Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003748.1

Orthogroup ID

OG0025569

Physical Location & Seq

Genomic Coordinates Forward (+)

4636 .. 5103

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ctggccttagccagccgcaaccccactaagctctcccaaaccctcaactgggccaccgccccaaacccacctctttccattcctatcctcaccgccgacaccaccgaccctccatccatccactgcctcttctcccaaacctgcctcatcctcaactgcgtgggccccttccgcctctacgacgaccccatcgttggtgcatgcgttgagattggttgtgattatcttgacttatccggagagccagagttcatggataggatggaggccagctatttagataaggcggcggagaagggctcgttggtcattttggcttgtgggtttgactctgttccagcggagtttgggttgatgttcaactcgaggcagtgggtgggggcggcggtgccgaatagggtagaggcttatctgagcttggagtctgagaagagaagtgttgggaagtgggaacttcgggatgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

155

Amino Acids

16.95

Weight (kDa)

4.54

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025569)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003748.1_g000002 Rmu_sc0005433.1_g000010
rosa_samantha	Rh4AG191900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	149
AccB1I	GGYRCC	1 cut(s)	388
AccIII	TCCGGA	1 cut(s)	236
AciI	CCGC	9 cut(s)	16, 57, 93, 172, 287, 290, 341, 383, 386
AfiI	CCNNNNNNNGG	3 cut(s)	48, 49, 194
AgsI	TTSAA	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	3 cut(s)	31, 273, 417
AluI	AGCT	3 cut(s)	31, 273, 417
Ama87I	CYCGRG	1 cut(s)	364
Aor13HI	TCCGGA	1 cut(s)	236
AoxI	GGCC	4 cut(s)	3, 51, 163, 267
ApaI	GGGCCC	1 cut(s)	167
AspS9I	GGNCC	3 cut(s)	51, 163, 164
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	364
BaeGI	GKGCMC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	388
BanII	GRGCYC	2 cut(s)	167, 302
BccI	CCATC	4 cut(s)	121, 125, 197, 256
BfuAI	ACCTGC	1 cut(s)	149
BisI	GCNGC	3 cut(s)	16, 288, 384
BlsI	GCNGC	3 cut(s)	17, 289, 385
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	3 cut(s)	51, 163, 164
BmiI	GGNNCC	3 cut(s)	165, 166, 390
BmrI	ACTGGG	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
Bpu10I	CCTNAGC	1 cut(s)	7
BsaWI	WCCGGW	1 cut(s)	236
BsaXI	ACNNNNNCTCC	4 cut(s)	94, 124, 335, 365
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 49, 194
Bse1I	ACTGG	1 cut(s)	53
BseAI	TCCGGA	1 cut(s)	236
BseGI	GGATG	5 cut(s)	113, 117, 147, 267, 466
BseLI	CCNNNNNNNGG	3 cut(s)	48, 49, 194
BseMII	CTCAG	2 cut(s)	404, 417
BseNI	ACTGG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	167
BshFI	GGCC	4 cut(s)	5, 53, 165, 269
BshNI	GGYRCC	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	3 cut(s)	48, 49, 194
BsnI	GGCC	4 cut(s)	5, 53, 165, 269
BsoBI	CYCGRG	1 cut(s)	364
Bsp120I	GGGCCC	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	167, 302
Bsp13I	TCCGGA	1 cut(s)	236
BspACI	CCGC	9 cut(s)	16, 57, 93, 172, 287, 290, 341, 383, 386
BspANI	GGCC	4 cut(s)	5, 53, 165, 269
BspCNI	CTCAG	2 cut(s)	405, 418
BspEI	TCCGGA	1 cut(s)	236
BspLI	GGNNCC	3 cut(s)	165, 166, 390
BspMI	ACCTGC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	53
Bst6I	CTCTTC	2 cut(s)	134, 425
BstC8I	GCNNGC	3 cut(s)	13, 202, 271
BstDEI	CTNAG	4 cut(s)	7, 27, 413, 426
BstF5I	GGATG	5 cut(s)	113, 117, 147, 267, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	167
BsuRI	GGCC	4 cut(s)	5, 53, 165, 269
BtsCI	GGATG	5 cut(s)	113, 117, 147, 267, 466
BtsI	GCAGTG	2 cut(s)	121, 377
BtsIMutI	CAGTG	2 cut(s)	121, 377
BveI	ACCTGC	1 cut(s)	149
Cac8I	GCNNGC	3 cut(s)	13, 202, 271
Cfr13I	GGNCC	3 cut(s)	51, 163, 164
CviAII	CATG	2 cut(s)	201, 253
DdeI	CTNAG	4 cut(s)	7, 27, 413, 426
Eam1104I	CTCTTC	2 cut(s)	134, 425
EarI	CTCTTC	2 cut(s)	134, 425
EciI	GGCGGA	2 cut(s)	161, 305
Eco24I	GRGCYC	2 cut(s)	167, 302
Eco88I	CYCGRG	1 cut(s)	364
EcoO109I	RGGNCCY	1 cut(s)	164
EcoT38I	GRGCYC	2 cut(s)	167, 302
FaeI	CATG	2 cut(s)	204, 256
FaiI	YATR	2 cut(s)	202, 254
FatI	CATG	2 cut(s)	200, 252
Fnu4HI	GCNGC	3 cut(s)	16, 288, 384
FokI	GGATG	4 cut(s)	100, 104, 134, 274
FriOI	GRGCYC	2 cut(s)	167, 302
Fsp4HI	GCNGC	3 cut(s)	16, 288, 384
GluI	GCNGC	3 cut(s)	16, 288, 384
HaeIII	GGCC	4 cut(s)	5, 53, 165, 269
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	2 cut(s)	204, 256
HinfI	GANTC	2 cut(s)	329, 422
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	414, 427
Hpy188III	TCNNGA	3 cut(s)	227, 237, 458
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	178, 289
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	4 cut(s)	7, 27, 413, 426
Hsp92II	CATG	2 cut(s)	204, 256
Kpn2I	TCCGGA	1 cut(s)	236
LpnPI	CCDG	7 cut(s)	25, 34, 154, 250, 258, 283, 351
MboII	GAAGA	2 cut(s)	121, 442
MhlI	GDGCHC	2 cut(s)	167, 302
MlyI	GAGTC	2 cut(s)	323, 431
MroI	TCCGGA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	171
NlaIII	CATG	2 cut(s)	204, 256
NlaIV	GGNNCC	3 cut(s)	165, 166, 390
NspI	RCATGY	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	204
PaeR7I	CTCGAG	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PkrI	GCNGC	3 cut(s)	17, 289, 385
PleI	GAGTC	2 cut(s)	323, 430
PpsI	GAGTC	2 cut(s)	323, 430
PspN4I	GGNNCC	3 cut(s)	165, 166, 390
PspOMI	GGGCCC	1 cut(s)	163
PspPI	GGNCC	3 cut(s)	51, 163, 164
PspXI	VCTCGAGB	1 cut(s)	364
SatI	GCNGC	3 cut(s)	16, 288, 384
Sau96I	GGNCC	3 cut(s)	51, 163, 164
SchI	GAGTC	2 cut(s)	323, 431
SduI	GDGCHC	2 cut(s)	167, 302
SetI	ASST	5 cut(s)	33, 73, 143, 275, 419
Sfr274I	CTCGAG	1 cut(s)	364
SlaI	CTCGAG	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
SphI	GCATGC	1 cut(s)	204
SsiI	CCGC	9 cut(s)	16, 57, 93, 172, 287, 290, 341, 383, 386
TaqI	TCGA	1 cut(s)	365
TauI	GCSGC	3 cut(s)	18, 290, 386
TscAI	CASTG	2 cut(s)	128, 377
TspDTI	ATGAA	1 cut(s)	241
TspRI	CASTG	2 cut(s)	128, 377
XceI	RCATGY	1 cut(s)	204
XhoI	CTCGAG	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.