Rh2CG433900

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
58995419 .. 59002745
7327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG433900.1

Sequence Viewer

Length: 405 bp
ATGTCGCTAATCCTTCGAAAGCTTCAAGATTTTCACCATGGGGGAGCTTGTTCTAGGAAGAGAAACCATCGAGATGATGAAGATAATTTTCCTAGAGGGATTTCCAGAAGATATTCAAAAAGTGGGAGTTCAAAGTGCTTGGCAACCTCCTTCTCTCGACCTGCTATAGATATTCAACATGAAAAAGGGCAATGCCCATCCCTCATGGACTTCTACGTACGGCAAATACGTGAGATTCCATGCACAAGAGATGTGCCACTAGAGGCAAGAAGAAGGCGTGGAGAAAGAATCGAAAATCTTTATTTACGTTTGAGAAATATTCCCTCCTTCTTTGACTCTCTCTTCTACCGAAACATTATGACAACCACTCAAGCAACTTTCGCTGGTGAAGATACTAGGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

134

Amino Acids

15.74

Weight (kDa)

9.95

Isoelectric Point (pI)

78.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 169
AfaI GTAC 1 cut(s) 219
AgsI TTSAA 4 cut(s) 26, 117, 132, 176
AluBI AGCT 2 cut(s) 22, 47
AluI AGCT 2 cut(s) 22, 47
Asp700I GAANNNNTTC 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 26, 398
AsuII TTCGAA 1 cut(s) 16
BccI CCATC 2 cut(s) 75, 205
BceAI ACGGC 1 cut(s) 236
BfaI CTAG 4 cut(s) 54, 93, 260, 396
BfmI CTRYAG 1 cut(s) 165
BfuAI ACCTGC 1 cut(s) 169
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 354
BsaAI YACGTR 2 cut(s) 217, 230
BsaJI CCNNGG 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 197
BsiWI CGTACG 1 cut(s) 217
Bsp119I TTCGAA 1 cut(s) 16
Bsp19I CCATGG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 169
BspT104I TTCGAA 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 37
Bst6I CTCTTC 2 cut(s) 53, 347
BstBAI YACGTR 2 cut(s) 217, 230
BstBI TTCGAA 1 cut(s) 16
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 197
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstSFI CTRYAG 1 cut(s) 165
BstSNI TACGTA 1 cut(s) 217
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 197
BveI ACCTGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 218
CviAII CATG 4 cut(s) 38, 179, 205, 240
CviJI RGCY 2 cut(s) 22, 47
CviKI_1 RGCY 2 cut(s) 22, 47
CviQI GTAC 1 cut(s) 218
Eam1104I CTCTTC 2 cut(s) 53, 347
EarI CTCTTC 2 cut(s) 53, 347
Eco105I TACGTA 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 4 cut(s) 41, 182, 208, 243
FaiI YATR 7 cut(s) 39, 167, 180, 206, 241, 359, 403
FatI CATG 4 cut(s) 37, 178, 204, 239
FokI GGATG 1 cut(s) 184
FspBI CTAG 4 cut(s) 54, 93, 260, 396
Hin1II CATG 4 cut(s) 41, 182, 208, 243
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 3 cut(s) 235, 288, 335
HphI GGTGA 2 cut(s) 26, 398
Hpy188III TCNNGA 4 cut(s) 26, 71, 105, 156
HpyAV CCTTC 4 cut(s) 23, 160, 267, 337
HpyCH4IV ACGT 3 cut(s) 216, 229, 307
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpySE526I ACGT 3 cut(s) 216, 229, 307
Hsp92II CATG 4 cut(s) 41, 182, 208, 243
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 3 cut(s) 118, 174, 369
MaeI CTAG 4 cut(s) 54, 93, 260, 396
MaeII ACGT 3 cut(s) 216, 229, 307
MboII GAAGA 6 cut(s) 70, 92, 120, 282, 334, 401
MluCI AATT 1 cut(s) 85
MlyI GAGTC 1 cut(s) 329
MnlI CCTC 5 cut(s) 89, 157, 212, 256, 334
MroXI GAANNNNTTC 1 cut(s) 112
MslI CAYNNNNRTG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 380
NcoI CCATGG 1 cut(s) 37
NlaIII CATG 4 cut(s) 41, 182, 208, 243
NspV TTCGAA 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 235, 288
Pfl23II CGTACG 1 cut(s) 217
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
Ppu21I YACGTR 2 cut(s) 217, 230
PsiI TTATAA 1 cut(s) 403
PspLI CGTACG 1 cut(s) 217
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 72
SchI GAGTC 1 cut(s) 329
SetI ASST 8 cut(s) 24, 49, 149, 163, 219, 232, 310, 401
SfcI CTRYAG 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
SnaBI TACGTA 1 cut(s) 217
Sse9I AATT 1 cut(s) 85
SspI AATATT 1 cut(s) 319
SspMI CTAG 4 cut(s) 54, 93, 260, 396
StyI CCWWGG 1 cut(s) 37
TaiI ACGT 3 cut(s) 219, 232, 310
TaqI TCGA 4 cut(s) 16, 70, 157, 291
TasI AATT 1 cut(s) 85
TfiI GAWTC 2 cut(s) 235, 288
TspDTI ATGAA 2 cut(s) 93, 195
XmnI GAANNNNTTC 1 cut(s) 112
XspI CTAG 4 cut(s) 54, 93, 260, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.