Rmu_sc0003834.1_g000003

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003834.1
OG0018001
Physical Location & Seq
Reverse (-)
7352 .. 9225
1874 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1224 bp
atggccgacataggtgatgatggtgttcaacttcaagggaaggagctatataagcaccagtttaagcagactttcaccacacgcttgacagagattctggcttttgatcccaactctgtggtttcagagaggggggtgatagagattctggagaagttaaaccgagcggcaatcatgtatggcaggagctacattgccgaagatgagtccgagtatgttgattgctctaatgtgattgggtttggtttgcccctgattggccaggagaggggcttcatgcagttgctcagagagtgtgatccacaatcggaagtgggtaggaaattgtggaacatgaaacaccaagcggctcttgttggtgaaaaagtctcgcagcatcttataaggatgatggtggtgatgaacacagagaacaaaaaggaaatgatgaagaagttcagagatactgtgcatctgtttccattcttagtggatgcttttgaatggccggggagaagtgaatattttggagtagtgtataacaggatcaacgttcttatggaacacgcacgcaaagaattcctcctgcaggttaagagatcaagaatgccagctgggagtctgggatatgttgaagaccttctcataaatttagacaacaaaaacgagcgtgatgaatttcttgatgacctccttgatcagattgtagaagttatatcaatgctggagtctctgctgagctttccactactgcccgatgggccaaggttgctctctagaaatataagatcagtagcttggctgcgtaaggagcttgtggatatggaaataaagatgcacaacaatattggaaaaagggatttggaaagtgtggtgaaagcggtgaagctgggaccccaatctcgagggcgagtcagactccatgttggaggaactatcattcataagtaccggaatagcgcactgattcggatagtaggaatcaacaccaggaaggaagctgagtcgttcactggaaagcacattgtctacttctacagggctaacgtgaagaaaaacaacagccactaccgctgcatttggggaaaggttactaggcctcatgataacagtggcattctttgtgctagttgcacaggccgccttttgtctatggagactaatcttgcagttccccaggaccttcgtctaatctcgtgcctggttttgttgggttccatcttggtcacttcccgactattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000184 GO:0000956 GO:0002181 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0019538 GO:0019843 GO:0022414 GO:0022613 GO:0022625 GO:0022626 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0042254 GO:0042273 GO:0042886 GO:0043021 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 ko01130 ko03010 map00230 map01100 map01110 map01130 map03010
Pfam Domains
Protein Families
Ribosomal_L35Ae

Protein Analysis

407

Amino Acids

46.63

Weight (kDa)

9.07

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L35Ae PF01247 309 - 370 5.1e-16 Ribosomal protein L35Ae
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018001)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11060
rosa_chinensis RchiOBHm_Chr5g0017881
rosa_laevigata RLG00000032319
rosa_multiflora Rmu_sc0003834.1_g000003
rosa_roxburghii Rroxscaffold_1G00059680
rosa_rugosa Rorug05G0039000
rosa_samantha Rh5AG131900 Rh5BG129700 Rh5CG142400 Rh5DG131900
rosa_wichuraiana Rw5G011480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
Acc36I ACCTGC 1 cut(s) 559
AccBSI CCGCTC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 1008
AciI CCGC 5 cut(s) 167, 347, 860, 1051, 1120
AclI AACGTT 1 cut(s) 531
AclWI GGATC 3 cut(s) 101, 293, 533
AcoI YGGCCR 3 cut(s) 3, 259, 485
AcsI RAATTY 3 cut(s) 557, 628, 656
AfaI GTAC 1 cut(s) 929
AfiI CCNNNNNNNGG 3 cut(s) 257, 268, 568
AgsI TTSAA 4 cut(s) 29, 35, 482, 614
AjnI CCWGG 4 cut(s) 261, 968, 1155, 1179
AluBI AGCT 8 cut(s) 46, 189, 593, 720, 776, 793, 868, 980
AluI AGCT 8 cut(s) 46, 189, 593, 720, 776, 793, 868, 980
Alw26I GTCTC 3 cut(s) 373, 714, 1130
AlwI GGATC 3 cut(s) 101, 293, 533
Ama87I CYCGRG 1 cut(s) 882
AoxI GGCC 6 cut(s) 3, 259, 485, 740, 1076, 1117
ApeKI GCWGC 3 cut(s) 373, 781, 1053
ApoI RAATTY 3 cut(s) 557, 628, 656
Asp700I GAANNNNTTC 2 cut(s) 434, 618
AspLEI GCGC 1 cut(s) 941
AspS9I GGNCC 3 cut(s) 740, 872, 1159
AsuC2I CCSGG 1 cut(s) 489
AsuHPI GGTGA 7 cut(s) 26, 67, 148, 371, 409, 865, 874
AvaI CYCGRG 1 cut(s) 882
AvaII GGWCC 2 cut(s) 872, 1159
BalI TGGCCA 1 cut(s) 261
BauI CACGAG 1 cut(s) 1174
BbsI GAAGAC 1 cut(s) 621
BbvI GCAGC 3 cut(s) 385, 768, 1040
BccI CCATC 4 cut(s) 14, 385, 731, 1205
BciT130I CCWGG 4 cut(s) 263, 970, 1157, 1181
BclI TGATCA 1 cut(s) 676
BcnI CCSGG 1 cut(s) 489
BcoDI GTCTC 3 cut(s) 373, 714, 1130
BfaI CTAG 3 cut(s) 756, 1074, 1107
BfmI CTRYAG 2 cut(s) 566, 1015
BfuAI ACCTGC 1 cut(s) 559
BglI GCCNNNNNGGC 1 cut(s) 739
BisI GCNGC 6 cut(s) 168, 348, 374, 782, 1054, 1120
BlpI GCTNAGC 1 cut(s) 716
BlsI GCNGC 6 cut(s) 169, 349, 375, 783, 1055, 1121
Bme1390I CCNGG 5 cut(s) 263, 489, 970, 1157, 1181
Bme18I GGWCC 2 cut(s) 872, 1159
BmeT110I CYCGRG 1 cut(s) 882
BmgT120I GGNCC 3 cut(s) 740, 872, 1159
BmiI GGNNCC 3 cut(s) 873, 874, 1195
BmrFI CCNGG 5 cut(s) 263, 489, 970, 1157, 1181
BmsI GCATC 4 cut(s) 385, 460, 463, 804
BoxI GACNNNNGTC 1 cut(s) 1164
BpiI GAAGAC 1 cut(s) 621
BplI GAGNNNNNCTC 2 cut(s) 882, 914
BpmI CTGGAG 2 cut(s) 170, 725
Bpu1102I GCTNAGC 1 cut(s) 716
BpuMI CCSGG 1 cut(s) 489
BsaJI CCNNGG 3 cut(s) 488, 743, 1155
BsaWI WCCGGW 1 cut(s) 930
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 268, 568
Bse1I ACTGG 2 cut(s) 58, 997
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 4 cut(s) 263, 970, 1157, 1181
BseDI CCNNGG 3 cut(s) 488, 743, 1155
BseGI GGATG 2 cut(s) 393, 478
BseLI CCNNNNNNNGG 3 cut(s) 257, 268, 568
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 3 cut(s) 301, 707, 972
BseNI ACTGG 2 cut(s) 58, 997
BseXI GCAGC 3 cut(s) 385, 768, 1040
BseYI CCCAGC 2 cut(s) 593, 868
BshFI GGCC 6 cut(s) 5, 261, 487, 742, 1078, 1119
BsiHKCI CYCGRG 1 cut(s) 882
BsiSI CCGG 2 cut(s) 488, 931
BslFI GGGAC 1 cut(s) 885
BslI CCNNNNNNNGG 3 cut(s) 257, 268, 568
BsmAI GTCTC 3 cut(s) 373, 714, 1130
BsmFI GGGAC 1 cut(s) 885
BsmI GAATGC 2 cut(s) 591, 1095
BsnI GGCC 6 cut(s) 5, 261, 487, 742, 1078, 1119
BsoBI CYCGRG 1 cut(s) 882
Bsp143I GATC 6 cut(s) 106, 298, 525, 578, 676, 767
Bsp1720I GCTNAGC 1 cut(s) 716
BspACI CCGC 5 cut(s) 167, 347, 860, 1051, 1120
BspANI GGCC 6 cut(s) 5, 261, 487, 742, 1078, 1119
BspCNI CTCAG 3 cut(s) 300, 708, 973
BspHI TCATGA 1 cut(s) 1081
BspLI GGNNCC 3 cut(s) 873, 874, 1195
BspMAI CTGCAG 1 cut(s) 570
BspMI ACCTGC 1 cut(s) 559
BspPI GGATC 3 cut(s) 101, 293, 533
BsrBI CCGCTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 2 cut(s) 58, 997
BssECI CCNNGG 3 cut(s) 488, 743, 1155
BssMI GATC 6 cut(s) 106, 298, 525, 578, 676, 767
BssSI CACGAG 1 cut(s) 1174
BssT1I CCWWGG 1 cut(s) 743
Bst2BI CACGAG 1 cut(s) 1174
Bst2UI CCWGG 4 cut(s) 263, 970, 1157, 1181
Bst4CI ACNGT 2 cut(s) 448, 1091
BstC8I GCNNGC 2 cut(s) 550, 591
BstDEI CTNAG 4 cut(s) 287, 466, 716, 981
BstENI CCTNNNNNAGG 1 cut(s) 566
BstF5I GGATG 2 cut(s) 393, 478
BstHHI GCGC 1 cut(s) 941
BstKTI GATC 6 cut(s) 109, 301, 528, 581, 679, 770
BstMAI GTCTC 3 cut(s) 373, 714, 1130
BstMBI GATC 6 cut(s) 106, 298, 525, 578, 676, 767
BstMWI GCNNNNNNNGC 6 cut(s) 52, 739, 748, 790, 1050, 1119
BstNI CCWGG 4 cut(s) 263, 970, 1157, 1181
BstPAI GACNNNNGTC 1 cut(s) 1164
BstSCI CCNGG 5 cut(s) 261, 487, 968, 1155, 1179
BstSFI CTRYAG 2 cut(s) 566, 1015
BstV1I GCAGC 3 cut(s) 385, 768, 1040
BstV2I GAAGAC 1 cut(s) 621
BstXI CCANNNNNNTGG 1 cut(s) 118
BsuRI GGCC 6 cut(s) 5, 261, 487, 742, 1078, 1119
BtsCI GGATG 2 cut(s) 393, 478
BtsIMutI CAGTG 3 cut(s) 941, 990, 1096
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 2 cut(s) 550, 591
CciI TCATGA 1 cut(s) 1081
CfoI GCGC 1 cut(s) 941
Cfr13I GGNCC 3 cut(s) 740, 872, 1159
Csp6I GTAC 1 cut(s) 928
CviAII CATG 5 cut(s) 175, 277, 334, 902, 1082
CviQI GTAC 1 cut(s) 928
DdeI CTNAG 4 cut(s) 287, 466, 716, 981
DpnI GATC 6 cut(s) 108, 300, 527, 580, 678, 769
DpnII GATC 6 cut(s) 106, 298, 525, 578, 676, 767
EaeI YGGCCR 3 cut(s) 3, 259, 485
Eco130I CCWWGG 1 cut(s) 743
Eco147I AGGCCT 1 cut(s) 1078
Eco47I GGWCC 2 cut(s) 872, 1159
Eco88I CYCGRG 1 cut(s) 882
EcoNI CCTNNNNNAGG 1 cut(s) 566
EcoO109I RGGNCCY 2 cut(s) 872, 1159
EcoRI GAATTC 1 cut(s) 557
EcoRII CCWGG 4 cut(s) 261, 968, 1155, 1179
EcoT14I CCWWGG 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 743
FaeI CATG 5 cut(s) 178, 280, 337, 905, 1085
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 1 cut(s) 885
FatI CATG 5 cut(s) 174, 276, 333, 901, 1081
FbaI TGATCA 1 cut(s) 676
FblI GTMKAC 1 cut(s) 1008
Fnu4HI GCNGC 6 cut(s) 168, 348, 374, 782, 1054, 1120
FokI GGATG 2 cut(s) 400, 485
Fsp4HI GCNGC 6 cut(s) 168, 348, 374, 782, 1054, 1120
FspBI CTAG 3 cut(s) 756, 1074, 1107
GlaI GCGC 1 cut(s) 940
GluI GCNGC 6 cut(s) 168, 348, 374, 782, 1054, 1120
GsaI CCCAGC 2 cut(s) 597, 872
GsuI CTGGAG 2 cut(s) 170, 725
HaeIII GGCC 6 cut(s) 5, 261, 487, 742, 1078, 1119
HapII CCGG 2 cut(s) 488, 931
HhaI GCGC 1 cut(s) 941
Hin1II CATG 5 cut(s) 178, 280, 337, 905, 1085
Hin6I GCGC 1 cut(s) 939
HinP1I GCGC 1 cut(s) 939
HpaII CCGG 2 cut(s) 488, 931
HphI GGTGA 7 cut(s) 26, 67, 148, 371, 409, 865, 874
Hpy166II GTNNAC 2 cut(s) 990, 1009
Hpy188I TCNGA 8 cut(s) 127, 211, 290, 310, 440, 681, 896, 951
Hpy188III TCNNGA 7 cut(s) 149, 582, 662, 756, 882, 1082, 1212
Hpy8I GTNNAC 2 cut(s) 990, 1009
HpyAV CCTTC 4 cut(s) 34, 629, 967, 1172
HpyCH4III ACNGT 2 cut(s) 448, 1091
HpyCH4IV ACGT 2 cut(s) 531, 1026
HpyCH4V TGCA 7 cut(s) 280, 451, 568, 817, 1056, 1113, 1148
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 739, 748, 790, 1050, 1119
HpyF3I CTNAG 4 cut(s) 287, 466, 716, 981
HpySE526I ACGT 2 cut(s) 531, 1026
Hsp92II CATG 5 cut(s) 178, 280, 337, 905, 1085
HspAI GCGC 1 cut(s) 939
KflI GGGWCCC 1 cut(s) 872
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 6 cut(s) 106, 298, 525, 578, 676, 767
LmnI GCTCC 3 cut(s) 43, 186, 790
Lsp1109I GCAGC 3 cut(s) 385, 768, 1040
LweI GCATC 4 cut(s) 385, 460, 463, 804
MaeI CTAG 3 cut(s) 756, 1074, 1107
MaeII ACGT 2 cut(s) 531, 1026
MaeIII GTNAC 2 cut(s) 1069, 1204
MalI GATC 6 cut(s) 108, 300, 527, 580, 678, 769
MbiI CCGCTC 1 cut(s) 167
MboI GATC 6 cut(s) 106, 298, 525, 578, 676, 767
MboII GAAGA 4 cut(s) 212, 442, 626, 1042
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 4 cut(s) 323, 557, 628, 656
MluNI TGGCCA 1 cut(s) 261
MlyI GAGTC 6 cut(s) 215, 607, 716, 891, 900, 992
MmeI TCCRAC 1 cut(s) 886
MnlI CCTC 7 cut(s) 123, 261, 572, 680, 878, 902, 1089
Mox20I TGGCCA 1 cut(s) 261
MroXI GAANNNNTTC 2 cut(s) 434, 618
MscI TGGCCA 1 cut(s) 261
MseI TTAA 3 cut(s) 63, 158, 573
Msp20I TGGCCA 1 cut(s) 261
MspA1I CMGCKG 2 cut(s) 593, 1053
MspI CCGG 2 cut(s) 488, 931
MspR9I CCNGG 5 cut(s) 263, 489, 970, 1157, 1181
Mva1269I GAATGC 2 cut(s) 591, 1095
MvaI CCWGG 4 cut(s) 263, 970, 1157, 1181
MwoI GCNNNNNNNGC 6 cut(s) 52, 739, 748, 790, 1050, 1119
NciI CCSGG 1 cut(s) 489
NdeII GATC 6 cut(s) 106, 298, 525, 578, 676, 767
NlaIII CATG 5 cut(s) 178, 280, 337, 905, 1085
NlaIV GGNNCC 3 cut(s) 873, 874, 1195
NmuCI GTSAC 1 cut(s) 1204
PaeR7I CTCGAG 1 cut(s) 882
PagI TCATGA 1 cut(s) 1081
PceI AGGCCT 1 cut(s) 1078
PctI GAATGC 2 cut(s) 591, 1095
PdmI GAANNNNTTC 2 cut(s) 434, 618
PfeI GAWTC 4 cut(s) 94, 145, 946, 960
PkrI GCNGC 6 cut(s) 169, 349, 375, 783, 1055, 1121
PleI GAGTC 6 cut(s) 214, 606, 715, 891, 899, 991
PpsI GAGTC 6 cut(s) 214, 606, 715, 891, 899, 991
PpuMI RGGWCCY 2 cut(s) 872, 1159
PshAI GACNNNNGTC 1 cut(s) 1164
PsiI TTATAA 1 cut(s) 383
Psp1406I AACGTT 1 cut(s) 531
Psp5II RGGWCCY 2 cut(s) 872, 1159
Psp6I CCWGG 4 cut(s) 261, 968, 1155, 1179
PspFI CCCAGC 2 cut(s) 593, 868
PspGI CCWGG 4 cut(s) 261, 968, 1155, 1179
PspN4I GGNNCC 3 cut(s) 873, 874, 1195
PspPI GGNCC 3 cut(s) 740, 872, 1159
PspPPI RGGWCCY 2 cut(s) 872, 1159
PstI CTGCAG 1 cut(s) 570
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 1 cut(s) 929
RsaNI GTAC 1 cut(s) 928
SaqAI TTAA 3 cut(s) 63, 158, 573
SatI GCNGC 6 cut(s) 168, 348, 374, 782, 1054, 1120
Sau3AI GATC 6 cut(s) 106, 298, 525, 578, 676, 767
Sau96I GGNCC 3 cut(s) 740, 872, 1159
SbfI CCTGCAGG 1 cut(s) 570
SchI GAGTC 6 cut(s) 215, 607, 716, 891, 900, 992
ScrFI CCNGG 5 cut(s) 263, 489, 970, 1157, 1181
SdaI CCTGCAGG 1 cut(s) 570
SfaNI GCATC 4 cut(s) 385, 460, 463, 804
SfcI CTRYAG 2 cut(s) 566, 1015
Sfr274I CTCGAG 1 cut(s) 882
SinI GGWCC 2 cut(s) 872, 1159
SlaI CTCGAG 1 cut(s) 882
SmlI CTYRAG 1 cut(s) 882
SmoI CTYRAG 1 cut(s) 882
Sse8387I CCTGCAGG 1 cut(s) 570
Sse9I AATT 4 cut(s) 323, 557, 628, 656
SseBI AGGCCT 1 cut(s) 1078
SsiI CCGC 5 cut(s) 167, 347, 860, 1051, 1120
SspI AATATT 2 cut(s) 503, 826
SspMI CTAG 3 cut(s) 756, 1074, 1107
StuI AGGCCT 1 cut(s) 1078
StyD4I CCNGG 5 cut(s) 261, 487, 968, 1155, 1179
StyI CCWWGG 1 cut(s) 743
TaaI ACNGT 2 cut(s) 448, 1091
TaiI ACGT 2 cut(s) 534, 1029
TaqI TCGA 1 cut(s) 883
TasI AATT 4 cut(s) 323, 557, 628, 656
TauI GCSGC 3 cut(s) 170, 350, 1122
TfiI GAWTC 4 cut(s) 94, 145, 946, 960
Tru1I TTAA 3 cut(s) 63, 158, 573
Tru9I TTAA 3 cut(s) 63, 158, 573
TscAI CASTG 3 cut(s) 948, 997, 1096
TseFI GTSAC 1 cut(s) 1204
TseI GCWGC 3 cut(s) 373, 781, 1053
Tsp45I GTSAC 1 cut(s) 1204
TspDTI ATGAA 6 cut(s) 265, 350, 416, 443, 669, 911
TspRI CASTG 3 cut(s) 948, 997, 1096
VpaK11BI GGWCC 2 cut(s) 872, 1159
XagI CCTNNNNNAGG 1 cut(s) 566
XapI RAATTY 3 cut(s) 557, 628, 656
XbaI TCTAGA 1 cut(s) 755
XhoI CTCGAG 1 cut(s) 882
XmiI GTMKAC 1 cut(s) 1008
XmnI GAANNNNTTC 2 cut(s) 434, 618
XspI CTAG 3 cut(s) 756, 1074, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.