Rmu_co8182664.1_g000001

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8182664.1
OG0000551
Physical Location & Seq
Reverse (-)
2 .. 688
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8182664.1_g000001.1.cds

Sequence Viewer

Length: 514 bp
aaccggtcattgaagaaggcggtgttagtagggtagtgtccggaagatatggtaaaagtagcagttcaaaatggctaggaacttcgtcttttcgttccactgtagaacagtctccaggagtagcaggcatttgcccatctctcttggaattatgcatttccaaaatatgccgggacattgacaaatacagtacgctttccctgctgcctagggatgtgagtcagcaaatctttaatgaattggtctcttcccaatctcttactcatgattctctccaggcttttagagattgtgctcttgaggatgtttgtttgggtgaatacccttctgtgaatgataattggatggatgccatctgttcacaaggttcatctctactatctgttgatctctctggttctgaggtgacagatgctggattggatcttctaaaagactgctcgaacctccaatcattaacttataattactgtgaccatgtttcagaacatggacttaagcacatcagtggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

170

Amino Acids

18.36

Weight (kDa)

4.65

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 1 cut(s) 20
AclWI GGATC 1 cut(s) 431
AfaI GTAC 1 cut(s) 192
AflII CTTAAG 1 cut(s) 496
AgeI ACCGGT 1 cut(s) 3
AgsI TTSAA 2 cut(s) 13, 68
AjnI CCWGG 2 cut(s) 114, 275
AleI CACNNNNGTG 1 cut(s) 506
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 116, 249
AlwI GGATC 1 cut(s) 431
AlwNI CAGNNNCTG 1 cut(s) 415
Aor13HI TCCGGA 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 204
AsiGI ACCGGT 1 cut(s) 3
AspA2I CCTAGG 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 328, 417
AvrII CCTAGG 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 191
BccI CCATC 3 cut(s) 144, 339, 361
BciT130I CCWGG 2 cut(s) 116, 277
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 116, 249
BfaI CTAG 2 cut(s) 76, 209
BfmI CTRYAG 1 cut(s) 101
BfrI CTTAAG 1 cut(s) 496
BisI GCNGC 1 cut(s) 205
BlnI CCTAGG 1 cut(s) 208
BlsI GCNGC 1 cut(s) 206
Bme1390I CCNGG 3 cut(s) 116, 172, 277
BmrFI CCNGG 3 cut(s) 116, 172, 277
BmsI GCATC 2 cut(s) 339, 402
BpmI CTGGAG 2 cut(s) 98, 259
BpuEI CTTGAG 1 cut(s) 319
BpuMI CCSGG 1 cut(s) 172
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 208
BsaWI WCCGGW 2 cut(s) 3, 40
Bse118I RCCGGY 1 cut(s) 3
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 2 cut(s) 116, 277
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 4 cut(s) 219, 309, 350, 354
BseMII CTCAG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 191
BshTI ACCGGT 1 cut(s) 3
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 3 cut(s) 4, 41, 171
BslFI GGGAC 1 cut(s) 187
BsmAI GTCTC 2 cut(s) 116, 249
BsmFI GGGAC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 297
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 2 cut(s) 387, 423
BspACI CCGC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 393
BspEI TCCGGA 1 cut(s) 40
BspHI TCATGA 1 cut(s) 264
BspPI GGATC 1 cut(s) 431
BspTI CTTAAG 1 cut(s) 496
BspTNI GGTCTC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 3
BssAI RCCGGY 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 2 cut(s) 387, 423
BssT1I CCWWGG 1 cut(s) 208
Bst2UI CCWGG 2 cut(s) 116, 277
Bst4CI ACNGT 4 cut(s) 102, 110, 190, 472
Bst6I CTCTTC 1 cut(s) 252
BstAFI CTTAAG 1 cut(s) 496
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 401
BstF5I GGATG 4 cut(s) 219, 309, 350, 354
BstKTI GATC 2 cut(s) 390, 426
BstMAI GTCTC 2 cut(s) 116, 249
BstMBI GATC 2 cut(s) 387, 423
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstNI CCWGG 2 cut(s) 116, 277
BstSCI CCNGG 3 cut(s) 114, 170, 275
BstSFI CTRYAG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 423
BstYI RGATCY 1 cut(s) 423
BtsCI GGATG 4 cut(s) 219, 309, 350, 354
BtsIMutI CAGTG 2 cut(s) 98, 513
Cac8I GCNNGC 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 415
CciI TCATGA 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 3
Csp6I GTAC 1 cut(s) 191
CspAI ACCGGT 1 cut(s) 3
CviAII CATG 3 cut(s) 265, 478, 490
CviJI RGCY 2 cut(s) 75, 280
CviKI_1 RGCY 2 cut(s) 75, 280
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 401
DpnI GATC 2 cut(s) 389, 425
DpnII GATC 2 cut(s) 387, 423
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 249
EcoRII CCWGG 2 cut(s) 114, 275
EcoT14I CCWWGG 1 cut(s) 208
EcoT22I ATGCAT 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 3 cut(s) 268, 481, 493
FaiI YATR 7 cut(s) 50, 153, 168, 266, 464, 479, 491
FaqI GGGAC 1 cut(s) 187
FatI CATG 3 cut(s) 264, 477, 489
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 4 cut(s) 226, 316, 357, 361
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 2 cut(s) 76, 209
GluI GCNGC 1 cut(s) 205
GsuI CTGGAG 2 cut(s) 98, 259
HapII CCGG 3 cut(s) 4, 41, 171
Hin1II CATG 3 cut(s) 268, 481, 493
HinfI GANTC 2 cut(s) 219, 268
HpaII CCGG 3 cut(s) 4, 41, 171
HphI GGTGA 2 cut(s) 328, 417
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 402, 486
Hpy188III TCNNGA 3 cut(s) 41, 265, 298
Hpy8I GTNNAC 1 cut(s) 361
HpyAV CCTTC 2 cut(s) 10, 335
HpyCH4III ACNGT 4 cut(s) 102, 110, 190, 472
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 401
Hsp92II CATG 3 cut(s) 268, 481, 493
Kpn2I TCCGGA 1 cut(s) 40
Kzo9I GATC 2 cut(s) 387, 423
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 2 cut(s) 339, 402
MaeI CTAG 2 cut(s) 76, 209
MaeIII GTNAC 2 cut(s) 405, 472
MalI GATC 2 cut(s) 389, 425
MboI GATC 2 cut(s) 387, 423
MboII GAAGA 4 cut(s) 25, 56, 239, 418
MflI RGATCY 1 cut(s) 423
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 4 cut(s) 148, 238, 339, 465
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 3 cut(s) 294, 396, 457
Mph1103I ATGCAT 1 cut(s) 157
MroI TCCGGA 1 cut(s) 40
MseI TTAA 3 cut(s) 233, 457, 497
MslI CAYNNNNRTG 1 cut(s) 506
MspCI CTTAAG 1 cut(s) 496
MspI CCGG 3 cut(s) 4, 41, 171
MspR9I CCNGG 3 cut(s) 116, 172, 277
MvaI CCWGG 2 cut(s) 116, 277
MwoI GCNNNNNNNGC 1 cut(s) 201
NciI CCSGG 1 cut(s) 172
NdeII GATC 2 cut(s) 387, 423
NlaIII CATG 3 cut(s) 268, 481, 493
NmuCI GTSAC 2 cut(s) 405, 472
NsiI ATGCAT 1 cut(s) 157
OliI CACNNNNGTG 1 cut(s) 506
PagI TCATGA 1 cut(s) 264
PfeI GAWTC 1 cut(s) 268
PfoI TCCNGGA 1 cut(s) 114
PinAI ACCGGT 1 cut(s) 3
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PsiI TTATAA 1 cut(s) 464
Psp6I CCWGG 2 cut(s) 114, 275
PspGI CCWGG 2 cut(s) 114, 275
PstNI CAGNNNCTG 1 cut(s) 415
PsuI RGATCY 1 cut(s) 423
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 506
SaqAI TTAA 3 cut(s) 233, 457, 497
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 2 cut(s) 387, 423
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 3 cut(s) 116, 172, 277
SduI GDGCHC 1 cut(s) 297
SetI ASST 3 cut(s) 369, 407, 449
SfaNI GCATC 2 cut(s) 339, 402
SfcI CTRYAG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 2 cut(s) 298, 496
SmoI CTYRAG 2 cut(s) 298, 496
Sse9I AATT 4 cut(s) 148, 238, 339, 465
SsiI CCGC 1 cut(s) 20
SspMI CTAG 2 cut(s) 76, 209
StyD4I CCNGG 3 cut(s) 114, 170, 275
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 4 cut(s) 102, 110, 190, 472
TaqI TCGA 1 cut(s) 442
TasI AATT 4 cut(s) 148, 238, 339, 465
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 3 cut(s) 233, 457, 497
Tru9I TTAA 3 cut(s) 233, 457, 497
TscAI CASTG 2 cut(s) 105, 513
TseFI GTSAC 2 cut(s) 405, 472
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 2 cut(s) 405, 472
TspDTI ATGAA 2 cut(s) 251, 359
TspRI CASTG 2 cut(s) 105, 513
Vha464I CTTAAG 1 cut(s) 496
XmaJI CCTAGG 1 cut(s) 208
XspI CTAG 2 cut(s) 76, 209
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.