Rorug02G0316800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000551
Physical Location & Seq
Forward (+)
38622729 .. 38624967
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0316800.1

Sequence Viewer

Length: 702 bp
ATGCGGAGGTCGATTGCGAGTCTGGGTGGGTCCCTCGTCAAAAGCCGAGGGTTTAGCACGAGCTCGTCGCCGGAGAAAATCGTCGCGTCCGTACTCTTCGAGAGGCTCCCGGTTGTTATTCCCAAAATCGACCCCATCGTCTATGCATTTAAGGAGTTCTCGTTTCGGTGGCGACAGCAATATCGACGCAGATATCCAGATGAACTTTTAGACAAGTCTAATGCTAGGGGAAAAGGAGACTACCAAATTGATTATGTACCAGCTCCACGGATCACTGAAGCTGACAAACAAAATGATAGAAAGTCATTGCAGAGAGCACTTGACAGAAGACTTTATCTTCTTATCTATGGTAACACACTTGGATCTCCTAATGGAAAGCCAGTCTGGCATTTTCCAGAAAAAGTGTACGAGTCTGAGGAGACATTGCGGAAGTGTGCAGAATCTGCATTACTGTCTGTCCTAGGTGATCTGTCCCACACATATTTTGTTAGAAATGCTCCTATGGGACATATTGCAATGGAGTCATCAGCGAATGTGACCGACTCTCCATCTTTCAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACAAACAAGTTAAAAATTGGGAAGTGTGAGGATTTTGTTTGGGTGACCAAGGATGAATTGATGGAATATTTTCCTGAGAAAGCTGAGTTCCTCAGCAAGATGATCATTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

233

Amino Acids

26.78

Weight (kDa)

9.38

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AccII CGCG 1 cut(s) 86
AciI CCGC 2 cut(s) 4, 427
AclWI GGATC 2 cut(s) 278, 370
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 3 cut(s) 93, 258, 407
AgsI TTSAA 2 cut(s) 556, 571
AluBI AGCT 5 cut(s) 63, 263, 281, 671, 699
AluI AGCT 5 cut(s) 63, 263, 281, 671, 699
Alw21I GWGCWC 2 cut(s) 65, 319
Alw26I GTCTC 3 cut(s) 231, 413, 579
AlwI GGATC 2 cut(s) 278, 370
AlwNI CAGNNNCTG 1 cut(s) 443
Asp700I GAANNNNTTC 1 cut(s) 657
AspA2I CCTAGG 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 30
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 476, 643
AvaII GGWCC 1 cut(s) 30
AvrII CCTAGG 1 cut(s) 460
BanII GRGCYC 1 cut(s) 65
BauI CACGAG 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 334
Bbv12I GWGCWC 2 cut(s) 65, 319
BbvCI CCTCAGC 1 cut(s) 680
BccI CCATC 3 cut(s) 143, 556, 643
BclI TGATCA 1 cut(s) 690
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 3 cut(s) 231, 413, 579
BfaI CTAG 2 cut(s) 225, 461
BglI GCCNNNNNGGC 1 cut(s) 385
BlnI CCTAGG 1 cut(s) 460
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 3 cut(s) 31, 32, 107
BmrFI CCNGG 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 334
Bpu10I CCTNAGC 1 cut(s) 680
BpuEI CTTGAG 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 110
BsaJI CCNNGG 4 cut(s) 46, 266, 460, 636
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 529, 559
Bse1I ACTGG 1 cut(s) 380
Bse3DI GCAATG 3 cut(s) 305, 422, 522
BseDI CCNNGG 4 cut(s) 46, 266, 460, 636
BseGI GGATG 1 cut(s) 646
BseMI GCAATG 3 cut(s) 305, 422, 522
BseMII CTCAG 4 cut(s) 405, 654, 663, 694
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 456
Bsh1236I CGCG 1 cut(s) 86
BsiHKAI GWGCWC 2 cut(s) 65, 319
BsiSI CCGG 2 cut(s) 71, 110
BslFI GGGAC 3 cut(s) 16, 457, 519
BsmAI GTCTC 3 cut(s) 231, 413, 579
BsmFI GGGAC 3 cut(s) 16, 457, 519
Bsp1286I GDGCHC 2 cut(s) 65, 319
Bsp143I GATC 4 cut(s) 270, 362, 466, 690
BspACI CCGC 2 cut(s) 4, 427
BspCNI CTCAG 4 cut(s) 406, 655, 664, 693
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 3 cut(s) 31, 32, 107
BspPI GGATC 2 cut(s) 278, 370
BsrDI GCAATG 3 cut(s) 305, 422, 522
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 4 cut(s) 46, 266, 460, 636
BssMI GATC 4 cut(s) 270, 362, 466, 690
BssSI CACGAG 1 cut(s) 58
BssT1I CCWWGG 2 cut(s) 460, 636
Bst2BI CACGAG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 453
Bst6I CTCTTC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 443
BstDEI CTNAG 4 cut(s) 414, 663, 672, 680
BstDSI CCRYGG 1 cut(s) 266
BstEII GGTNACC 1 cut(s) 631
BstF5I GGATG 1 cut(s) 646
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 4 cut(s) 273, 365, 469, 693
BstMAI GTCTC 3 cut(s) 231, 413, 579
BstMBI GATC 4 cut(s) 270, 362, 466, 690
BstMWI GCNNNNNNNGC 2 cut(s) 385, 443
BstPI GGTNACC 1 cut(s) 631
BstSCI CCNGG 1 cut(s) 108
BstUI CGCG 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BtgI CCRYGG 1 cut(s) 266
BtsCI GGATG 1 cut(s) 646
BtsIMutI CAGTG 1 cut(s) 273
CaiI CAGNNNCTG 1 cut(s) 443
Cfr13I GGNCC 1 cut(s) 30
CseI GACGC 2 cut(s) 75, 195
Csp6I GTAC 3 cut(s) 92, 257, 406
CviJI RGCY 8 cut(s) 45, 63, 106, 263, 281, 379, 671, 699
CviKI_1 RGCY 8 cut(s) 45, 63, 106, 263, 281, 379, 671, 699
CviQI GTAC 3 cut(s) 92, 257, 406
DdeI CTNAG 4 cut(s) 414, 663, 672, 680
DpnI GATC 4 cut(s) 272, 364, 468, 692
DpnII GATC 4 cut(s) 270, 362, 466, 690
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 460, 636
Eco24I GRGCYC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 631
EcoICRI GAGCTC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 631
EcoRV GATATC 1 cut(s) 194
EcoT14I CCWWGG 2 cut(s) 460, 636
EcoT22I ATGCAT 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 2 cut(s) 460, 636
FaiI YATR 6 cut(s) 144, 255, 348, 481, 503, 510
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 3 cut(s) 16, 457, 519
FbaI TGATCA 1 cut(s) 690
FokI GGATG 1 cut(s) 653
FriOI GRGCYC 1 cut(s) 65
FspBI CTAG 2 cut(s) 225, 461
HapII CCGG 2 cut(s) 71, 110
HgaI GACGC 2 cut(s) 75, 195
HinfI GANTC 5 cut(s) 19, 410, 440, 521, 542
HpaII CCGG 2 cut(s) 71, 110
HphI GGTGA 2 cut(s) 476, 643
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 4 cut(s) 100, 197, 395, 662
Hpy8I GTNNAC 1 cut(s) 406
Hpy99I CGWCG 3 cut(s) 70, 86, 189
HpyCH4III ACNGT 1 cut(s) 453
HpyCH4V TGCA 6 cut(s) 146, 310, 437, 446, 515, 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 385, 443
HpyF3I CTNAG 4 cut(s) 414, 663, 672, 680
KflI GGGWCCC 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 4 cut(s) 270, 362, 466, 690
LmnI GCTCC 3 cut(s) 111, 268, 502
LpnPI CCDG 9 cut(s) 8, 84, 123, 210, 273, 370, 393, 408, 675
MaeI CTAG 2 cut(s) 225, 461
MaeIII GTNAC 3 cut(s) 350, 535, 631
MalI GATC 4 cut(s) 272, 364, 468, 692
MboI GATC 4 cut(s) 270, 362, 466, 690
MboII GAAGA 3 cut(s) 88, 329, 339
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 2 cut(s) 65, 319
MluCI AATT 4 cut(s) 246, 560, 603, 644
MlyI GAGTC 4 cut(s) 28, 419, 530, 536
MnlI CCTC 6 cut(s) 41, 44, 96, 409, 610, 689
Mph1103I ATGCAT 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 657
MseI TTAA 2 cut(s) 150, 599
MspI CCGG 2 cut(s) 71, 110
MspR9I CCNGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 385, 443
NciI CCSGG 1 cut(s) 110
NdeII GATC 4 cut(s) 270, 362, 466, 690
NlaIV GGNNCC 3 cut(s) 31, 32, 107
NmeAIII GCCGAG 1 cut(s) 71
NmuCI GTSAC 2 cut(s) 535, 631
NsiI ATGCAT 1 cut(s) 148
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 135
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 1 cut(s) 440
PleI GAGTC 4 cut(s) 27, 418, 529, 536
PpsI GAGTC 4 cut(s) 27, 418, 529, 536
PpuMI RGGWCCY 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 30
PspEI GGTNACC 1 cut(s) 631
PspN4I GGNNCC 3 cut(s) 31, 32, 107
PspPI GGNCC 1 cut(s) 30
PspPPI RGGWCCY 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 443
PsuI RGATCY 1 cut(s) 362
RsaI GTAC 3 cut(s) 93, 258, 407
RsaNI GTAC 3 cut(s) 92, 257, 406
SacI GAGCTC 1 cut(s) 65
SaqAI TTAA 2 cut(s) 150, 599
Sau3AI GATC 4 cut(s) 270, 362, 466, 690
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 4 cut(s) 28, 419, 530, 536
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 2 cut(s) 65, 319
SetI ASST 7 cut(s) 11, 65, 265, 283, 466, 673, 701
SinI GGWCC 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
Sse9I AATT 4 cut(s) 246, 560, 603, 644
SsiI CCGC 2 cut(s) 4, 427
SspI AATATT 1 cut(s) 656
SspMI CTAG 2 cut(s) 225, 461
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 2 cut(s) 460, 636
TaaI ACNGT 1 cut(s) 453
TaqI TCGA 4 cut(s) 11, 99, 129, 184
TaqII GACCGA 1 cut(s) 554
TasI AATT 4 cut(s) 246, 560, 603, 644
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 2 cut(s) 150, 599
Tru9I TTAA 2 cut(s) 150, 599
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 2 cut(s) 535, 631
Tsp45I GTSAC 2 cut(s) 535, 631
TspDTI ATGAA 2 cut(s) 216, 657
TspGWI ACGGA 2 cut(s) 79, 283
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 30
XmaJI CCTAGG 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 2 cut(s) 225, 461
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.