187
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
BpmI	CTGGAG	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	354
Bpu1102I	GCTNAGC	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	440
Bse1I	ACTGG	3 cut(s)	261, 338, 399
BseBI	CCWGG	1 cut(s)	380
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	2 cut(s)	123, 343
BseMII	CTCAG	2 cut(s)	345, 471
BseNI	ACTGG	3 cut(s)	261, 338, 399
BseRI	GAGGAG	1 cut(s)	379
BseSI	GKGCMC	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	87
BshVI	ATCGAT	1 cut(s)	209
BsiHKAI	GWGCWC	4 cut(s)	45, 135, 244, 486
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	2 cut(s)	304, 311
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	2 cut(s)	304, 311
Bsp1286I	GDGCHC	4 cut(s)	45, 135, 244, 486
Bsp143I	GATC	4 cut(s)	110, 144, 210, 230
Bsp1720I	GCTNAGC	1 cut(s)	480
BspACI	CCGC	1 cut(s)	63
BspCNI	CTCAG	2 cut(s)	346, 472
BspDI	ATCGAT	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	377
BspPI	GGATC	3 cut(s)	105, 139, 225
BsrI	ACTGG	3 cut(s)	261, 338, 399
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	4 cut(s)	110, 144, 210, 230
BssSI	CACGAG	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	440
Bst2BI	CACGAG	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	5 cut(s)	77, 179, 193, 265, 515
BstDEI	CTNAG	2 cut(s)	354, 480
BstF5I	GGATG	2 cut(s)	123, 343
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	4 cut(s)	113, 147, 213, 233
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	4 cut(s)	110, 144, 210, 230
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	126, 378
BstSLI	GKGCMC	1 cut(s)	135
BstUI	CGCG	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	3 cut(s)	110, 144, 230
BstYI	RGATCY	3 cut(s)	110, 144, 230
Bsu15I	ATCGAT	1 cut(s)	209
BsuTUI	ATCGAT	1 cut(s)	209
BtgZI	GCGATG	1 cut(s)	169
BtrI	CACGTC	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	123, 343
BtsIMutI	CAGTG	1 cut(s)	254
ClaI	ATCGAT	1 cut(s)	209
CseI	GACGC	2 cut(s)	43, 76
Csp6I	GTAC	3 cut(s)	78, 169, 437
CviAII	CATG	1 cut(s)	450
CviJI	RGCY	7 cut(s)	106, 242, 359, 376, 479, 484, 503
CviKI_1	RGCY	7 cut(s)	106, 242, 359, 376, 479, 484, 503
CviQI	GTAC	3 cut(s)	78, 169, 437
DdeI	CTNAG	2 cut(s)	354, 480
DpnI	GATC	4 cut(s)	112, 146, 212, 232
DpnII	GATC	4 cut(s)	110, 144, 210, 230
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	2 cut(s)	242, 484
Eco130I	CCWWGG	1 cut(s)	440
Eco24I	GRGCYC	2 cut(s)	244, 486
Eco53kI	GAGCTC	2 cut(s)	242, 484
Eco57I	CTGAAG	1 cut(s)	495
EcoICRI	GAGCTC	2 cut(s)	242, 484
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	440
EcoT38I	GRGCYC	2 cut(s)	244, 486
ErhI	CCWWGG	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	1 cut(s)	453
FaiI	YATR	3 cut(s)	416, 451, 524
FaqI	GGGAC	2 cut(s)	304, 311
FatI	CATG	1 cut(s)	449
FblI	GTMKAC	2 cut(s)	57, 201
FokI	GGATG	2 cut(s)	110, 350
FriOI	GRGCYC	2 cut(s)	244, 486
FspBI	CTAG	3 cut(s)	108, 276, 360
GsuI	CTGGAG	1 cut(s)	362
HapII	CCGG	1 cut(s)	128
HgaI	GACGC	2 cut(s)	43, 76
Hin1II	CATG	1 cut(s)	453
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	3 cut(s)	58, 133, 202
Hpy188I	TCNGA	4 cut(s)	94, 230, 246, 270
Hpy188III	TCNNGA	2 cut(s)	38, 142
Hpy8I	GTNNAC	3 cut(s)	58, 133, 202
Hpy99I	CGWCG	3 cut(s)	176, 203, 265
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	5 cut(s)	77, 179, 193, 265, 515
HpyCH4IV	ACGT	2 cut(s)	96, 225
HpyCH4V	TGCA	2 cut(s)	133, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	2 cut(s)	354, 480
HpySE526I	ACGT	2 cut(s)	96, 225
Hsp92II	CATG	1 cut(s)	453
Kzo9I	GATC	4 cut(s)	110, 144, 210, 230
LmnI	GCTCC	4 cut(s)	40, 239, 247, 381
LpnPI	CCDG	9 cut(s)	23, 141, 242, 319, 365, 392, 402, 412, 486
LweI	GCATC	2 cut(s)	328, 340
MaeI	CTAG	3 cut(s)	108, 276, 360
MaeII	ACGT	2 cut(s)	96, 225
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	4 cut(s)	112, 146, 212, 232
MboI	GATC	4 cut(s)	110, 144, 210, 230
MboII	GAAGA	1 cut(s)	187
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	3 cut(s)	110, 144, 230
MhlI	GDGCHC	4 cut(s)	45, 135, 244, 486
MluCI	AATT	2 cut(s)	24, 432
MluI	ACGCGT	1 cut(s)	85
MnlI	CCTC	6 cut(s)	91, 124, 158, 349, 357, 439
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	1 cut(s)	128
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	128, 380
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	500
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	4 cut(s)	110, 144, 210, 230
NlaIII	CATG	1 cut(s)	453
NlaIV	GGNNCC	1 cut(s)	377
NmuCI	GTSAC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	392
PflFI	GACNNNGTC	1 cut(s)	179
PfoI	TCCNGGA	1 cut(s)	378
Psp124BI	GAGCTC	2 cut(s)	244, 486
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	377
PsuI	RGATCY	3 cut(s)	110, 144, 230
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	3 cut(s)	79, 170, 438
RsaNI	GTAC	3 cut(s)	78, 169, 437
RseI	CAYNNNNRTG	1 cut(s)	128
SacI	GAGCTC	2 cut(s)	244, 486
SalI	GTCGAC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	507
Sau3AI	GATC	4 cut(s)	110, 144, 210, 230
ScrFI	CCNGG	2 cut(s)	128, 380
SduI	GDGCHC	4 cut(s)	45, 135, 244, 486
SfaNI	GCATC	2 cut(s)	328, 340
SmiMI	CAYNNNNRTG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	24, 432
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	3 cut(s)	108, 276, 360
SstI	GAGCTC	2 cut(s)	244, 486
StyD4I	CCNGG	2 cut(s)	126, 378
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	5 cut(s)	77, 179, 193, 265, 515
TaiI	ACGT	2 cut(s)	99, 228
TaqI	TCGA	4 cut(s)	141, 201, 209, 423
TasI	AATT	2 cut(s)	24, 432
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	71
TspRI	CASTG	1 cut(s)	261
Tth111I	GACNNNGTC	1 cut(s)	179
VneI	GTGCAC	1 cut(s)	131
XmiI	GTMKAC	2 cut(s)	57, 201
XspI	CTAG	3 cut(s)	108, 276, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.