Rorug01G0472300

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000551
Physical Location & Seq
Reverse (-)
56291557 .. 56295816
4260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0472300.1

Sequence Viewer

Length: 906 bp
ATGAATTACATAATTGGAGCATTCAAACCATCTTGCAACATTTCAATCACATTTTCTGATGCAAAAACTCGCAAGCAGGTTCCATTAAAGAAGGAAGGTGGTCAAGCAGTATCCGTCCCACTCTTTCAAAGTCAAGAAAACATTTCTGGGAAGATTTCTATTGAACCAATTCAAGGGAAAAAGGTTGAACACAATGGAGTGAAAGTTGAGCTCCTTGGTCAAATAGAGATGTACTTTGACAGAGGCAACTTTTATGACTTTACTTCCCTTGTTCGTGAACTTGATGTTCCTGGAGAGATATATGAAAGGAAGACATATCCTTTTGAGTTTTCTACAGTTGAAATGCCTTATGAGACTTACAATGGTGTCAATGTGAGGCTTAGGTATGTTCTGAAAGTCACAGTTAGTCGTGGTTATGGTGGTAGCATAGTGGAATACCAAGATTTTGTGGTTCGCAACTATACCCCAACCCCATCTATCAACAATAGCATCAAGATGGAAGTGGGAATTGAGGATTGTCTGCACATTGAGTTCGAGTATAACAAGAGCAAGTACCACCTGAAAGATGTTATTATTGGCAAGATATATTTTCTTCTAGTAAGAATCAAGATAAAGAATATGGATCTGGAGATCAGGCGTCGAGAGTCAACAGGGTCGGGGCCCAATACCCATGTTGAGACAGAGACACTTGCTAAGTTTGAATTAATGGATGGTGCTCCAGTCAGAGGTGAATCTATTCCCATTAGACTGTTTCTTAGCCCTTATGAACTGACACCTACACATCGCAACATCAACAATAAATTCAGCGTGAAGTATTATTTGAATCTTGTTTTGGTTGATGAGGAGGACCGACGATATTTCAAACAGCAAGAGATCACCATATACAGGCTTCAAGAGACTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

301

Amino Acids

34.91

Weight (kDa)

7.68

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps26 PF03643 8 - 283 6.7e-132 Vacuolar protein sorting-associated protein 26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 67
AclWI GGATC 1 cut(s) 630
AcsI RAATTY 1 cut(s) 800
AcyI GRCGYC 1 cut(s) 637
AfaI GTAC 2 cut(s) 233, 554
AfiI CCNNNNNNNGG 3 cut(s) 173, 725, 885
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw21I GWGCWC 2 cut(s) 213, 718
Alw26I GTCTC 4 cut(s) 347, 671, 677, 890
AlwI GGATC 1 cut(s) 630
AoxI GGCC 1 cut(s) 659
ApaI GGGCCC 1 cut(s) 663
ApoI RAATTY 1 cut(s) 800
AseI ATTAAT 1 cut(s) 704
Asp700I GAANNNNTTC 2 cut(s) 168, 735
AspS9I GGNCC 3 cut(s) 659, 660, 847
AsuHPI GGTGA 2 cut(s) 740, 868
AvaII GGWCC 1 cut(s) 847
BaeGI GKGCMC 1 cut(s) 663
BanII GRGCYC 2 cut(s) 213, 663
BbsI GAAGAC 1 cut(s) 317
Bbv12I GWGCWC 2 cut(s) 213, 718
BccI CCATC 4 cut(s) 37, 481, 490, 704
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 1 cut(s) 121
BcoDI GTCTC 4 cut(s) 347, 671, 677, 890
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 67
BfuI GTATCC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 847
BmgT120I GGNCC 3 cut(s) 659, 660, 847
BmiI GGNNCC 3 cut(s) 81, 660, 661
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 2 cut(s) 49, 498
BpiI GAAGAC 1 cut(s) 317
BpmI CTGGAG 3 cut(s) 312, 647, 702
Bpu10I CCTNAGC 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 637
BsaJI CCNNGG 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 725, 885
Bse1I ACTGG 1 cut(s) 719
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 715
BseLI CCNNNNNNNGG 3 cut(s) 173, 725, 885
BseNI ACTGG 1 cut(s) 719
BseRI GAGGAG 1 cut(s) 857
BseSI GKGCMC 1 cut(s) 663
BsgI GTGCAG 1 cut(s) 506
BshFI GGCC 1 cut(s) 661
BsiHKAI GWGCWC 2 cut(s) 213, 718
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 3 cut(s) 173, 725, 885
BsmAI GTCTC 4 cut(s) 347, 671, 677, 890
BsmFI GGGAC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 1 cut(s) 661
Bsp120I GGGCCC 1 cut(s) 659
Bsp1286I GDGCHC 3 cut(s) 213, 663, 718
Bsp143I GATC 3 cut(s) 622, 630, 873
BspANI GGCC 1 cut(s) 661
BspHI TCATGA 1 cut(s) 902
BspLI GGNNCC 3 cut(s) 81, 660, 661
BspMI ACCTGC 1 cut(s) 67
BspPI GGATC 1 cut(s) 630
BsrI ACTGG 1 cut(s) 719
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 3 cut(s) 622, 630, 873
BssNI GRCGYC 1 cut(s) 637
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 337, 403, 750
BstACI GRCGYC 1 cut(s) 637
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 3 cut(s) 380, 693, 755
BstF5I GGATG 1 cut(s) 715
BstKTI GATC 3 cut(s) 625, 633, 876
BstMAI GTCTC 4 cut(s) 347, 671, 677, 890
BstMBI GATC 3 cut(s) 622, 630, 873
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 333
BstSLI GKGCMC 1 cut(s) 663
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BsuI GTATCC 1 cut(s) 121
BsuRI GGCC 1 cut(s) 661
BtgZI GCGATG 1 cut(s) 767
BtsCI GGATG 1 cut(s) 715
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 74
CciI TCATGA 1 cut(s) 902
Cfr13I GGNCC 3 cut(s) 659, 660, 847
CseI GACGC 1 cut(s) 626
Csp6I GTAC 2 cut(s) 232, 553
CviAII CATG 2 cut(s) 671, 903
CviJI RGCY 5 cut(s) 211, 379, 661, 759, 889
CviKI_1 RGCY 5 cut(s) 211, 379, 661, 759, 889
CviQI GTAC 2 cut(s) 232, 553
DdeI CTNAG 3 cut(s) 380, 693, 755
DpnI GATC 3 cut(s) 624, 632, 875
DpnII GATC 3 cut(s) 622, 630, 873
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 214
Eco24I GRGCYC 2 cut(s) 213, 663
Eco47I GGWCC 1 cut(s) 847
Eco53kI GAGCTC 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 659
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 214
EcoT38I GRGCYC 2 cut(s) 213, 663
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 2 cut(s) 674, 906
FaqI GGGAC 1 cut(s) 101
FatI CATG 2 cut(s) 670, 902
FokI GGATG 1 cut(s) 722
FriOI GRGCYC 2 cut(s) 213, 663
FspBI CTAG 1 cut(s) 596
GsuI CTGGAG 3 cut(s) 312, 647, 702
HaeIII GGCC 1 cut(s) 661
HgaI GACGC 1 cut(s) 626
Hin1I GRCGYC 1 cut(s) 637
Hin1II CATG 2 cut(s) 674, 906
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HinfI GANTC 4 cut(s) 603, 644, 731, 823
HphI GGTGA 2 cut(s) 740, 868
Hpy166II GTNNAC 2 cut(s) 278, 648
Hpy188I TCNGA 3 cut(s) 58, 393, 725
Hpy188III TCNNGA 8 cut(s) 134, 275, 493, 607, 626, 641, 893, 903
Hpy8I GTNNAC 2 cut(s) 278, 648
Hpy99I CGWCG 2 cut(s) 642, 855
HpyAV CCTTC 2 cut(s) 85, 89
HpyCH4III ACNGT 3 cut(s) 337, 403, 750
HpyCH4V TGCA 3 cut(s) 36, 62, 523
HpyF3I CTNAG 3 cut(s) 380, 693, 755
Hsp92I GRCGYC 1 cut(s) 637
Hsp92II CATG 2 cut(s) 674, 906
Kzo9I GATC 3 cut(s) 622, 630, 873
LmnI GCTCC 3 cut(s) 17, 216, 721
LweI GCATC 2 cut(s) 49, 498
MaeI CTAG 1 cut(s) 596
MaeIII GTNAC 1 cut(s) 397
MalI GATC 3 cut(s) 624, 632, 875
MboI GATC 3 cut(s) 622, 630, 873
MboII GAAGA 3 cut(s) 163, 322, 584
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 3 cut(s) 213, 663, 718
MluCI AATT 6 cut(s) 4, 12, 168, 507, 701, 800
MlyI GAGTC 1 cut(s) 653
MnlI CCTC 6 cut(s) 236, 369, 505, 719, 835, 838
MroXI GAANNNNTTC 2 cut(s) 168, 735
MseI TTAA 2 cut(s) 86, 704
MslI CAYNNNNRTG 1 cut(s) 494
MspR9I CCNGG 1 cut(s) 291
Mva1269I GAATGC 1 cut(s) 20
MvaI CCWGG 1 cut(s) 291
NdeII GATC 3 cut(s) 622, 630, 873
NlaIII CATG 2 cut(s) 674, 906
NlaIV GGNNCC 3 cut(s) 81, 660, 661
NmuCI GTSAC 1 cut(s) 397
PagI TCATGA 1 cut(s) 902
PctI GAATGC 1 cut(s) 20
PdmI GAANNNNTTC 2 cut(s) 168, 735
PfeI GAWTC 3 cut(s) 603, 731, 823
PfoI TCCNGGA 1 cut(s) 289
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
PshBI ATTAAT 1 cut(s) 704
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 81, 660, 661
PspOMI GGGCCC 1 cut(s) 659
PspPI GGNCC 3 cut(s) 659, 660, 847
PsuI RGATCY 1 cut(s) 622
RsaI GTAC 2 cut(s) 233, 554
RsaNI GTAC 2 cut(s) 232, 553
RseI CAYNNNNRTG 1 cut(s) 494
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 86, 704
Sau3AI GATC 3 cut(s) 622, 630, 873
Sau96I GGNCC 3 cut(s) 659, 660, 847
SchI GAGTC 1 cut(s) 653
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 3 cut(s) 213, 663, 718
SetI ASST 8 cut(s) 81, 100, 186, 213, 386, 561, 730, 778
SfaNI GCATC 2 cut(s) 49, 498
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 847
SmiMI CAYNNNNRTG 1 cut(s) 494
Sse9I AATT 6 cut(s) 4, 12, 168, 507, 701, 800
SspMI CTAG 1 cut(s) 596
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 3 cut(s) 337, 403, 750
TaqI TCGA 2 cut(s) 534, 640
TaqII GACCGA 1 cut(s) 864
TasI AATT 6 cut(s) 4, 12, 168, 507, 701, 800
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 3 cut(s) 603, 731, 823
Tru1I TTAA 2 cut(s) 86, 704
Tru9I TTAA 2 cut(s) 86, 704
TseFI GTSAC 1 cut(s) 397
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 4 cut(s) 17, 318, 780, 891
TspGWI ACGGA 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 847
VspI ATTAAT 1 cut(s) 704
XapI RAATTY 1 cut(s) 800
XmnI GAANNNNTTC 2 cut(s) 168, 735
XspI CTAG 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.