Rh7CG268000

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0031283
Physical Location & Seq
Reverse (-)
26317354 .. 26320015
2662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG268000.1

Sequence Viewer

Length: 618 bp
ATGGGAATTCTGCAGCTGCTGCTACCTTTGTTTTTCTGCTCCATTGTTCTTGTACCCAGCAAAGCAGCTGATCATGACTGTCCAGTTTCAAAGTGTAGTCCTGATGGTCCCCTTATCAAGTTTCCATTCCGTCTAAAGCATCAACCCCTTCACTGTGGCAATCCAGAGTTTGAGGTTTCCTGCAGCAGCTTCAGCAATACGACCATGATTCAGCTCTCCTCATCTTCAGGACTCTTCACCATCCAAACAATTGATTATGAAAACCAATACTTCGACGTCTACAACAGAGATGGCTGCCTTCCTAGACGGCTTGTAAACTTTACCATCTCCAGCAGCTCACTCTTTCAACCAGCACGTTTATTTGGGAATGACTACTGCATCTTTTCTGGGAAATATTTTCCCGACTTAAAATTACTGAATTGTTCCACACCAGAAAACTTTAGCACAGGGAATTTCAACAAGAAGTACATTCCCATCACATGTCTTAGTATACCAGGGCATCAGCTGAAGATTCGACAGACAGCCAAAGATAAATTTATAAAAGAAAACTCAAGAAAGAAAGCACCAATGAACCAGTTCAAGCAACCATACCCTCTGAAAATTATGGTAGAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

205

Amino Acids

23.27

Weight (kDa)

9.04

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 27 - 94 5.2e-15 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031283)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003776.1_g000033
rosa_samantha Rh7CG268000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 539
AatII GACGTC 1 cut(s) 279
AccI GTMKAC 2 cut(s) 279, 490
AcsI RAATTY 3 cut(s) 6, 451, 533
AcuI CTGAAG 3 cut(s) 175, 210, 527
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 2 cut(s) 54, 467
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 4 cut(s) 90, 347, 457, 580
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 6 cut(s) 16, 68, 189, 214, 336, 505
AluI AGCT 6 cut(s) 16, 68, 189, 214, 336, 505
AlwNI CAGNNNCTG 1 cut(s) 19
ApeKI GCWGC 8 cut(s) 13, 16, 19, 65, 183, 186, 294, 333
ApoI RAATTY 3 cut(s) 6, 451, 533
Asp700I GAANNNNTTC 1 cut(s) 575
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 229
AvaII GGWCC 1 cut(s) 107
BbvI GCAGC 8 cut(s) 3, 6, 25, 77, 195, 198, 281, 345
BccI CCATC 5 cut(s) 98, 248, 284, 332, 482
BceAI ACGGC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 495
BclI TGATCA 1 cut(s) 70
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 2 cut(s) 11, 181
BisI GCNGC 8 cut(s) 14, 17, 20, 66, 184, 187, 295, 334
BlsI GCNGC 8 cut(s) 15, 18, 21, 67, 185, 188, 296, 335
Bme1390I CCNGG 1 cut(s) 495
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 495
BmsI GCATC 3 cut(s) 148, 387, 508
BpmI CTGGAG 1 cut(s) 313
BpuEI CTTGAG 1 cut(s) 535
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 494
Bse1I ACTGG 2 cut(s) 83, 574
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 494
BseGI GGATG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 83, 574
BseRI GAGGAG 1 cut(s) 208
BseXI GCAGC 8 cut(s) 3, 6, 25, 77, 195, 198, 281, 345
BseYI CCCAGC 1 cut(s) 56
BslFI GGGAC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 70
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 109
BspMAI CTGCAG 2 cut(s) 15, 185
BsrI ACTGG 2 cut(s) 83, 574
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 1 cut(s) 70
BssNAI GTATAC 1 cut(s) 491
BssNI GRCGYC 1 cut(s) 276
Bst1107I GTATAC 1 cut(s) 491
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 2 cut(s) 80, 155
Bst6I CTCTTC 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 276
BstAPI GCANNNNNTGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 485
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 19, 192
BstNI CCWGG 1 cut(s) 495
BstNSI RCATGY 1 cut(s) 483
BstSCI CCNGG 1 cut(s) 493
BstSFI CTRYAG 2 cut(s) 11, 181
BstV1I GCAGC 8 cut(s) 3, 6, 25, 77, 195, 198, 281, 345
BstZ17I GTATAC 1 cut(s) 491
BtsCI GGATG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 151
CaiI CAGNNNCTG 1 cut(s) 19
CciI TCATGA 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 53, 466
CviAII CATG 3 cut(s) 74, 205, 480
CviJI RGCY 9 cut(s) 16, 68, 189, 214, 294, 310, 336, 505, 524
CviKI_1 RGCY 9 cut(s) 16, 68, 189, 214, 294, 310, 336, 505, 524
CviQI GTAC 2 cut(s) 53, 466
DdeI CTNAG 1 cut(s) 485
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 3 cut(s) 175, 210, 527
EcoRI GAATTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 493
FaeI CATG 3 cut(s) 77, 208, 483
FaiI YATR 9 cut(s) 75, 206, 258, 481, 491, 539, 589, 605, 616
FaqI GGGAC 1 cut(s) 93
FatI CATG 3 cut(s) 73, 204, 479
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 2 cut(s) 279, 490
Fnu4HI GCNGC 8 cut(s) 14, 17, 20, 66, 184, 187, 295, 334
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 8 cut(s) 14, 17, 20, 66, 184, 187, 295, 334
FspBI CTAG 1 cut(s) 303
GluI GCNGC 8 cut(s) 14, 17, 20, 66, 184, 187, 295, 334
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 3 cut(s) 77, 208, 483
HinfI GANTC 4 cut(s) 208, 231, 511, 611
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 3 cut(s) 280, 316, 491
Hpy188I TCNGA 1 cut(s) 597
Hpy188III TCNNGA 6 cut(s) 74, 101, 164, 228, 401, 552
Hpy8I GTNNAC 3 cut(s) 280, 316, 491
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 2 cut(s) 158, 308
HpyCH4III ACNGT 2 cut(s) 80, 155
HpyCH4IV ACGT 2 cut(s) 276, 355
HpyCH4V TGCA 3 cut(s) 13, 183, 378
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 192
HpyF3I CTNAG 1 cut(s) 485
HpySE526I ACGT 2 cut(s) 276, 355
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 3 cut(s) 77, 208, 483
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 8 cut(s) 3, 6, 25, 77, 195, 198, 281, 345
LweI GCATC 3 cut(s) 148, 387, 508
MaeI CTAG 1 cut(s) 303
MaeII ACGT 2 cut(s) 276, 355
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 3 cut(s) 216, 226, 520
MfeI CAATTG 1 cut(s) 249
MluCI AATT 7 cut(s) 6, 249, 410, 418, 451, 533, 600
MlyI GAGTC 1 cut(s) 225
MnlI CCTC 3 cut(s) 166, 229, 603
MroXI GAANNNNTTC 1 cut(s) 575
MseI TTAA 1 cut(s) 407
MspA1I CMGCKG 3 cut(s) 16, 68, 505
MspR9I CCNGG 1 cut(s) 495
MunI CAATTG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 495
MwoI GCNNNNNNNGC 2 cut(s) 19, 192
NdeII GATC 1 cut(s) 70
NlaIII CATG 3 cut(s) 77, 208, 483
NlaIV GGNNCC 1 cut(s) 109
NspI RCATGY 1 cut(s) 483
PagI TCATGA 1 cut(s) 73
PciI ACATGT 1 cut(s) 479
PdmI GAANNNNTTC 1 cut(s) 575
PfeI GAWTC 2 cut(s) 208, 511
PkrI GCNGC 8 cut(s) 15, 18, 21, 67, 185, 188, 296, 335
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PscI ACATGT 1 cut(s) 479
PsiI TTATAA 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 107
PstI CTGCAG 2 cut(s) 15, 185
PstNI CAGNNNCTG 1 cut(s) 19
PvuII CAGCTG 3 cut(s) 16, 68, 505
RsaI GTAC 2 cut(s) 54, 467
RsaNI GTAC 2 cut(s) 53, 466
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 8 cut(s) 14, 17, 20, 66, 184, 187, 295, 334
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 495
SfaNI GCATC 3 cut(s) 148, 387, 508
SfcI CTRYAG 2 cut(s) 11, 181
SinI GGWCC 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
Sse9I AATT 7 cut(s) 6, 249, 410, 418, 451, 533, 600
SspI AATATT 1 cut(s) 395
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 493
TaaI ACNGT 2 cut(s) 80, 155
TaiI ACGT 2 cut(s) 279, 358
TaqI TCGA 2 cut(s) 273, 514
TasI AATT 7 cut(s) 6, 249, 410, 418, 451, 533, 600
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 2 cut(s) 208, 511
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TscAI CASTG 1 cut(s) 158
TseI GCWGC 8 cut(s) 13, 16, 19, 65, 183, 186, 294, 333
TspDTI ATGAA 2 cut(s) 273, 584
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 3 cut(s) 6, 451, 533
XceI RCATGY 1 cut(s) 483
XmiI GTMKAC 2 cut(s) 279, 490
XmnI GAANNNNTTC 1 cut(s) 575
XspI CTAG 1 cut(s) 303
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.