Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0025569

Physical Location & Seq

Genomic Coordinates Forward (+)

47289661 .. 47290789

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG191900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGACTAGTCGCAACTTGAAAGAGTACCTCAAAAGATTGCATCATGGTATAGTTGAACGGCTTATTCATGCCTTTCACAAGATGAAGGAGATGATCACCAGGAATGGCCATTCCACCGAGGACGAAGACATGGACCAAATCCTAGCACTGTACACCACGTCGGTTATTTGCATTAAAAGAATGCACAAGACGACACGTCTCAACCATGTCAGACCTTCCCAACCCTCCCTACGATCTCACCATCCTCAGCGCCTCCGGCTTCACCGGAAAGTACGTAGTCAAAGAAGCCTCAAGTTCCTCAACATTTCCTCCTTTCTTCTCAAGTCTCTGGCCTTAGCCGGCCGCAACCCCACTAAGCTCTCCCAAACCCTCAACTGGGCCACCGCCCCAAACCCACCTCCTTCCATTCCTATCCTCACCGCCGACACCACCGACCCTCTGTCCATCCACTGCCTCTTCTCCCAAACCTGCCTCATCCTCAACTGCGTGGGCCCCTTCCGCCTCTACGGCGACCCCATCGTTGGTGCATGCGTTGAGATTGGTTGTGATTATCTTGACTTATCCGGAGAGCCGGAGTTCATGGATAGGATGGAGGCCAGCTATTTAGATAAGGCGGCGGAGAAGGGCTGGTTGGTCATTTTGGCTTGTGGGTTTGACTCTGTTCCAGCGGAGTTTAGGTTGATGTTCAACTCGAGGCAGTGGGTGGGGGCGGCGGTGCCGAATAGGGTAGAGGCTTATCTGAGCTTGGAGTTTGAGAAGAGAAGTGTTGGGAAGTGGGAACTTCGGGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

264

Amino Acids

30.15

Weight (kDa)

9.19

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025569)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003748.1_g000002 Rmu_sc0005433.1_g000010
rosa_samantha	Rh4AG191900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	476
AccB1I	GGYRCC	1 cut(s)	715
AccIII	TCCGGA	1 cut(s)	563
AciI	CCGC	9 cut(s)	343, 384, 420, 499, 614, 617, 668, 710, 713
AcoI	YGGCCR	2 cut(s)	106, 340
AfaI	GTAC	3 cut(s)	26, 152, 273
AfiI	CCNNNNNNNGG	3 cut(s)	375, 376, 521
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	19, 56, 688
AhdI	GACNNNNNGTC	2 cut(s)	195, 439
AhlI	ACTAGT	1 cut(s)	5
AjiI	CACGTC	2 cut(s)	159, 197
AjnI	CCWGG	1 cut(s)	98
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
AluBI	AGCT	3 cut(s)	358, 600, 744
AluI	AGCT	3 cut(s)	358, 600, 744
Alw26I	GTCTC	2 cut(s)	203, 330
Ama87I	CYCGRG	1 cut(s)	691
Aor13HI	TCCGGA	1 cut(s)	563
AoxI	GGCC	6 cut(s)	106, 330, 340, 378, 490, 594
ApaI	GGGCCC	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	4 cut(s)	133, 378, 490, 491
AsuHPI	GGTGA	4 cut(s)	88, 230, 254, 409
AvaI	CYCGRG	1 cut(s)	691
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	494
BalI	TGGCCA	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	246
BccI	CCATC	4 cut(s)	249, 452, 524, 583
BceAI	ACGGC	2 cut(s)	74, 523
BciT130I	CCWGG	1 cut(s)	100
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	203, 330
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	2 cut(s)	6, 143
BfoI	RGCGCY	1 cut(s)	253
BfuAI	ACCTGC	1 cut(s)	476
BglI	GCCNNNNNGGC	1 cut(s)	507
BisI	GCNGC	3 cut(s)	343, 615, 711
BlsI	GCNGC	3 cut(s)	344, 616, 712
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	133
BmeRI	GACNNNNNGTC	2 cut(s)	195, 439
BmeT110I	CYCGRG	1 cut(s)	691
BmgBI	CACGTC	2 cut(s)	159, 197
BmgT120I	GGNCC	4 cut(s)	133, 378, 490, 491
BmiI	GGNNCC	3 cut(s)	492, 493, 717
BmrFI	CCNGG	1 cut(s)	100
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	1 cut(s)	49
BmuI	ACTGGG	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	132
Bpu10I	CCTNAGC	2 cut(s)	246, 334
BpuEI	CTTGAG	2 cut(s)	275, 305
BsaAI	YACGTR	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	2 cut(s)	264, 563
BsaXI	ACNNNNNCTCC	4 cut(s)	293, 323, 662, 692
Bsc4I	CCNNNNNNNGG	3 cut(s)	375, 376, 521
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	380
BseAI	TCCGGA	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	5 cut(s)	241, 444, 474, 594, 793
BseLI	CCNNNNNNNGG	3 cut(s)	375, 376, 521
BseMII	CTCAG	2 cut(s)	260, 731
BseNI	ACTGG	1 cut(s)	380
BseSI	GKGCMC	1 cut(s)	494
BseX3I	CGGCCG	1 cut(s)	340
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	6 cut(s)	108, 332, 342, 380, 492, 596
BshNI	GGYRCC	1 cut(s)	715
BsiEI	CGRYCG	1 cut(s)	343
BsiHKCI	CYCGRG	1 cut(s)	691
BsiSI	CCGG	5 cut(s)	256, 265, 339, 564, 572
BslI	CCNNNNNNNGG	3 cut(s)	375, 376, 521
BsmAI	GTCTC	2 cut(s)	203, 330
BsmBI	CGTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	6 cut(s)	108, 332, 342, 380, 492, 596
BsoBI	CYCGRG	1 cut(s)	691
Bsp120I	GGGCCC	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp13I	TCCGGA	1 cut(s)	563
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	93, 233
BspACI	CCGC	9 cut(s)	343, 384, 420, 499, 614, 617, 668, 710, 713
BspANI	GGCC	6 cut(s)	108, 332, 342, 380, 492, 596
BspCNI	CTCAG	2 cut(s)	259, 732
BspEI	TCCGGA	1 cut(s)	563
BspLI	GGNNCC	3 cut(s)	492, 493, 717
BspMI	ACCTGC	1 cut(s)	476
BspT107I	GGYRCC	1 cut(s)	715
BsrFI	RCCGGY	1 cut(s)	338
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	2 cut(s)	93, 233
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	2 cut(s)	461, 752
BstAUI	TGTACA	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	340, 529, 598
BstDEI	CTNAG	4 cut(s)	246, 334, 354, 740
BstF5I	GGATG	5 cut(s)	241, 444, 474, 594, 793
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	2 cut(s)	96, 236
BstMAI	GTCTC	2 cut(s)	203, 330
BstMBI	GATC	2 cut(s)	93, 233
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 498, 507
BstNI	CCWGG	1 cut(s)	100
BstNSI	RCATGY	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	98
BstSLI	GKGCMC	1 cut(s)	494
BstSNI	TACGTA	1 cut(s)	275
BstV2I	GAAGAC	1 cut(s)	132
BstZI	CGGCCG	1 cut(s)	340
BsuRI	GGCC	6 cut(s)	108, 332, 342, 380, 492, 596
BtrI	CACGTC	2 cut(s)	159, 197
BtsCI	GGATG	5 cut(s)	241, 444, 474, 594, 793
BtsI	GCAGTG	2 cut(s)	448, 704
BtsIMutI	CAGTG	3 cut(s)	146, 448, 704
BveI	ACCTGC	1 cut(s)	476
Cac8I	GCNNGC	3 cut(s)	340, 529, 598
CfoI	GCGC	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	4 cut(s)	133, 378, 490, 491
Csp6I	GTAC	3 cut(s)	25, 151, 272
CviAII	CATG	6 cut(s)	44, 68, 130, 206, 528, 580
CviQI	GTAC	3 cut(s)	25, 151, 272
DdeI	CTNAG	4 cut(s)	246, 334, 354, 740
DpnI	GATC	2 cut(s)	95, 235
DpnII	GATC	2 cut(s)	93, 233
DriI	GACNNNNNGTC	2 cut(s)	195, 439
EaeI	YGGCCR	2 cut(s)	106, 340
EagI	CGGCCG	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	461, 752
Eam1105I	GACNNNNNGTC	2 cut(s)	195, 439
EarI	CTCTTC	2 cut(s)	461, 752
EciI	GGCGGA	2 cut(s)	488, 632
EclXI	CGGCCG	1 cut(s)	340
Eco105I	TACGTA	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	133
Eco52I	CGGCCG	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	691
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	494
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	6 cut(s)	47, 71, 133, 209, 531, 583
FaiI	YATR	7 cut(s)	45, 50, 69, 131, 207, 529, 581
FatI	CATG	6 cut(s)	43, 67, 129, 205, 527, 579
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	343, 615, 711
FokI	GGATG	4 cut(s)	228, 431, 461, 601
FriOI	GRGCYC	1 cut(s)	494
Fsp4HI	GCNGC	3 cut(s)	343, 615, 711
FspBI	CTAG	2 cut(s)	6, 143
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	3 cut(s)	343, 615, 711
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	6 cut(s)	108, 332, 342, 380, 492, 596
HapII	CCGG	5 cut(s)	256, 265, 339, 564, 572
HhaI	GCGC	1 cut(s)	252
Hin1II	CATG	6 cut(s)	47, 71, 133, 209, 531, 583
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HinfI	GANTC	1 cut(s)	656
HpaII	CCGG	5 cut(s)	256, 265, 339, 564, 572
HphI	GGTGA	4 cut(s)	88, 230, 254, 409
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	2 cut(s)	212, 741
Hpy188III	TCNNGA	3 cut(s)	554, 564, 785
Hpy8I	GTNNAC	1 cut(s)	153
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	5 cut(s)	79, 225, 411, 505, 616
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	3 cut(s)	158, 196, 274
HpyCH4V	TGCA	4 cut(s)	40, 171, 184, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 498, 507
HpyF3I	CTNAG	4 cut(s)	246, 334, 354, 740
HpySE526I	ACGT	3 cut(s)	158, 196, 274
Hsp92II	CATG	6 cut(s)	47, 71, 133, 209, 531, 583
HspAI	GCGC	1 cut(s)	250
Kpn2I	TCCGGA	1 cut(s)	563
KroI	GCCGGC	1 cut(s)	338
KroNI	GCCGGC	1 cut(s)	340
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	93, 233
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	6, 143
MaeII	ACGT	3 cut(s)	158, 196, 274
MalI	GATC	2 cut(s)	95, 235
MboI	GATC	2 cut(s)	93, 233
MboII	GAAGA	4 cut(s)	137, 308, 448, 769
MhlI	GDGCHC	1 cut(s)	494
MlsI	TGGCCA	1 cut(s)	108
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	650
Mox20I	TGGCCA	1 cut(s)	108
MroI	TCCGGA	1 cut(s)	563
MroNI	GCCGGC	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	668
MspI	CCGG	5 cut(s)	256, 265, 339, 564, 572
MspR9I	CCNGG	1 cut(s)	100
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	3 cut(s)	256, 498, 507
NaeI	GCCGGC	1 cut(s)	340
NdeII	GATC	2 cut(s)	93, 233
NgoMIV	GCCGGC	1 cut(s)	338
NlaIII	CATG	6 cut(s)	47, 71, 133, 209, 531, 583
NlaIV	GGNNCC	3 cut(s)	492, 493, 717
NspI	RCATGY	1 cut(s)	531
PaeI	GCATGC	1 cut(s)	531
PaeR7I	CTCGAG	1 cut(s)	691
PctI	GAATGC	1 cut(s)	186
PdiI	GCCGGC	1 cut(s)	340
PkrI	GCNGC	3 cut(s)	344, 616, 712
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
Ppu21I	YACGTR	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	3 cut(s)	492, 493, 717
PspOMI	GGGCCC	1 cut(s)	490
PspPI	GGNCC	4 cut(s)	133, 378, 490, 491
PspXI	VCTCGAGB	1 cut(s)	691
RsaI	GTAC	3 cut(s)	26, 152, 273
RsaNI	GTAC	3 cut(s)	25, 151, 272
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	3 cut(s)	343, 615, 711
Sau3AI	GATC	2 cut(s)	93, 233
Sau96I	GGNCC	4 cut(s)	133, 378, 490, 491
SchI	GAGTC	1 cut(s)	650
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	494
SfaNI	GCATC	1 cut(s)	49
Sfr274I	CTCGAG	1 cut(s)	691
SinI	GGWCC	1 cut(s)	133
SlaI	CTCGAG	1 cut(s)	691
SmlI	CTYRAG	3 cut(s)	290, 320, 691
SmoI	CTYRAG	3 cut(s)	290, 320, 691
SnaBI	TACGTA	1 cut(s)	275
SpeI	ACTAGT	1 cut(s)	5
SphI	GCATGC	1 cut(s)	531
SsiI	CCGC	9 cut(s)	343, 384, 420, 499, 614, 617, 668, 710, 713
SspMI	CTAG	2 cut(s)	6, 143
StyD4I	CCNGG	1 cut(s)	98
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	3 cut(s)	161, 199, 277
TaqI	TCGA	1 cut(s)	692
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	3 cut(s)	345, 617, 713
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	3 cut(s)	153, 455, 704
TspDTI	ATGAA	3 cut(s)	56, 98, 568
TspRI	CASTG	3 cut(s)	153, 455, 704
VpaK11BI	GGWCC	1 cut(s)	133
XceI	RCATGY	1 cut(s)	531
XhoI	CTCGAG	1 cut(s)	691
XspI	CTAG	2 cut(s)	6, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.