Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003776.1

Orthogroup ID

OG0031283

Physical Location & Seq

Genomic Coordinates Reverse (-)

165376 .. 165900

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003776.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgggaattctgcagctgctgctacctttgtttttctgctccattgttcttgtacccagcaaagcagctgatcatgactgtccagtttcaaagtgtagtcctgatggtccccttatcaagtttccattccgtctaaagcatcaaccccttcactgtggcaatccagagtttgaggtttcctgcagcagcttcagcaatatgaccatgattcagctctcctcatcttcaggactcttcaccatccaaacaattgattatgaaaaccaatacttcgacgtctacaacagagatggctgccttcctagacggcttgtaaactttaccatctccagcagctcactctttcaaccagcacgtttatttgggaatgtaaggaatagaattcacatggtcaatttgattggggaaggaagatgttcagacccctcctcgcgttttccaagaaagtaccaagcaaaacgatgtgttgacccacaaacccaagtcaatagagcaatgacttacaaagtcacaatcaacaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

174

Amino Acids

19.73

Weight (kDa)

9.24

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031283)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003776.1_g000033
rosa_samantha	Rh7CG268000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	1 cut(s)	433
AcsI	RAATTY	2 cut(s)	6, 381
AcuI	CTGAAG	2 cut(s)	175, 210
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	2 cut(s)	54, 449
AgsI	TTSAA	2 cut(s)	90, 347
AluBI	AGCT	5 cut(s)	16, 68, 189, 214, 336
AluI	AGCT	5 cut(s)	16, 68, 189, 214, 336
AlwNI	CAGNNNCTG	1 cut(s)	19
ApeKI	GCWGC	8 cut(s)	13, 16, 19, 65, 183, 186, 294, 333
ApoI	RAATTY	2 cut(s)	6, 381
Asp700I	GAANNNNTTC	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	107
BbvI	GCAGC	8 cut(s)	3, 6, 25, 77, 195, 198, 281, 345
BccI	CCATC	4 cut(s)	98, 248, 284, 332
BceAI	ACGGC	1 cut(s)	323
BclI	TGATCA	1 cut(s)	70
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	2 cut(s)	11, 181
BisI	GCNGC	8 cut(s)	14, 17, 20, 66, 184, 187, 295, 334
BlsI	GCNGC	8 cut(s)	15, 18, 21, 67, 185, 188, 296, 335
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	109
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	313
BsaHI	GRCGYC	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	501
BseGI	GGATG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	2 cut(s)	208, 418
BseXI	GCAGC	8 cut(s)	3, 6, 25, 77, 195, 198, 281, 345
BseYI	CCCAGC	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	433
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	109
BspMAI	CTGCAG	2 cut(s)	15, 185
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	70
BssNI	GRCGYC	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	80, 155
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	433
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 192
BstSFI	CTRYAG	2 cut(s)	11, 181
BstUI	CGCG	1 cut(s)	433
BstV1I	GCAGC	8 cut(s)	3, 6, 25, 77, 195, 198, 281, 345
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	151
CaiI	CAGNNNCTG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	53, 448
CviAII	CATG	3 cut(s)	74, 205, 388
CviJI	RGCY	7 cut(s)	16, 68, 189, 214, 294, 310, 336
CviKI_1	RGCY	7 cut(s)	16, 68, 189, 214, 294, 310, 336
CviQI	GTAC	2 cut(s)	53, 448
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	107
Eco57I	CTGAAG	2 cut(s)	175, 210
EcoRI	GAATTC	2 cut(s)	6, 381
FaeI	CATG	3 cut(s)	77, 208, 391
FaiI	YATR	5 cut(s)	75, 200, 206, 258, 389
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	3 cut(s)	73, 204, 387
FbaI	TGATCA	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	8 cut(s)	14, 17, 20, 66, 184, 187, 295, 334
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	8 cut(s)	14, 17, 20, 66, 184, 187, 295, 334
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	8 cut(s)	14, 17, 20, 66, 184, 187, 295, 334
GsaI	CCCAGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	77, 208, 391
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	2 cut(s)	208, 231
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	3 cut(s)	280, 316, 469
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	4 cut(s)	74, 101, 164, 228
Hpy8I	GTNNAC	3 cut(s)	280, 316, 469
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	158, 308, 401
HpyCH4III	ACNGT	2 cut(s)	80, 155
HpyCH4IV	ACGT	2 cut(s)	276, 355
HpyCH4V	TGCA	2 cut(s)	13, 183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 192
HpySE526I	ACGT	2 cut(s)	276, 355
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	77, 208, 391
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	8 cut(s)	70, 96, 114, 177, 193, 213, 343, 363
Lsp1109I	GCAGC	8 cut(s)	3, 6, 25, 77, 195, 198, 281, 345
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	2 cut(s)	276, 355
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	3 cut(s)	216, 226, 423
MfeI	CAATTG	1 cut(s)	249
MluCI	AATT	4 cut(s)	6, 249, 381, 394
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	166, 229, 436, 439
MroXI	GAANNNNTTC	1 cut(s)	415
MspA1I	CMGCKG	2 cut(s)	16, 68
MunI	CAATTG	1 cut(s)	249
MvnI	CGCG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	19, 192
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	3 cut(s)	77, 208, 391
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	508
PagI	TCATGA	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	8 cut(s)	15, 18, 21, 67, 185, 188, 296, 335
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	2 cut(s)	15, 185
PstNI	CAGNNNCTG	1 cut(s)	19
PvuII	CAGCTG	2 cut(s)	16, 68
RsaI	GTAC	2 cut(s)	54, 449
RsaNI	GTAC	2 cut(s)	53, 448
SatI	GCNGC	8 cut(s)	14, 17, 20, 66, 184, 187, 295, 334
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	225
SetI	ASST	9 cut(s)	18, 28, 70, 177, 191, 216, 279, 338, 358
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	2 cut(s)	11, 181
SinI	GGWCC	1 cut(s)	107
Sse9I	AATT	4 cut(s)	6, 249, 381, 394
SspMI	CTAG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	80, 155
TaiI	ACGT	2 cut(s)	279, 358
TaqI	TCGA	1 cut(s)	273
TasI	AATT	4 cut(s)	6, 249, 381, 394
TfiI	GAWTC	1 cut(s)	208
TscAI	CASTG	1 cut(s)	158
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	8 cut(s)	13, 16, 19, 65, 183, 186, 294, 333
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	1 cut(s)	273
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	2 cut(s)	6, 381
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	1 cut(s)	303
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.