Rh2CG352900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000551
Physical Location & Seq
Reverse (-)
47834811 .. 47844825
10015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG352900.1

Sequence Viewer

Length: 1236 bp
ATGGGGGGAGCTTGTTCTAGGAAGAGAAACCATCGAGATGATGAAGATAATTTTCCTAGAGGGATTTGCAGAAGATATTCCAAAAGTGGGAGTTCAAAGTGGTTGGCAACCTCCTTCTCTCGACCTGCTATAGATATTCAACATGACAAAGGGCAATGCCCATCCCTCATGGACTTGTGCGCACGGAAAATACGTGAGGACATTAATAAATATAGCACATTCTCTATGCTCCCAAGAGATATTAGTCAACAGATCATTAATGAGTTGGTGTACTCCGGATGCCTAACTGATGTTTCTTTTGAAGCTTTCCGGGATTGTGCTTTGCAGGATCTTTACTTGGGAGAATACCCTAATGTAAATGATACTTGGATGGATGTCATATCATCACAAGGGTCATCTTTACTCTCGCTAGATCTCTCTGGTTCCGATGTTACCGACAGCGGGTTAATTTATCTCAAAGATTGCACAAATCTCCAAGTGTTAAATTTTAATGATTGTGATGAGATATCAGATCAGGGGCTGGAACACATAAGTGGTCTATCTAACTTGACAAATTTGAGTTTTAGAAGAAATGGTGCAATTACTTCTCATGGAATGAGTGCCTTTGCTAATTTATTTGGCTTGATCAAGTTGGACTTGGAGAGATGCCCAAGGATCCATGGTGGACTTGTTCATCTTCAAGGTTTAACAAAATTAGAGTCTCTTAATATCAAATGGTGCAACTCCATAGCAGATGCTGACATGAAGCCTCTCTCAGGGCTTACAAATTTGAAAAGCATACAAATTTCCTGCAGTAAGGTTACTGATTCTGGCATTACTTATATGAAAGGTCTTCACAATCTTTCTCTTCTGAACTTGGAGGGATGCCTGGTAACTGCTGCATGTTTGGACTCTCTTTCAGCTCTTGATGCCCTGCTGTATCTAAATCTGAGCCGATGTCATCTGACTGATGAAGGATGTGAGAAGTTTTCTCGATTTGGAAACTTAAAAGTACTAAACTTGGGGTTCAATGACATCACAGATGCCTGTCTAGTGCACTTAAAAGGTTTGACAAATTTGGAGAGTCTGAACCTGGATTCATGTAGAATTGGTGATGAAGGGCTGGTTAACTTGACAGGCCTTAAGCATCTGAAATGTCTGGAATTGTCAGATACTGAAGTTGGAAGCAATGGGCTCCGCCATTTGTCAGGTTATATGCTTAACTTTCACTCATGGTTCACATCTATACAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

411

Amino Acids

45.42

Weight (kDa)

5.64

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 150 - 220 1.2e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 226 - 289 7e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 290 - 371 6.7e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
LRR_8 PF13855 307 - 363 2.2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 181
Acc36I ACCTGC 1 cut(s) 133
AccIII TCCGGA 1 cut(s) 275
AciI CCGC 2 cut(s) 441, 1177
AclWI GGATC 3 cut(s) 336, 649, 662
AcsI RAATTY 5 cut(s) 484, 553, 766, 783, 1054
AcuI CTGAAG 1 cut(s) 1176
AfaI GTAC 2 cut(s) 272, 993
AfiI CCNNNNNNNGG 3 cut(s) 87, 441, 755
AflII CTTAAG 1 cut(s) 1121
AgsI TTSAA 6 cut(s) 96, 140, 302, 680, 772, 1009
AjnI CCWGG 2 cut(s) 867, 1071
AleI CACNNNNGTG 1 cut(s) 531
AluBI AGCT 3 cut(s) 11, 305, 902
AluI AGCT 3 cut(s) 11, 305, 902
Alw21I GWGCWC 1 cut(s) 1038
Alw26I GTCTC 1 cut(s) 705
Alw44I GTGCAC 1 cut(s) 1034
AlwI GGATC 3 cut(s) 336, 649, 662
AlwNI CAGNNNCTG 3 cut(s) 520, 737, 1154
Aor13HI TCCGGA 1 cut(s) 275
AoxI GGCC 1 cut(s) 1117
ApaLI GTGCAC 1 cut(s) 1034
ApeKI GCWGC 1 cut(s) 878
ApoI RAATTY 5 cut(s) 484, 553, 766, 783, 1054
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
AseI ATTAAT 2 cut(s) 204, 258
Asp700I GAANNNNTTC 1 cut(s) 76
AspLEI GCGC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 1103
BaeGI GKGCMC 1 cut(s) 1038
BaeI ACNNNNGTAYC 2 cut(s) 1143, 1176
BamHI GGATCC 1 cut(s) 654
BanII GRGCYC 1 cut(s) 1176
BbsI GAAGAC 1 cut(s) 824
Bbv12I GWGCWC 1 cut(s) 1038
BbvI GCAGC 1 cut(s) 865
BccI CCATC 3 cut(s) 39, 169, 364
BciT130I CCWGG 2 cut(s) 869, 1073
BclI TGATCA 1 cut(s) 624
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 705
BfaI CTAG 4 cut(s) 18, 57, 410, 1031
BfmI CTRYAG 2 cut(s) 129, 790
BfrI CTTAAG 1 cut(s) 1121
BfuAI ACCTGC 1 cut(s) 133
BglII AGATCT 1 cut(s) 412
BisI GCNGC 1 cut(s) 879
BlsI GCNGC 1 cut(s) 880
BmcAI AGTACT 1 cut(s) 993
Bme1390I CCNGG 3 cut(s) 311, 869, 1073
BmiI GGNNCC 3 cut(s) 424, 656, 1175
BmrFI CCNGG 3 cut(s) 311, 869, 1073
BmsI GCATC 7 cut(s) 269, 635, 724, 854, 898, 1012, 1135
BpiI GAAGAC 1 cut(s) 824
BpuMI CCSGG 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 650, 658
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 441, 755
Bse3DI GCAATG 2 cut(s) 161, 1174
BseAI TCCGGA 1 cut(s) 275
BseBI CCWGG 2 cut(s) 869, 1073
BseDI CCNNGG 2 cut(s) 650, 658
BseGI GGATG 6 cut(s) 161, 284, 375, 379, 869, 962
BseLI CCNNNNNNNGG 3 cut(s) 87, 441, 755
BseMI GCAATG 2 cut(s) 161, 1174
BseMII CTCAG 2 cut(s) 768, 920
BseSI GKGCMC 1 cut(s) 1038
BseXI GCAGC 1 cut(s) 865
BshFI GGCC 1 cut(s) 1119
BsiHKAI GWGCWC 1 cut(s) 1038
BsiSI CCGG 2 cut(s) 276, 310
BslI CCNNNNNNNGG 3 cut(s) 87, 441, 755
BsmAI GTCTC 1 cut(s) 705
BsnI GGCC 1 cut(s) 1119
Bsp1286I GDGCHC 2 cut(s) 1038, 1176
Bsp13I TCCGGA 1 cut(s) 275
Bsp143I GATC 6 cut(s) 252, 328, 412, 511, 624, 654
Bsp19I CCATGG 1 cut(s) 658
BspACI CCGC 2 cut(s) 441, 1177
BspANI GGCC 1 cut(s) 1119
BspCNI CTCAG 2 cut(s) 767, 921
BspEI TCCGGA 1 cut(s) 275
BspLI GGNNCC 3 cut(s) 424, 656, 1175
BspMAI CTGCAG 1 cut(s) 794
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 3 cut(s) 336, 649, 662
BspTI CTTAAG 1 cut(s) 1121
BsrDI GCAATG 2 cut(s) 161, 1174
BssECI CCNNGG 2 cut(s) 650, 658
BssMI GATC 6 cut(s) 252, 328, 412, 511, 624, 654
BssT1I CCWWGG 2 cut(s) 650, 658
Bst2UI CCWGG 2 cut(s) 869, 1073
Bst6I CTCTTC 2 cut(s) 17, 852
BstAFI CTTAAG 1 cut(s) 1121
BstBAI YACGTR 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 754, 929
BstDSI CCRYGG 1 cut(s) 658
BstENI CCTNNNNNAGG 1 cut(s) 753
BstF5I GGATG 6 cut(s) 161, 284, 375, 379, 869, 962
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 6 cut(s) 255, 331, 415, 514, 627, 657
BstMAI GTCTC 1 cut(s) 705
BstMBI GATC 6 cut(s) 252, 328, 412, 511, 624, 654
BstMWI GCNNNNNNNGC 1 cut(s) 908
BstNI CCWGG 2 cut(s) 869, 1073
BstNSI RCATGY 1 cut(s) 885
BstSCI CCNGG 3 cut(s) 309, 867, 1071
BstSFI CTRYAG 2 cut(s) 129, 790
BstSLI GKGCMC 1 cut(s) 1038
BstV1I GCAGC 1 cut(s) 865
BstV2I GAAGAC 1 cut(s) 824
BstX2I RGATCY 3 cut(s) 328, 412, 654
BstYI RGATCY 3 cut(s) 328, 412, 654
BsuRI GGCC 1 cut(s) 1119
BtgI CCRYGG 1 cut(s) 658
BtsCI GGATG 6 cut(s) 161, 284, 375, 379, 869, 962
BveI ACCTGC 1 cut(s) 133
CaiI CAGNNNCTG 3 cut(s) 520, 737, 1154
CfoI GCGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 271, 992
CviAII CATG 8 cut(s) 143, 169, 590, 659, 742, 882, 1080, 1212
CviQI GTAC 2 cut(s) 271, 992
DdeI CTNAG 2 cut(s) 754, 929
DpnI GATC 6 cut(s) 254, 330, 414, 513, 626, 656
DpnII GATC 6 cut(s) 252, 328, 412, 511, 624, 654
Eam1104I CTCTTC 2 cut(s) 17, 852
EarI CTCTTC 2 cut(s) 17, 852
EciI GGCGGA 1 cut(s) 1166
Eco130I CCWWGG 2 cut(s) 650, 658
Eco147I AGGCCT 1 cut(s) 1119
Eco24I GRGCYC 1 cut(s) 1176
Eco32I GATATC 1 cut(s) 507
Eco57I CTGAAG 1 cut(s) 1176
EcoNI CCTNNNNNAGG 1 cut(s) 753
EcoRII CCWGG 2 cut(s) 867, 1071
EcoRV GATATC 1 cut(s) 507
EcoT14I CCWWGG 2 cut(s) 650, 658
EcoT38I GRGCYC 1 cut(s) 1176
ErhI CCWWGG 2 cut(s) 650, 658
FaeI CATG 8 cut(s) 146, 172, 593, 662, 745, 885, 1083, 1215
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FatI CATG 8 cut(s) 142, 168, 589, 658, 741, 881, 1079, 1211
FauI CCCGC 1 cut(s) 434
FbaI TGATCA 1 cut(s) 624
Fnu4HI GCNGC 1 cut(s) 879
FokI GGATG 6 cut(s) 148, 291, 382, 386, 876, 969
FriOI GRGCYC 1 cut(s) 1176
Fsp4HI GCNGC 1 cut(s) 879
FspAI RTGCGCAY 1 cut(s) 181
FspBI CTAG 4 cut(s) 18, 57, 410, 1031
FspI TGCGCA 1 cut(s) 181
GlaI GCGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 879
HaeIII GGCC 1 cut(s) 1119
HapII CCGG 2 cut(s) 276, 310
HhaI GCGC 1 cut(s) 182
Hin1II CATG 8 cut(s) 146, 172, 593, 662, 745, 885, 1083, 1215
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 2 cut(s) 248, 1108
HindII GTYRAC 2 cut(s) 248, 1108
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 5 cut(s) 698, 806, 890, 1063, 1076
HpaI GTTAAC 1 cut(s) 1108
HpaII CCGG 2 cut(s) 276, 310
HphI GGTGA 1 cut(s) 1103
Hpy166II GTNNAC 6 cut(s) 248, 271, 665, 1036, 1108, 1218
Hpy188I TCNGA 8 cut(s) 427, 511, 852, 930, 945, 1068, 1131, 1150
Hpy188III TCNNGA 6 cut(s) 35, 120, 276, 905, 972, 1139
Hpy8I GTNNAC 6 cut(s) 248, 271, 665, 1036, 1108, 1218
HpyAV CCTTC 3 cut(s) 124, 947, 1091
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 8 cut(s) 69, 325, 465, 578, 720, 792, 881, 1036
HpyF10VI GCNNNNNNNGC 1 cut(s) 908
HpyF3I CTNAG 2 cut(s) 754, 929
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 8 cut(s) 146, 172, 593, 662, 745, 885, 1083, 1215
HspAI GCGC 1 cut(s) 180
Kpn2I TCCGGA 1 cut(s) 275
Ksp22I TGATCA 1 cut(s) 624
KspAI GTTAAC 1 cut(s) 1108
Kzo9I GATC 6 cut(s) 252, 328, 412, 511, 624, 654
LmnI GCTCC 3 cut(s) 8, 234, 1179
Lsp1109I GCAGC 1 cut(s) 865
LweI GCATC 7 cut(s) 269, 635, 724, 854, 898, 1012, 1135
MaeI CTAG 4 cut(s) 18, 57, 410, 1031
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 3 cut(s) 430, 799, 871
MalI GATC 6 cut(s) 254, 330, 414, 513, 626, 656
MboI GATC 6 cut(s) 252, 328, 412, 511, 624, 654
MboII GAAGA 7 cut(s) 34, 56, 84, 579, 668, 824, 839
MflI RGATCY 3 cut(s) 328, 412, 654
MhlI GDGCHC 2 cut(s) 1038, 1176
MlyI GAGTC 3 cut(s) 707, 884, 1072
MmeI TCCRAC 2 cut(s) 612, 1141
MnlI CCTC 6 cut(s) 53, 121, 176, 190, 759, 853
MroI TCCGGA 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 76
MslI CAYNNNNRTG 2 cut(s) 36, 531
MspA1I CMGCKG 1 cut(s) 441
MspCI CTTAAG 1 cut(s) 1121
MspI CCGG 2 cut(s) 276, 310
MspR9I CCNGG 3 cut(s) 311, 869, 1073
MvaI CCWGG 2 cut(s) 869, 1073
MwoI GCNNNNNNNGC 1 cut(s) 908
NciI CCSGG 1 cut(s) 311
NcoI CCATGG 1 cut(s) 658
NdeII GATC 6 cut(s) 252, 328, 412, 511, 624, 654
NlaIII CATG 8 cut(s) 146, 172, 593, 662, 745, 885, 1083, 1215
NlaIV GGNNCC 3 cut(s) 424, 656, 1175
NsbI TGCGCA 1 cut(s) 181
NspI RCATGY 1 cut(s) 885
OliI CACNNNNGTG 1 cut(s) 531
PceI AGGCCT 1 cut(s) 1119
PcsI WCGNNNNNNNCGW 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 806, 1076
PfoI TCCNGGA 1 cut(s) 309
PkrI GCNGC 1 cut(s) 880
PleI GAGTC 3 cut(s) 706, 884, 1071
PpsI GAGTC 3 cut(s) 706, 884, 1071
Ppu21I YACGTR 1 cut(s) 194
PshBI ATTAAT 2 cut(s) 204, 258
Psp6I CCWGG 2 cut(s) 867, 1071
PspGI CCWGG 2 cut(s) 867, 1071
PspN4I GGNNCC 3 cut(s) 424, 656, 1175
PstI CTGCAG 1 cut(s) 794
PstNI CAGNNNCTG 3 cut(s) 520, 737, 1154
PsuI RGATCY 3 cut(s) 328, 412, 654
RsaI GTAC 2 cut(s) 272, 993
RsaNI GTAC 2 cut(s) 271, 992
RseI CAYNNNNRTG 2 cut(s) 36, 531
SatI GCNGC 1 cut(s) 879
Sau3AI GATC 6 cut(s) 252, 328, 412, 511, 624, 654
ScaI AGTACT 1 cut(s) 993
SchI GAGTC 3 cut(s) 707, 884, 1072
ScrFI CCNGG 3 cut(s) 311, 869, 1073
SduI GDGCHC 2 cut(s) 1038, 1176
SfaNI GCATC 7 cut(s) 269, 635, 724, 854, 898, 1012, 1135
SfcI CTRYAG 2 cut(s) 129, 790
SmiMI CAYNNNNRTG 2 cut(s) 36, 531
SmlI CTYRAG 1 cut(s) 1121
SmoI CTYRAG 1 cut(s) 1121
SseBI AGGCCT 1 cut(s) 1119
SsiI CCGC 2 cut(s) 441, 1177
SspMI CTAG 4 cut(s) 18, 57, 410, 1031
StuI AGGCCT 1 cut(s) 1119
StyD4I CCNGG 3 cut(s) 309, 867, 1071
StyI CCWWGG 2 cut(s) 650, 658
TaiI ACGT 1 cut(s) 196
TaqI TCGA 3 cut(s) 34, 121, 973
TatI WGTACW 2 cut(s) 270, 991
TfiI GAWTC 2 cut(s) 806, 1076
TseI GCWGC 1 cut(s) 878
TspDTI ATGAA 7 cut(s) 57, 662, 758, 839, 966, 1068, 1110
TspGWI ACGGA 1 cut(s) 199
Vha464I CTTAAG 1 cut(s) 1121
VneI GTGCAC 1 cut(s) 1034
VspI ATTAAT 2 cut(s) 204, 258
XagI CCTNNNNNAGG 1 cut(s) 753
XapI RAATTY 5 cut(s) 484, 553, 766, 783, 1054
XceI RCATGY 1 cut(s) 885
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 4 cut(s) 18, 57, 410, 1031
ZrmI AGTACT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.