Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003776.1

Orthogroup ID

OG0031283

Physical Location & Seq

Genomic Coordinates Reverse (-)

165376 .. 165900

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgggaattctgcagctgctgctacctttgtttttctgctccattgttcttgtacccagcaaagcagctgatcatgactgtccagtttcaaagtgtagtcctgatggtccccttatcaagtttccattccgtctaaagcatcaaccccttcactgtggcaatccagagtttgaggtttcctgcagcagcttcagcaatatgaccatgattcagctctcctcatcttcaggactcttcaccatccaaacaattgattatgaaaaccaatacttcgacgtctacaacagagatggctgccttcctagacggcttgtaaactttaccatctccagcagctcactctttcaaccagcacgtttatttgggaatgtaaggaatagaattcacatggtcaatttgattggggaaggaagatgttcagacccctcctcgcgttttccaagaaagtaccaagcaaaacgatgtgttgacccacaaacccaagtcaatagagcaatgacttacaaagtcacaatcaacaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

174

Amino Acids

19.73

Weight (kDa)

9.24

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	27 - 94	1.3e-14	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031283)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003776.1_g000033
rosa_samantha	Rh7CG268000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	1 cut(s)	433
AcsI	RAATTY	2 cut(s)	6, 381
AcuI	CTGAAG	2 cut(s)	175, 210
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	2 cut(s)	54, 449
AgsI	TTSAA	2 cut(s)	90, 347
AluBI	AGCT	5 cut(s)	16, 68, 189, 214, 336
AluI	AGCT	5 cut(s)	16, 68, 189, 214, 336
AlwNI	CAGNNNCTG	1 cut(s)	19
ApeKI	GCWGC	8 cut(s)	13, 16, 19, 65, 183, 186, 294, 333
ApoI	RAATTY	2 cut(s)	6, 381
Asp700I	GAANNNNTTC	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	107
BbvI	GCAGC	8 cut(s)	3, 6, 25, 77, 195, 198, 281, 345
BccI	CCATC	4 cut(s)	98, 248, 284, 332
BceAI	ACGGC	1 cut(s)	323
BclI	TGATCA	1 cut(s)	70
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	2 cut(s)	11, 181
BisI	GCNGC	8 cut(s)	14, 17, 20, 66, 184, 187, 295, 334
BlsI	GCNGC	8 cut(s)	15, 18, 21, 67, 185, 188, 296, 335
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	109
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	313
BsaHI	GRCGYC	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	501
BseGI	GGATG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	2 cut(s)	208, 418
BseXI	GCAGC	8 cut(s)	3, 6, 25, 77, 195, 198, 281, 345
BseYI	CCCAGC	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	433
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	109
BspMAI	CTGCAG	2 cut(s)	15, 185
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	70
BssNI	GRCGYC	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	80, 155
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	433
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 192
BstSFI	CTRYAG	2 cut(s)	11, 181
BstUI	CGCG	1 cut(s)	433
BstV1I	GCAGC	8 cut(s)	3, 6, 25, 77, 195, 198, 281, 345
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	151
CaiI	CAGNNNCTG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	53, 448
CviAII	CATG	3 cut(s)	74, 205, 388
CviJI	RGCY	7 cut(s)	16, 68, 189, 214, 294, 310, 336
CviKI_1	RGCY	7 cut(s)	16, 68, 189, 214, 294, 310, 336
CviQI	GTAC	2 cut(s)	53, 448
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	107
Eco57I	CTGAAG	2 cut(s)	175, 210
EcoRI	GAATTC	2 cut(s)	6, 381
FaeI	CATG	3 cut(s)	77, 208, 391
FaiI	YATR	5 cut(s)	75, 200, 206, 258, 389
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	3 cut(s)	73, 204, 387
FbaI	TGATCA	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	8 cut(s)	14, 17, 20, 66, 184, 187, 295, 334
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	8 cut(s)	14, 17, 20, 66, 184, 187, 295, 334
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	8 cut(s)	14, 17, 20, 66, 184, 187, 295, 334
GsaI	CCCAGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	77, 208, 391
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	2 cut(s)	208, 231
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	3 cut(s)	280, 316, 469
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	4 cut(s)	74, 101, 164, 228
Hpy8I	GTNNAC	3 cut(s)	280, 316, 469
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	158, 308, 401
HpyCH4III	ACNGT	2 cut(s)	80, 155
HpyCH4IV	ACGT	2 cut(s)	276, 355
HpyCH4V	TGCA	2 cut(s)	13, 183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 192
HpySE526I	ACGT	2 cut(s)	276, 355
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	77, 208, 391
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	8 cut(s)	70, 96, 114, 177, 193, 213, 343, 363
Lsp1109I	GCAGC	8 cut(s)	3, 6, 25, 77, 195, 198, 281, 345
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	2 cut(s)	276, 355
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	3 cut(s)	216, 226, 423
MfeI	CAATTG	1 cut(s)	249
MluCI	AATT	4 cut(s)	6, 249, 381, 394
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	166, 229, 436, 439
MroXI	GAANNNNTTC	1 cut(s)	415
MspA1I	CMGCKG	2 cut(s)	16, 68
MunI	CAATTG	1 cut(s)	249
MvnI	CGCG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	19, 192
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	3 cut(s)	77, 208, 391
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	508
PagI	TCATGA	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	8 cut(s)	15, 18, 21, 67, 185, 188, 296, 335
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	2 cut(s)	15, 185
PstNI	CAGNNNCTG	1 cut(s)	19
PvuII	CAGCTG	2 cut(s)	16, 68
RsaI	GTAC	2 cut(s)	54, 449
RsaNI	GTAC	2 cut(s)	53, 448
SatI	GCNGC	8 cut(s)	14, 17, 20, 66, 184, 187, 295, 334
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	225
SetI	ASST	9 cut(s)	18, 28, 70, 177, 191, 216, 279, 338, 358
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	2 cut(s)	11, 181
SinI	GGWCC	1 cut(s)	107
Sse9I	AATT	4 cut(s)	6, 249, 381, 394
SspMI	CTAG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	80, 155
TaiI	ACGT	2 cut(s)	279, 358
TaqI	TCGA	1 cut(s)	273
TasI	AATT	4 cut(s)	6, 249, 381, 394
TfiI	GAWTC	1 cut(s)	208
TscAI	CASTG	1 cut(s)	158
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	8 cut(s)	13, 16, 19, 65, 183, 186, 294, 333
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	1 cut(s)	273
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	2 cut(s)	6, 381
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	1 cut(s)	303
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.