Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005433.1

Orthogroup ID

OG0025569

Physical Location & Seq

Genomic Coordinates Reverse (-)

26277 .. 27405

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005433.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgactagtcgcaacttgaaagagtacctcaaaagattgcatcatggtatagttgaacggcttattcatgcctttcacaagatgaaggagatgatcaccaggaatggccattccaccgaggacgaagacatggaccaaatcctagcactgtacaccacgtcggttatttgcattaaaagaatgcacaagacgacacagtctgttaacaagatcactctacaccataacaaacttctcaaccatgtcagaccttcccaaccctccctacgatctcaccatcctcagcgcctccggcttcaccggaaagtacgtagtcaaagaagcctcaagttcctcaacatttcctcctttcttctcaagtctctggccttagccggccgcaaccccactaagctctcccaaaccctcaactgggccaccgccccaaacccacctccttccattcctatcctcaccgccgacaccaccgaccctctgtccatccactgcctcttctcccaaacctgcctcatcctcaactgcgtgggccccttccgcctctacggcgaccccatcgttggtgcatgcgttgagattggttgtgattatcttgacttatccggagagccggagttcatggataggatggaggccagctatttagataaggcggcggagaagggctggttggtcattttggcttgtgggtttgactctgttccagcggagtttaggttgatgttcaactcgaggcagtgggtgggggcggctgtgccgaatagggtagaggcttatctgagcttggagtttgagaagagaagtgttgggaagtgggaacttcgggatgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

276

Amino Acids

31.51

Weight (kDa)

9.27

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025569)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003748.1_g000002 Rmu_sc0005433.1_g000010
rosa_samantha	Rh4AG191900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	196
Acc36I	ACCTGC	1 cut(s)	512
AccIII	TCCGGA	1 cut(s)	599
AciI	CCGC	8 cut(s)	379, 420, 456, 535, 650, 653, 704, 746
AcoI	YGGCCR	2 cut(s)	106, 376
AfaI	GTAC	3 cut(s)	26, 152, 309
AfiI	CCNNNNNNNGG	3 cut(s)	411, 412, 557
AgsI	TTSAA	3 cut(s)	19, 56, 724
AhdI	GACNNNNNGTC	1 cut(s)	475
AhlI	ACTAGT	1 cut(s)	5
AjiI	CACGTC	1 cut(s)	159
AjnI	CCWGG	1 cut(s)	98
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AluBI	AGCT	3 cut(s)	394, 636, 780
AluI	AGCT	3 cut(s)	394, 636, 780
Alw26I	GTCTC	1 cut(s)	366
Ama87I	CYCGRG	1 cut(s)	727
Aor13HI	TCCGGA	1 cut(s)	599
AoxI	GGCC	6 cut(s)	106, 366, 376, 414, 526, 630
ApaI	GGGCCC	1 cut(s)	530
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	4 cut(s)	133, 414, 526, 527
AsuHPI	GGTGA	4 cut(s)	88, 266, 290, 445
AvaI	CYCGRG	1 cut(s)	727
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	530
BalI	TGGCCA	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	282
BccI	CCATC	4 cut(s)	285, 488, 560, 619
BceAI	ACGGC	2 cut(s)	74, 559
BciT130I	CCWGG	1 cut(s)	100
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	366
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	2 cut(s)	6, 143
BfoI	RGCGCY	1 cut(s)	289
BfuAI	ACCTGC	1 cut(s)	512
BglI	GCCNNNNNGGC	1 cut(s)	543
BisI	GCNGC	3 cut(s)	379, 651, 747
BlsI	GCNGC	3 cut(s)	380, 652, 748
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	133
BmeRI	GACNNNNNGTC	1 cut(s)	475
BmeT110I	CYCGRG	1 cut(s)	727
BmgBI	CACGTC	1 cut(s)	159
BmgT120I	GGNCC	4 cut(s)	133, 414, 526, 527
BmiI	GGNNCC	2 cut(s)	528, 529
BmrFI	CCNGG	1 cut(s)	100
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	1 cut(s)	49
BmuI	ACTGGG	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	132
Bpu10I	CCTNAGC	2 cut(s)	282, 370
BpuEI	CTTGAG	2 cut(s)	311, 341
BsaAI	YACGTR	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	2 cut(s)	300, 599
BsaXI	ACNNNNNCTCC	4 cut(s)	329, 359, 698, 728
Bsc4I	CCNNNNNNNGG	3 cut(s)	411, 412, 557
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	416
BseAI	TCCGGA	1 cut(s)	599
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	5 cut(s)	277, 480, 510, 630, 829
BseLI	CCNNNNNNNGG	3 cut(s)	411, 412, 557
BseMII	CTCAG	2 cut(s)	296, 767
BseNI	ACTGG	1 cut(s)	416
BseSI	GKGCMC	1 cut(s)	530
BseX3I	CGGCCG	1 cut(s)	376
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	6 cut(s)	108, 368, 378, 416, 528, 632
BsiEI	CGRYCG	1 cut(s)	379
BsiHKCI	CYCGRG	1 cut(s)	727
BsiSI	CCGG	5 cut(s)	292, 301, 375, 600, 608
BslI	CCNNNNNNNGG	3 cut(s)	411, 412, 557
BsmAI	GTCTC	1 cut(s)	366
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	6 cut(s)	108, 368, 378, 416, 528, 632
BsoBI	CYCGRG	1 cut(s)	727
Bsp120I	GGGCCC	1 cut(s)	526
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp13I	TCCGGA	1 cut(s)	599
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	93, 210, 269
BspACI	CCGC	8 cut(s)	379, 420, 456, 535, 650, 653, 704, 746
BspANI	GGCC	6 cut(s)	108, 368, 378, 416, 528, 632
BspCNI	CTCAG	2 cut(s)	295, 768
BspEI	TCCGGA	1 cut(s)	599
BspLI	GGNNCC	2 cut(s)	528, 529
BspMI	ACCTGC	1 cut(s)	512
BsrFI	RCCGGY	1 cut(s)	374
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	416
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	3 cut(s)	93, 210, 269
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	150, 198
Bst6I	CTCTTC	2 cut(s)	497, 788
BstAUI	TGTACA	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	311
BstC8I	GCNNGC	3 cut(s)	376, 565, 634
BstDEI	CTNAG	4 cut(s)	282, 370, 390, 776
BstF5I	GGATG	5 cut(s)	277, 480, 510, 630, 829
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	3 cut(s)	96, 213, 272
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	3 cut(s)	93, 210, 269
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 534, 543
BstNI	CCWGG	1 cut(s)	100
BstNSI	RCATGY	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	98
BstSLI	GKGCMC	1 cut(s)	530
BstSNI	TACGTA	1 cut(s)	311
BstV2I	GAAGAC	1 cut(s)	132
BstZI	CGGCCG	1 cut(s)	376
BsuRI	GGCC	6 cut(s)	108, 368, 378, 416, 528, 632
BtrI	CACGTC	1 cut(s)	159
BtsCI	GGATG	5 cut(s)	277, 480, 510, 630, 829
BtsI	GCAGTG	2 cut(s)	484, 740
BtsIMutI	CAGTG	3 cut(s)	146, 484, 740
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	3 cut(s)	376, 565, 634
CfoI	GCGC	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	4 cut(s)	133, 414, 526, 527
Csp6I	GTAC	3 cut(s)	25, 151, 308
CviAII	CATG	6 cut(s)	44, 68, 130, 242, 564, 616
CviQI	GTAC	3 cut(s)	25, 151, 308
DdeI	CTNAG	4 cut(s)	282, 370, 390, 776
DpnI	GATC	3 cut(s)	95, 212, 271
DpnII	GATC	3 cut(s)	93, 210, 269
DrdI	GACNNNNNNGTC	1 cut(s)	196
DriI	GACNNNNNGTC	1 cut(s)	475
DseDI	GACNNNNNNGTC	1 cut(s)	196
EaeI	YGGCCR	2 cut(s)	106, 376
EagI	CGGCCG	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	497, 788
Eam1105I	GACNNNNNGTC	1 cut(s)	475
EarI	CTCTTC	2 cut(s)	497, 788
EciI	GGCGGA	2 cut(s)	524, 668
EclXI	CGGCCG	1 cut(s)	376
Eco105I	TACGTA	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	133
Eco52I	CGGCCG	1 cut(s)	376
Eco88I	CYCGRG	1 cut(s)	727
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	530
FaeI	CATG	6 cut(s)	47, 71, 133, 245, 567, 619
FaiI	YATR	8 cut(s)	45, 50, 69, 131, 225, 243, 565, 617
FatI	CATG	6 cut(s)	43, 67, 129, 241, 563, 615
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	379, 651, 747
FokI	GGATG	4 cut(s)	264, 467, 497, 637
FriOI	GRGCYC	1 cut(s)	530
Fsp4HI	GCNGC	3 cut(s)	379, 651, 747
FspBI	CTAG	2 cut(s)	6, 143
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	3 cut(s)	379, 651, 747
HaeII	RGCGCY	1 cut(s)	289
HaeIII	GGCC	6 cut(s)	108, 368, 378, 416, 528, 632
HapII	CCGG	5 cut(s)	292, 301, 375, 600, 608
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	6 cut(s)	47, 71, 133, 245, 567, 619
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	692
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	5 cut(s)	292, 301, 375, 600, 608
HphI	GGTGA	4 cut(s)	88, 266, 290, 445
Hpy166II	GTNNAC	2 cut(s)	153, 205
Hpy188I	TCNGA	2 cut(s)	248, 777
Hpy188III	TCNNGA	3 cut(s)	590, 600, 821
Hpy8I	GTNNAC	2 cut(s)	153, 205
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	5 cut(s)	79, 261, 447, 541, 652
HpyCH4III	ACNGT	2 cut(s)	150, 198
HpyCH4IV	ACGT	2 cut(s)	158, 310
HpyCH4V	TGCA	4 cut(s)	40, 171, 184, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 534, 543
HpyF3I	CTNAG	4 cut(s)	282, 370, 390, 776
HpySE526I	ACGT	2 cut(s)	158, 310
Hsp92II	CATG	6 cut(s)	47, 71, 133, 245, 567, 619
HspAI	GCGC	1 cut(s)	286
Kpn2I	TCCGGA	1 cut(s)	599
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	93
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	93, 210, 269
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	6, 143
MaeII	ACGT	2 cut(s)	158, 310
MalI	GATC	3 cut(s)	95, 212, 271
MboI	GATC	3 cut(s)	93, 210, 269
MboII	GAAGA	4 cut(s)	137, 344, 484, 805
MhlI	GDGCHC	1 cut(s)	530
MlsI	TGGCCA	1 cut(s)	108
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	686
Mox20I	TGGCCA	1 cut(s)	108
MroI	TCCGGA	1 cut(s)	599
MroNI	GCCGGC	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	2 cut(s)	174, 204
Msp20I	TGGCCA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	5 cut(s)	292, 301, 375, 600, 608
MspR9I	CCNGG	1 cut(s)	100
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	3 cut(s)	292, 534, 543
NaeI	GCCGGC	1 cut(s)	376
NdeII	GATC	3 cut(s)	93, 210, 269
NgoMIV	GCCGGC	1 cut(s)	374
NlaIII	CATG	6 cut(s)	47, 71, 133, 245, 567, 619
NlaIV	GGNNCC	2 cut(s)	528, 529
NspI	RCATGY	1 cut(s)	567
PaeI	GCATGC	1 cut(s)	567
PaeR7I	CTCGAG	1 cut(s)	727
PctI	GAATGC	1 cut(s)	186
PdiI	GCCGGC	1 cut(s)	376
PflFI	GACNNNGTC	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	380, 652, 748
PleI	GAGTC	1 cut(s)	686
PpsI	GAGTC	1 cut(s)	686
Ppu21I	YACGTR	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	528, 529
PspOMI	GGGCCC	1 cut(s)	526
PspPI	GGNCC	4 cut(s)	133, 414, 526, 527
PspXI	VCTCGAGB	1 cut(s)	727
PsyI	GACNNNGTC	1 cut(s)	196
RsaI	GTAC	3 cut(s)	26, 152, 309
RsaNI	GTAC	3 cut(s)	25, 151, 308
SaqAI	TTAA	2 cut(s)	174, 204
SatI	GCNGC	3 cut(s)	379, 651, 747
Sau3AI	GATC	3 cut(s)	93, 210, 269
Sau96I	GGNCC	4 cut(s)	133, 414, 526, 527
SchI	GAGTC	1 cut(s)	686
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	530
SfaNI	GCATC	1 cut(s)	49
Sfr274I	CTCGAG	1 cut(s)	727
SinI	GGWCC	1 cut(s)	133
SlaI	CTCGAG	1 cut(s)	727
SmlI	CTYRAG	3 cut(s)	326, 356, 727
SmoI	CTYRAG	3 cut(s)	326, 356, 727
SnaBI	TACGTA	1 cut(s)	311
SpeI	ACTAGT	1 cut(s)	5
SphI	GCATGC	1 cut(s)	567
SsiI	CCGC	8 cut(s)	379, 420, 456, 535, 650, 653, 704, 746
SspMI	CTAG	2 cut(s)	6, 143
StyD4I	CCNGG	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	150, 198
TaiI	ACGT	2 cut(s)	161, 313
TaqI	TCGA	1 cut(s)	728
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	3 cut(s)	381, 653, 749
Tru1I	TTAA	2 cut(s)	174, 204
Tru9I	TTAA	2 cut(s)	174, 204
TscAI	CASTG	3 cut(s)	153, 491, 740
TspDTI	ATGAA	3 cut(s)	56, 98, 604
TspRI	CASTG	3 cut(s)	153, 491, 740
Tth111I	GACNNNGTC	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	133
XceI	RCATGY	1 cut(s)	567
XhoI	CTCGAG	1 cut(s)	727
XspI	CTAG	2 cut(s)	6, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.