Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003748.1

Orthogroup ID

OG0031167

Physical Location & Seq

Genomic Coordinates Reverse (-)

74430 .. 75596

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ctgaaacctgcagctgcaagggcccttaatgaggggcatgaaaagcaagaaacaaggcctctcagacagaggctgttggttgtggctaacaggttacccgtctctgctattaggagaggtgaagattcatggtctttggagataagtgctgggggtctggtcactgcccttttgggtgtaaaggagtttgaggcaaggtggattggatgggcaggggtaaatgtgccagatgatattggacagagggcacttactaaagctctagctgaaaagctgcagaagtgtatccccgtcttccttgatgaggagattgttcatcaatattacaatggctattgcaacaatattttgtggccccttttccgttaccttgggcttccacaagaagatcgacttgctaccaatcggagtttccagtcgcaggtttctgcatataagaaggcaaatcaaatgtttgcagatgtagttactgagcactatgaagagggtgatgttgtttggtgccatgactaccatcttatgtttcttccaaaatgcttgaaggaatataacaacaaaatgaaagtcggctggtttcttcacactccctttccttcctctgaaattcataggacactgccatcacgatcagagctcctgcgctcagttcttgcagctgatttagttgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003825 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009311 GO:0009312 GO:0009743 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0016051 GO:0016311 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033554 GO:0034637 GO:0035251 GO:0042221 GO:0042546 GO:0042578 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007 GO:0070413 GO:0070887 GO:0071310 GO:0071322 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

223

Amino Acids

25.46

Weight (kDa)

7.85

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_20	PF00982	24 - 223	9.1e-65	Glycosyltransferase family 20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0031167)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001889.1_g000039 Rmu_sc0003748.1_g000024

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	16, 412
AccB1I	GGYRCC	1 cut(s)	501
AcsI	RAATTY	1 cut(s)	603
AfiI	CCNNNNNNNGG	3 cut(s)	31, 304, 421
AgsI	TTSAA	1 cut(s)	541
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	6 cut(s)	14, 260, 266, 274, 634, 656
AluI	AGCT	6 cut(s)	14, 260, 266, 274, 634, 656
Alw21I	GWGCWC	2 cut(s)	477, 636
Alw26I	GTCTC	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	3 cut(s)	21, 56, 353
ApaI	GGGCCC	1 cut(s)	25
ApeKI	GCWGC	4 cut(s)	11, 14, 274, 653
ApoI	RAATTY	1 cut(s)	603
ArsI	GACNNNNNNTTYG	2 cut(s)	549, 581
AspLEI	GCGC	1 cut(s)	642
AspS9I	GGNCC	3 cut(s)	21, 22, 354
AsuHPI	GGTGA	2 cut(s)	131, 500
BaeGI	GKGCMC	2 cut(s)	25, 250
BanI	GGYRCC	1 cut(s)	501
BanII	GRGCYC	2 cut(s)	25, 636
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	2 cut(s)	477, 636
BbvI	GCAGC	3 cut(s)	23, 261, 665
BccI	CCATC	3 cut(s)	201, 522, 628
BciVI	GTATCC	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	2 cut(s)	9, 275
BfuAI	ACCTGC	2 cut(s)	16, 412
BfuI	GTATCC	1 cut(s)	296
BisI	GCNGC	4 cut(s)	12, 15, 275, 654
BlsI	GCNGC	4 cut(s)	13, 16, 276, 655
BmgT120I	GGNCC	3 cut(s)	21, 22, 354
BmiI	GGNNCC	3 cut(s)	23, 356, 503
BpiI	GAAGAC	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 304, 421
Bse1I	ACTGG	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	212
BseLI	CCNNNNNNNGG	3 cut(s)	31, 304, 421
BseMII	CTCAG	3 cut(s)	76, 462, 657
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	320
BseSI	GKGCMC	2 cut(s)	25, 250
BseXI	GCAGC	3 cut(s)	23, 261, 665
BseYI	CCCAGC	1 cut(s)	149
BshFI	GGCC	3 cut(s)	23, 58, 355
BshNI	GGYRCC	1 cut(s)	501
BsiHKAI	GWGCWC	2 cut(s)	477, 636
BslI	CCNNNNNNNGG	3 cut(s)	31, 304, 421
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	23, 58, 355
Bsp120I	GGGCCC	1 cut(s)	21
Bsp1286I	GDGCHC	4 cut(s)	25, 250, 477, 636
Bsp143I	GATC	2 cut(s)	388, 626
BspANI	GGCC	3 cut(s)	23, 58, 355
BspCNI	CTCAG	3 cut(s)	75, 463, 656
BspLI	GGNNCC	3 cut(s)	23, 356, 503
BspMAI	CTGCAG	2 cut(s)	13, 279
BspMI	ACCTGC	2 cut(s)	16, 412
BspT107I	GGYRCC	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	2 cut(s)	388, 626
BssT1I	CCWWGG	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	477
BstDEI	CTNAG	3 cut(s)	62, 471, 643
BstEII	GGTNACC	1 cut(s)	93
BstENI	CCTNNNNNAGG	2 cut(s)	29, 302
BstF5I	GGATG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	642
BstKTI	GATC	2 cut(s)	391, 629
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	388, 626
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 43
BstPI	GGTNACC	1 cut(s)	93
BstSFI	CTRYAG	2 cut(s)	9, 275
BstSLI	GKGCMC	2 cut(s)	25, 250
BstV1I	GCAGC	3 cut(s)	23, 261, 665
BstV2I	GAAGAC	1 cut(s)	286
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	3 cut(s)	23, 58, 355
BtsCI	GGATG	1 cut(s)	212
BtsI	GCAGTG	2 cut(s)	162, 614
BtsIMutI	CAGTG	2 cut(s)	162, 614
BveI	ACCTGC	2 cut(s)	16, 412
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	642
Cfr13I	GGNCC	3 cut(s)	21, 22, 354
CviAII	CATG	3 cut(s)	38, 129, 506
DdeI	CTNAG	3 cut(s)	62, 471, 643
DpnI	GATC	2 cut(s)	390, 628
DpnII	GATC	2 cut(s)	388, 626
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Ecl136II	GAGCTC	1 cut(s)	634
Eco130I	CCWWGG	1 cut(s)	370
Eco147I	AGGCCT	1 cut(s)	58
Eco24I	GRGCYC	2 cut(s)	25, 636
Eco53kI	GAGCTC	1 cut(s)	634
Eco91I	GGTNACC	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	634
EcoNI	CCTNNNNNAGG	2 cut(s)	29, 302
EcoO109I	RGGNCCY	2 cut(s)	21, 22
EcoO65I	GGTNACC	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	2 cut(s)	25, 636
ErhI	CCWWGG	1 cut(s)	370
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	3 cut(s)	41, 132, 509
FaiI	YATR	9 cut(s)	39, 130, 433, 435, 480, 507, 521, 549, 609
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	3 cut(s)	37, 128, 505
Fnu4HI	GCNGC	4 cut(s)	12, 15, 275, 654
FokI	GGATG	1 cut(s)	219
FriOI	GRGCYC	2 cut(s)	25, 636
Fsp4HI	GCNGC	4 cut(s)	12, 15, 275, 654
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	641
GluI	GCNGC	4 cut(s)	12, 15, 275, 654
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	23, 58, 355
HhaI	GCGC	1 cut(s)	642
Hin1II	CATG	3 cut(s)	41, 132, 509
Hin6I	GCGC	1 cut(s)	640
HinP1I	GCGC	1 cut(s)	640
HinfI	GANTC	1 cut(s)	125
HphI	GGTGA	2 cut(s)	131, 500
Hpy188I	TCNGA	4 cut(s)	65, 408, 601, 631
Hpy188III	TCNNGA	1 cut(s)	624
HpyAV	CCTTC	3 cut(s)	433, 535, 603
HpyCH4V	TGCA	7 cut(s)	11, 17, 277, 339, 431, 458, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 43
HpyF3I	CTNAG	3 cut(s)	62, 471, 643
Hsp92II	CATG	3 cut(s)	41, 132, 509
HspAI	GCGC	1 cut(s)	640
Kzo9I	GATC	2 cut(s)	388, 626
LmnI	GCTCC	1 cut(s)	639
Lsp1109I	GCAGC	3 cut(s)	23, 261, 665
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	4 cut(s)	93, 160, 365, 466
MalI	GATC	2 cut(s)	390, 628
MboI	GATC	2 cut(s)	388, 626
MboII	GAAGA	6 cut(s)	134, 286, 398, 494, 518, 569
MhlI	GDGCHC	4 cut(s)	25, 250, 477, 636
MluCI	AATT	1 cut(s)	603
MnlI	CCTC	9 cut(s)	25, 63, 69, 110, 184, 237, 298, 478, 607
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	2 cut(s)	14, 656
MwoI	GCNNNNNNNGC	2 cut(s)	20, 43
NdeII	GATC	2 cut(s)	388, 626
NlaIII	CATG	3 cut(s)	41, 132, 509
NlaIV	GGNNCC	3 cut(s)	23, 356, 503
NmuCI	GTSAC	1 cut(s)	160
PceI	AGGCCT	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	4 cut(s)	13, 16, 276, 655
Psp124BI	GAGCTC	1 cut(s)	636
PspEI	GGTNACC	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	149
PspN4I	GGNNCC	3 cut(s)	23, 356, 503
PspOMI	GGGCCC	1 cut(s)	21
PspPI	GGNCC	3 cut(s)	21, 22, 354
PstI	CTGCAG	2 cut(s)	13, 279
PstNI	CAGNNNCTG	1 cut(s)	73
PvuII	CAGCTG	2 cut(s)	14, 656
SacI	GAGCTC	1 cut(s)	636
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	4 cut(s)	12, 15, 275, 654
Sau3AI	GATC	2 cut(s)	388, 626
Sau96I	GGNCC	3 cut(s)	21, 22, 354
SduI	GDGCHC	4 cut(s)	25, 250, 477, 636
SfcI	CTRYAG	2 cut(s)	9, 275
Sse9I	AATT	1 cut(s)	603
SseBI	AGGCCT	1 cut(s)	58
SspI	AATATT	2 cut(s)	323, 346
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	636
StuI	AGGCCT	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	370
TaqI	TCGA	1 cut(s)	391
TasI	AATT	1 cut(s)	603
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	169, 621
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	4 cut(s)	11, 14, 274, 653
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	6 cut(s)	54, 117, 305, 495, 575, 596
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	2 cut(s)	169, 621
XagI	CCTNNNNNAGG	2 cut(s)	29, 302
XapI	RAATTY	1 cut(s)	603
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.