Rorug05G0039000

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000551
Physical Location & Seq
Reverse (-)
3155486 .. 3159820
4335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0039000.1

Sequence Viewer

Length: 2532 bp
ATGCCAATAGGTATTGGAACCAATAGTGTTAGTGTTTTAAATTCCTCCATGTTCTTCCTATTCATCTTCAGCTTGCTTCCCTCACAACATTGGTCTGAAGTTTATGATCTAACTCCTTCACAATCATTAGCACAGGAACAAACTCTAGTCTCTCCTGGTCAAATTTTTGAATTGGGATTTTTTAGTCCTAATAATTCTGCTAATAAGTATGTGGGGTTGTGGCACAAAAGTATATTTCCTCGTAAAATTGTGTGGGTGGCGAACAGAGAAAATCCCCTTGCAGTTACAGACAGCTTGGCTACTTTGAGGATTGGCAGCAATGGAAATCTGGAGCTTGTAGATGGGAAGCAGAGTTCTGTCTGGTCAACCAATGTTTCGATGTCAACTAATGGTTCAGCTGCAGTTCTTTTAGACAATGGAACCTTTGTTCTCAAAGATGATATGGGAGCTGATTTGTGGCAGAGTTTTGATTATCCTAGTGACTCACTTCTGCCAAGCATGTTGCTGGGATTTGATAGTAATACTCGAAAATGGAATTTGTTGACATCATGGAAAGGTGAAAATGATCCATCAACTGGGATATTCTCGGTTGGATTGTCAGCACAGATGCCAACACAAGTGTTCATTTGGAAAAATGGATCCACTCCCCGCTGGAGAAGTGGTCCATGGGATAAATCAAAGTTCATTGGTGTACCTAATATGGATTCTCAATATCTAAGTGGATTCACTCTAGATGATAATGTGAAACAGGGAACAAGGTACTTCTCCTACAGTTTATTTGACAAAACTCTTGCATATTTGGACATATCTTCTGATGGAATCTTAACGGTTATGCTTTCCGAAAATGGCGAGAAATGGAGTATTAACTATGCTGCACCGACTAATACATGTGAAAGTTATGGAGCATGTGGACCTTTTGGGTTTTGCAAAGCTTCTGACCCTTCAGTCTGCAAGTGTTTGAAAGGGTTTATACCCAAGTCAGGCAAGGAATGGAGCAAACGAAACTGGACAAGAGGTTGTGTGAGGGAAACCCCATTGTCTTGTGGGAGACGCACAAATACATCAGTCTCGTCAATGGGGAAGAAAGATGGGTTTTGGAAGATGGAGAACTCCAAAATACCTGATTTTCATGAATATCTAACATCTTTATCTGACGATGTGAATGAGGACTGTAAGACACAGTGCTTGAGTAATTGTTCTTGTCTGGCTTATACGTATGTCATCAATATAGGGTGTTTGGTATGGTCCAAAGACCTCATTGATATACAGGAGTTTAGCTCTGGCGGTGAAGATCTTTTTATTCGGCTAGCACATACAGATTCAGGTTATGGAAAGCGGACAAAACTAATTGTCAGCCTCACAGCTATTTTTGTCATTAGTATTCTGGGTTTCATAGTGTTCGGTTTGCACAGGTTCTCAGCTAGAAAGAAGGGAAACATAATAGTAACAACTAAGCGCTTTGAGTCAATTGATACGACTGAGACTTCAAGAGACACTCTTCTAGAATGTATAAGAGAGCACGATCGGGCAGAGCAATTCATGTATAATTATGATAGCATCTTAATTGCAACAAACAATTTCAGCTCCACAAACAAACTCGGCGAAGGAGGATTTGGCCCTGTTTATAAGGGTAAGCTAGAAGAAGGGAAGGAAATAGCAGTAAAAAGACTATCTCGTAGCTCAGGACAAGGAGTAGAAGAGTTCAAGAATGAGATGTTGTTGATCTCCAAACTTCAACATAAAAATCTTGTTAAGATCATGGGTTGCTGTGTCACAGAAGATGAAAAGTTACTGATTTATGAATTCATGGAAAACAAAAGCTTGGATACCCTTCTGTTTGATCTGTCAAGAAGAGCGGAGCTCAATTGGGCCAGACGCTTCAATATTATTCAGGGTGTTGCTAGAGGACTTCTTTATCTTCATCATGATTCTTGTTTGAAGGTAATACATAGAGATTTGAAGGTCAGCAATATTCTCTTGGATGAAAAAATGAATCCAAAAATTTCAGATTTTGGATTGGCACGAATTGTTCAAGGGACACAGGATCTAGAAAATACTCAGAAGGTTGTGGGAACACGTGGCTACATGTCTCCGGAATATGCCATGGGAGGGATATTTTCTGAAAAATCTGATGTCTATAGTTTCGGAGTCTTGGTATTGGAGATTATTAGTGGTAGGAAGAATAACAGCTTCTATTACAATGACCGACTGCCAAGCCTCCTAGCTTATGTATGGCACTTGTGGAGTGAAGGCAGGGGATTAAAGTTAGTAGATGAAGTATTGGCTGATTTATATTCGTCAACAGAAGTAATGAGATGTCTGCAGATTGGGCTTCTTTGTGTACAAGACAATGCTGTGGATAGGCCAAGCATGTCGGAAGTAGTTCTCATGCTAAGTAGTAACACAGACAGTCCACAACCTATGAAGCCTATATTCACTTTCCACAACGCAGTCTCTCCTTCTCAACCACAGTATGTGAAAAGTACTTGTTCAGGAAATGAAGCTACCATAACGATAATCGAAGGGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000184 GO:0000956 GO:0002181 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0019538 GO:0019843 GO:0022414 GO:0022613 GO:0022625 GO:0022626 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0042254 GO:0042273 GO:0042886 GO:0043021 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 ko01130 ko03010 map00230 map01100 map01110 map01130 map03010
Pfam Domains
Protein Families
Ribosomal_L35Ae

Protein Analysis

843

Amino Acids

94.35

Weight (kDa)

6.37

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 83 - 185 2.4e-29 D-mannose binding lectin
S_locus_glycop PF00954 218 - 327 4.7e-28 S-locus glycoprotein domain
PAN_2 PF08276 361 - 422 8.2e-16 PAN-like domain
Pkinase PF00069 528 - 727 9.1e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 530 - 795 3.1e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1626
AasI GACNNNNNNGTC 1 cut(s) 944
AccB7I CCANNNNNTGG 1 cut(s) 575
AccBSI CCGCTC 1 cut(s) 1856
AccIII TCCGGA 1 cut(s) 2092
AciI CCGC 4 cut(s) 649, 1284, 1336, 1856
AclWI GGATC 4 cut(s) 560, 633, 646, 2052
AcsI RAATTY 5 cut(s) 40, 162, 535, 1802, 2001
AcuI CTGAAG 3 cut(s) 52, 117, 927
AcvI CACGTG 1 cut(s) 2078
AfaI GTAC 4 cut(s) 693, 761, 2343, 2485
AfeI AGCGCT 1 cut(s) 1457
AfiI CCNNNNNNNGG 3 cut(s) 575, 980, 2109
AflIII ACRYGT 3 cut(s) 887, 2075, 2085
AgsI TTSAA 9 cut(s) 170, 961, 1488, 1705, 1736, 1882, 1939, 1960, 2033
AjnI CCWGG 1 cut(s) 154
AjuI GAANNNNNNNTTGG 2 cut(s) 1596, 1628
AloI GAACNNNNNNTCC 4 cut(s) 337, 369, 411, 443
Alw21I GWGCWC 2 cut(s) 1521, 1863
Alw26I GTCTC 7 cut(s) 154, 1042, 1072, 1475, 1485, 2094, 2458
AlwI GGATC 4 cut(s) 560, 633, 646, 2052
Aor13HI TCCGGA 1 cut(s) 2092
Aor51HI AGCGCT 1 cut(s) 1457
AoxI GGCC 3 cut(s) 1615, 1869, 2363
ApeKI GCWGC 3 cut(s) 315, 398, 872
ApoI RAATTY 5 cut(s) 40, 162, 535, 1802, 2001
Asp700I GAANNNNTTC 1 cut(s) 2382
AspLEI GCGC 1 cut(s) 1458
AspS9I GGNCC 5 cut(s) 662, 911, 1245, 1616, 1869
AsuHPI GGTGA 2 cut(s) 569, 1298
AsuNHI GCTAGC 1 cut(s) 1306
AvaII GGWCC 3 cut(s) 662, 911, 1245
BamHI GGATCC 1 cut(s) 638
BanII GRGCYC 1 cut(s) 1863
BbrPI CACGTG 1 cut(s) 2078
Bbv12I GWGCWC 2 cut(s) 1521, 1863
BbvI GCAGC 3 cut(s) 327, 385, 859
BccI CCATC 5 cut(s) 335, 577, 809, 1082, 1096
BciT130I CCWGG 1 cut(s) 156
BciVI GTATCC 1 cut(s) 1819
BcoDI GTCTC 7 cut(s) 154, 1042, 1072, 1475, 1485, 2094, 2458
BfmI CTRYAG 4 cut(s) 399, 769, 2137, 2321
BfoI RGCGCY 1 cut(s) 1459
BfuI GTATCC 1 cut(s) 1819
BglII AGATCT 1 cut(s) 1291
BisI GCNGC 3 cut(s) 316, 399, 873
BlsI GCNGC 3 cut(s) 317, 400, 874
BmcAI AGTACT 1 cut(s) 2485
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 3 cut(s) 662, 911, 1245
BmgT120I GGNCC 5 cut(s) 662, 911, 1245, 1616, 1869
BmiI GGNNCC 3 cut(s) 19, 421, 640
BmrFI CCNGG 1 cut(s) 156
BmrI ACTGGG 1 cut(s) 585
BmsI GCATC 2 cut(s) 597, 1566
BmtI GCTAGC 1 cut(s) 1310
BmuI ACTGGG 1 cut(s) 585
BplI GAGNNNNNCTC 4 cut(s) 1262, 1294, 1845, 1877
BpmI CTGGAG 2 cut(s) 350, 673
Bpu10I CCTNAGC 1 cut(s) 1681
BpuEI CTTGAG 1 cut(s) 1207
BsaAI YACGTR 2 cut(s) 1215, 2078
BsaJI CCNNGG 2 cut(s) 665, 2103
BsaWI WCCGGW 1 cut(s) 2092
BsaXI ACNNNNNCTCC 4 cut(s) 646, 676, 2139, 2169
Bsc4I CCNNNNNNNGG 3 cut(s) 575, 980, 2109
Bse1I ACTGG 2 cut(s) 580, 1010
Bse3DI GCAATG 1 cut(s) 325
BseAI TCCGGA 1 cut(s) 2092
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 665, 2103
BseGI GGATG 1 cut(s) 1987
BseLI CCNNNNNNNGG 3 cut(s) 575, 980, 2109
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 4 cut(s) 1431, 1470, 1695, 2072
BseNI ACTGG 2 cut(s) 580, 1010
BseXI GCAGC 3 cut(s) 327, 385, 859
BseYI CCCAGC 1 cut(s) 505
BsgI GTGCAG 1 cut(s) 858
Bsh1285I CGRYCG 1 cut(s) 1525
BshFI GGCC 3 cut(s) 1617, 1871, 2365
BsiEI CGRYCG 1 cut(s) 1525
BsiHKAI GWGCWC 2 cut(s) 1521, 1863
BsiSI CCGG 1 cut(s) 2093
BslFI GGGAC 1 cut(s) 2050
BslI CCNNNNNNNGG 3 cut(s) 575, 980, 2109
BsmAI GTCTC 7 cut(s) 154, 1042, 1072, 1475, 1485, 2094, 2458
BsmBI CGTCTC 1 cut(s) 1042
BsmFI GGGAC 1 cut(s) 2050
BsnI GGCC 3 cut(s) 1617, 1871, 2365
Bsp1286I GDGCHC 2 cut(s) 1521, 1863
Bsp13I TCCGGA 1 cut(s) 2092
Bsp1407I TGTACA 1 cut(s) 2341
Bsp143I GATC 9 cut(s) 106, 565, 638, 1291, 1522, 1722, 1755, 1840, 2044
Bsp19I CCATGG 2 cut(s) 665, 2103
BspACI CCGC 4 cut(s) 649, 1284, 1336, 1856
BspANI GGCC 3 cut(s) 1617, 1871, 2365
BspCNI CTCAG 4 cut(s) 1430, 1471, 1694, 2071
BspEI TCCGGA 1 cut(s) 2092
BspHI TCATGA 2 cut(s) 1129, 1924
BspLI GGNNCC 3 cut(s) 19, 421, 640
BspMAI CTGCAG 2 cut(s) 403, 2325
BspOI GCTAGC 1 cut(s) 1310
BspPI GGATC 4 cut(s) 560, 633, 646, 2052
BspQI GCTCTTC 1 cut(s) 1846
BsrBI CCGCTC 1 cut(s) 1856
BsrDI GCAATG 1 cut(s) 325
BsrGI TGTACA 1 cut(s) 2341
BsrI ACTGG 2 cut(s) 580, 1010
BssECI CCNNGG 2 cut(s) 665, 2103
BssMI GATC 9 cut(s) 106, 565, 638, 1291, 1522, 1722, 1755, 1840, 2044
BssT1I CCWWGG 2 cut(s) 665, 2103
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 6 cut(s) 773, 829, 1172, 1182, 2411, 2472
Bst6I CTCTTC 3 cut(s) 1503, 1692, 1846
BstAUI TGTACA 1 cut(s) 2341
BstBAI YACGTR 2 cut(s) 1215, 2078
BstC8I GCNNGC 2 cut(s) 74, 1308
BstDEI CTNAG 7 cut(s) 716, 1417, 1452, 1479, 1681, 2058, 2393
BstDSI CCRYGG 2 cut(s) 665, 2103
BstF5I GGATG 1 cut(s) 1987
BstH2I RGCGCY 1 cut(s) 1459
BstHHI GCGC 1 cut(s) 1458
BstKTI GATC 9 cut(s) 109, 568, 641, 1294, 1525, 1725, 1758, 1843, 2047
BstMAI GTCTC 7 cut(s) 154, 1042, 1072, 1475, 1485, 2094, 2458
BstMBI GATC 9 cut(s) 106, 565, 638, 1291, 1522, 1722, 1755, 1840, 2044
BstMCI CGRYCG 1 cut(s) 1525
BstMWI GCNNNNNNNGC 1 cut(s) 2329
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 5 cut(s) 502, 891, 909, 2089, 2374
BstSCI CCNGG 1 cut(s) 154
BstSFI CTRYAG 4 cut(s) 399, 769, 2137, 2321
BstSNI TACGTA 1 cut(s) 1215
BstV1I GCAGC 3 cut(s) 327, 385, 859
BstX2I RGATCY 3 cut(s) 638, 1291, 2044
BstYI RGATCY 3 cut(s) 638, 1291, 2044
BsuI GTATCC 1 cut(s) 1819
BsuRI GGCC 3 cut(s) 1617, 1871, 2365
BtgI CCRYGG 2 cut(s) 665, 2103
BtsCI GGATG 1 cut(s) 1987
BtsIMutI CAGTG 1 cut(s) 1187
Cac8I GCNNGC 2 cut(s) 74, 1308
CciI TCATGA 2 cut(s) 1129, 1924
CfoI GCGC 1 cut(s) 1458
Cfr13I GGNCC 5 cut(s) 662, 911, 1245, 1616, 1869
CseI GACGC 2 cut(s) 1059, 1884
Csp6I GTAC 4 cut(s) 692, 760, 2342, 2484
CviQI GTAC 4 cut(s) 692, 760, 2342, 2484
DdeI CTNAG 7 cut(s) 716, 1417, 1452, 1479, 1681, 2058, 2393
DpnI GATC 9 cut(s) 108, 567, 640, 1293, 1524, 1724, 1757, 1842, 2046
DpnII GATC 9 cut(s) 106, 565, 638, 1291, 1522, 1722, 1755, 1840, 2044
DraI TTTAAA 1 cut(s) 39
DrdI GACNNNNNNGTC 1 cut(s) 944
DseDI GACNNNNNNGTC 1 cut(s) 944
Eam1104I CTCTTC 3 cut(s) 1503, 1692, 1846
EarI CTCTTC 3 cut(s) 1503, 1692, 1846
Ecl136II GAGCTC 1 cut(s) 1861
Eco105I TACGTA 1 cut(s) 1215
Eco130I CCWWGG 2 cut(s) 665, 2103
Eco24I GRGCYC 1 cut(s) 1863
Eco47I GGWCC 3 cut(s) 662, 911, 1245
Eco47III AGCGCT 1 cut(s) 1457
Eco53kI GAGCTC 1 cut(s) 1861
Eco57I CTGAAG 3 cut(s) 52, 117, 927
Eco72I CACGTG 1 cut(s) 2078
EcoICRI GAGCTC 1 cut(s) 1861
EcoRI GAATTC 1 cut(s) 1802
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 665, 2103
EcoT38I GRGCYC 1 cut(s) 1863
ErhI CCWWGG 2 cut(s) 665, 2103
Esp3I CGTCTC 1 cut(s) 1042
FaqI GGGAC 1 cut(s) 2050
FauI CCCGC 1 cut(s) 656
Fnu4HI GCNGC 3 cut(s) 316, 399, 873
FokI GGATG 1 cut(s) 1994
FriOI GRGCYC 1 cut(s) 1863
Fsp4HI GCNGC 3 cut(s) 316, 399, 873
GlaI GCGC 1 cut(s) 1457
GluI GCNGC 3 cut(s) 316, 399, 873
GsaI CCCAGC 1 cut(s) 509
GsuI CTGGAG 2 cut(s) 350, 673
HaeII RGCGCY 1 cut(s) 1459
HaeIII GGCC 3 cut(s) 1617, 1871, 2365
HapII CCGG 1 cut(s) 2093
HgaI GACGC 2 cut(s) 1059, 1884
HhaI GCGC 1 cut(s) 1458
Hin6I GCGC 1 cut(s) 1456
HinP1I GCGC 1 cut(s) 1456
HincII GTYRAC 4 cut(s) 366, 384, 543, 2301
HindII GTYRAC 4 cut(s) 366, 384, 543, 2301
HindIII AAGCTT 2 cut(s) 930, 1819
HinfI GANTC 9 cut(s) 482, 704, 723, 819, 1319, 1463, 1928, 1993, 2148
HpaII CCGG 1 cut(s) 2093
HphI GGTGA 2 cut(s) 569, 1298
Hpy166II GTNNAC 8 cut(s) 366, 384, 543, 692, 911, 2301, 2342, 2414
Hpy8I GTNNAC 8 cut(s) 366, 384, 543, 692, 911, 2301, 2342, 2414
HpyCH4III ACNGT 6 cut(s) 773, 829, 1172, 1182, 2411, 2472
HpyCH4IV ACGT 2 cut(s) 1214, 2077
HpyCH4V TGCA 9 cut(s) 281, 401, 794, 875, 927, 951, 1408, 1568, 2323
HpyF10VI GCNNNNNNNGC 1 cut(s) 2329
HpyF3I CTNAG 7 cut(s) 716, 1417, 1452, 1479, 1681, 2058, 2393
HpySE526I ACGT 2 cut(s) 1214, 2077
HspAI GCGC 1 cut(s) 1456
Kpn2I TCCGGA 1 cut(s) 2092
Kzo9I GATC 9 cut(s) 106, 565, 638, 1291, 1522, 1722, 1755, 1840, 2044
LguI GCTCTTC 1 cut(s) 1846
LmnI GCTCC 6 cut(s) 331, 446, 902, 993, 1589, 1858
Lsp1109I GCAGC 3 cut(s) 327, 385, 859
LweI GCATC 2 cut(s) 597, 1566
MaeII ACGT 2 cut(s) 1214, 2077
MaeIII GTNAC 6 cut(s) 283, 479, 1444, 1771, 1788, 2399
MalI GATC 9 cut(s) 108, 567, 640, 1293, 1524, 1724, 1757, 1842, 2046
MbiI CCGCTC 1 cut(s) 1856
MboI GATC 9 cut(s) 106, 565, 638, 1291, 1522, 1722, 1755, 1840, 2044
MfeI CAATTG 2 cut(s) 1467, 1864
MflI RGATCY 3 cut(s) 638, 1291, 2044
MhlI GDGCHC 2 cut(s) 1521, 1863
MlyI GAGTC 3 cut(s) 476, 1472, 2157
MmeI TCCRAC 2 cut(s) 571, 2355
MroI TCCGGA 1 cut(s) 2092
MroXI GAANNNNTTC 1 cut(s) 2382
MseI TTAA 6 cut(s) 38, 824, 864, 1562, 1752, 2261
MspA1I CMGCKG 2 cut(s) 398, 651
MspI CCGG 1 cut(s) 2093
MspR9I CCNGG 1 cut(s) 156
MunI CAATTG 2 cut(s) 1467, 1864
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 2329
NcoI CCATGG 2 cut(s) 665, 2103
NdeII GATC 9 cut(s) 106, 565, 638, 1291, 1522, 1722, 1755, 1840, 2044
NheI GCTAGC 1 cut(s) 1306
NlaIV GGNNCC 3 cut(s) 19, 421, 640
NmeAIII GCCGAG 1 cut(s) 1578
NmuCI GTSAC 2 cut(s) 479, 1771
NspI RCATGY 5 cut(s) 502, 891, 909, 2089, 2374
PagI TCATGA 2 cut(s) 1129, 1924
PciI ACATGT 2 cut(s) 887, 2085
PciSI GCTCTTC 1 cut(s) 1846
PdmI GAANNNNTTC 1 cut(s) 2382
PfeI GAWTC 6 cut(s) 704, 723, 819, 1319, 1928, 1993
PflMI CCANNNNNTGG 1 cut(s) 575
PkrI GCNGC 3 cut(s) 317, 400, 874
Ple19I CGATCG 1 cut(s) 1525
PleI GAGTC 3 cut(s) 476, 1471, 2156
PmaCI CACGTG 1 cut(s) 2078
PmlI CACGTG 1 cut(s) 2078
PpsI GAGTC 3 cut(s) 476, 1471, 2156
Ppu21I YACGTR 2 cut(s) 1215, 2078
PscI ACATGT 2 cut(s) 887, 2085
PsiI TTATAA 1 cut(s) 1626
Psp124BI GAGCTC 1 cut(s) 1863
Psp6I CCWGG 1 cut(s) 154
PspCI CACGTG 1 cut(s) 2078
PspFI CCCAGC 1 cut(s) 505
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 19, 421, 640
PspPI GGNCC 5 cut(s) 662, 911, 1245, 1616, 1869
PstI CTGCAG 2 cut(s) 403, 2325
PsuI RGATCY 3 cut(s) 638, 1291, 2044
PvuI CGATCG 1 cut(s) 1525
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 4 cut(s) 693, 761, 2343, 2485
RsaNI GTAC 4 cut(s) 692, 760, 2342, 2484
SacI GAGCTC 1 cut(s) 1863
SapI GCTCTTC 1 cut(s) 1846
SaqAI TTAA 6 cut(s) 38, 824, 864, 1562, 1752, 2261
SatI GCNGC 3 cut(s) 316, 399, 873
Sau3AI GATC 9 cut(s) 106, 565, 638, 1291, 1522, 1722, 1755, 1840, 2044
Sau96I GGNCC 5 cut(s) 662, 911, 1245, 1616, 1869
ScaI AGTACT 1 cut(s) 2485
SchI GAGTC 3 cut(s) 476, 1472, 2157
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 2 cut(s) 1521, 1863
SfaNI GCATC 2 cut(s) 597, 1566
SfcI CTRYAG 4 cut(s) 399, 769, 2137, 2321
SinI GGWCC 3 cut(s) 662, 911, 1245
SmlI CTYRAG 1 cut(s) 1186
SmoI CTYRAG 1 cut(s) 1186
SnaBI TACGTA 1 cut(s) 1215
SsiI CCGC 4 cut(s) 649, 1284, 1336, 1856
SspI AATATT 2 cut(s) 1885, 1972
SstI GAGCTC 1 cut(s) 1863
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 2 cut(s) 665, 2103
TaaI ACNGT 6 cut(s) 773, 829, 1172, 1182, 2411, 2472
TaiI ACGT 2 cut(s) 1217, 2080
TaqI TCGA 3 cut(s) 377, 526, 2520
TaqII GACCGA 1 cut(s) 2220
TatI WGTACW 2 cut(s) 2341, 2483
TfiI GAWTC 6 cut(s) 704, 723, 819, 1319, 1928, 1993
Tru1I TTAA 6 cut(s) 38, 824, 864, 1562, 1752, 2261
Tru9I TTAA 6 cut(s) 38, 824, 864, 1562, 1752, 2261
TscAI CASTG 1 cut(s) 1187
TseFI GTSAC 2 cut(s) 479, 1771
TseI GCWGC 3 cut(s) 315, 398, 872
Tsp45I GTSAC 2 cut(s) 479, 1771
TspRI CASTG 1 cut(s) 1187
Van91I CCANNNNNTGG 1 cut(s) 575
VpaK11BI GGWCC 3 cut(s) 662, 911, 1245
XapI RAATTY 5 cut(s) 40, 162, 535, 1802, 2001
XbaI TCTAGA 3 cut(s) 730, 1501, 2047
XceI RCATGY 5 cut(s) 502, 891, 909, 2089, 2374
XmnI GAANNNNTTC 1 cut(s) 2382
ZrmI AGTACT 1 cut(s) 2485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.