Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003801.1

Orthogroup ID

OG0022699

Physical Location & Seq

Genomic Coordinates Forward (+)

18046 .. 21198

Gene Structure 3153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003801.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atggttctatttgacatccctgatattcgccttttctgttcaactgatgagaggtttacctctcaggtggttcctgtacccattaaatcattttttgaaggggctgctgggagtcaaattcaagccatattcaaagtcggcgaggtgaagagaccggctatttggcagcttgatggttcttcacgagcttgggagacttctgagctttggagaggtttcttccgtttgcttgcgtccctctgtctgtcgtcgtcctcgatggtgtacttggctcaagggcgattgacgcttgatcttgagttgtatgatggccacgaggaagcaaccattgcagaaccatatcgcaccacctccaccaatcggaacacacagggctcaaggacgcctatgagaaaagtaaccgtagagggcttgattgccaaggcactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

FDX-ACB tRNA-synt_2d

Protein Analysis

143

Amino Acids

16.02

Weight (kDa)

6.59

Isoelectric Point (pI)

28.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022699)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496531
rosa_multiflora	Rmu_sc0003801.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083980
rosa_wichuraiana	Rw7G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	383
AfaI	GTAC	2 cut(s)	78, 266
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	4 cut(s)	42, 98, 122, 133
AluBI	AGCT	3 cut(s)	169, 188, 205
AluI	AGCT	3 cut(s)	169, 188, 205
Alw26I	GTCTC	2 cut(s)	145, 188
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	2 cut(s)	104, 166
ApoI	RAATTY	1 cut(s)	117
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
AsuHPI	GGTGA	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	377
BauI	CACGAG	2 cut(s)	183, 314
BbvI	GCAGC	2 cut(s)	91, 178
BccI	CCATC	3 cut(s)	167, 253, 302
BcoDI	GTCTC	2 cut(s)	145, 188
BisI	GCNGC	2 cut(s)	105, 167
BlsI	GCNGC	2 cut(s)	106, 168
BmiI	GGNNCC	1 cut(s)	72
BpuEI	CTTGAG	3 cut(s)	258, 317, 361
BsaHI	GRCGYC	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse118I	RCCGGY	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	420
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	77, 192
BseXI	GCAGC	2 cut(s)	91, 178
BseYI	CCCAGC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmAI	GTCTC	2 cut(s)	145, 188
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	312
Bso31I	GGTCTC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	2 cut(s)	76, 193
BspLI	GGNNCC	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	420
BssMI	GATC	1 cut(s)	292
BssNI	GRCGYC	1 cut(s)	383
BssSI	CACGAG	2 cut(s)	183, 314
BssT1I	CCWWGG	1 cut(s)	420
Bst2BI	CACGAG	2 cut(s)	183, 314
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	383
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	63, 201
BstF5I	GGATG	1 cut(s)	15
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	2 cut(s)	145, 188
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 329
BstV1I	GCAGC	2 cut(s)	91, 178
BsuRI	GGCC	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	154
CseI	GACGC	3 cut(s)	222, 295, 391
Csp6I	GTAC	2 cut(s)	77, 265
CviQI	GTAC	2 cut(s)	77, 265
DdeI	CTNAG	2 cut(s)	63, 201
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	377
Eco31I	GGTCTC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	420
EcoT38I	GRGCYC	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	420
FaiI	YATR	4 cut(s)	128, 306, 340, 389
FaqI	GGGAC	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	105, 167
FokI	GGATG	1 cut(s)	2
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	2 cut(s)	105, 167
GluI	GCNGC	2 cut(s)	105, 167
GsaI	CCCAGC	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	3 cut(s)	222, 295, 391
Hin1I	GRCGYC	1 cut(s)	383
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	57, 265
Hpy188I	TCNGA	3 cut(s)	202, 363, 431
Hpy188III	TCNNGA	2 cut(s)	183, 296
Hpy8I	GTNNAC	2 cut(s)	57, 265
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 329
HpyF3I	CTNAG	2 cut(s)	63, 201
Hsp92I	GRCGYC	1 cut(s)	383
Kzo9I	GATC	1 cut(s)	292
LpnPI	CCDG	6 cut(s)	33, 50, 87, 93, 168, 356
Lsp1109I	GCAGC	2 cut(s)	91, 178
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	3 cut(s)	160, 171, 211
MhlI	GDGCHC	1 cut(s)	377
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	1 cut(s)	117
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	9 cut(s)	45, 70, 136, 206, 248, 265, 310, 361, 400
Mox20I	TGGCCA	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	1 cut(s)	84
Msp20I	TGGCCA	1 cut(s)	312
MspI	CCGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	286, 329
NdeII	GATC	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	106, 168
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	72
RsaI	GTAC	2 cut(s)	78, 266
RsaNI	GTAC	2 cut(s)	77, 265
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	105, 167
Sau3AI	GATC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	377
SetI	ASST	9 cut(s)	56, 62, 69, 147, 171, 190, 207, 217, 353
SmlI	CTYRAG	3 cut(s)	273, 296, 376
SmoI	CTYRAG	3 cut(s)	273, 296, 376
Sse9I	AATT	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	403
TaqI	TCGA	1 cut(s)	257
TasI	AATT	1 cut(s)	117
TatI	WGTACW	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseI	GCWGC	2 cut(s)	104, 166
TspGWI	ACGGA	1 cut(s)	212
XapI	RAATTY	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.