Rh2DG025800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000551
Physical Location & Seq
Reverse (-)
1543460 .. 1550031
6572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG025800.1

Sequence Viewer

Length: 1368 bp
ATGGATGCCATCTGTTCACAAGGTTCATCTCTACTATCTGTTGATCTCTCTGGTTCCGAGGTGACAGATGCTGGATTGGATCTTCTAAAAGACTGCTCGAACCTCCAATCATTAACTTATAATTACTGTGACCATGTTTCAGAACATGGACTTAAGCACATCAGTGGTCTTTCAAATTTGAAATGCTTGAGTTTTAAAAGGAGCAGTGCAATTAGTGCTGAAGGGATGCACGCTTTCTCCAGCCTTTTTAACTTAGAAAAGTTGGACTTGGAGAGGTGTCCTGAGATTCATGGTGGCTTTGTTCATCTTAAAGGTTTGACGAAACTAAAGTCTCTTAATGTTAGATGTTGTAAATGCGTCACAGATTCAGATTTAAAGGCCATCTCAGGGCTTACAAACCTCAATGAATTACAGATATCTAACTGCAACATTACTGATTCTGGAATCTCTTATTTGAAAGGCTTGCAGAAGCTTAATATGTTGAACTTAGAGGGATGCAATGTTACTTCTGCATGTTTGGAATCTATTTCAGCTCTTGTTGCCTTGGCTTACTTAAATCTCAACAGATGCAGTTTATCTGATGAAGGATGTGATAAGTTTTCTGGCCTTACAAACTTGAAGGTTTTGAGCTTGGGATTCAACAGTATCACAGATGCATGTTTGCTGCATCTAAAAGGTTTGACAAATTTGGAGAGCTTGAACCTGGATTCTTGTAAGATAGGTGACGAGGGGCTTGCAAGCTTGGCAGGGTCTGTACTCTTGAAGAATTTGGAGTTATCTGATACTGAAGTCGGAAGCAATGGGATTCGTCATCTCTCAGGGTTAAAGAATCTGGAGAACTTAAACTTGTCGTTCACCCTGGTAACTGACGGTAGTCTGAAAAAGTTATCTGGACTGACATCTCTCAAATCACTTAATCTGGATGCTCGCCAAATTACTGATGCTGGACTTGCAGCTATTACAGGTCTTACAAAATTGACACATCTGGATCTCTTTGGCGCTCGGATTTCAGACTCTGGAGCAAACTCTTTAAAACACTTCAAGAACCTTCAATCTCTTGAAATATGTGGTGGAGGATTGACTGATACTGGTGTGAAGAATCTCAAAGATCTTGTCTGTCTGACATGGCTAAATTTGTCGCAGAACTGCAACTTGACTGATAAATCCTTGGAAGTGATTTCTGGTTTGACTGCATTGGTGTCATTAAACATTTCAAATTCACGCATTACCAATGAGGGATTGCAGTATTTAAAGCCTTTGAAGAATCTACGTTCCTTAACCTTGGAGTCCAGTAAGGTGACTGCATCTGAAATCAGGAAGCTACAGTTTACTGACCTCCCTAATCTTGTAAGCTTTCGACCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

455

Amino Acids

48.8

Weight (kDa)

6.22

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 53 - 187 6.7e-07 Leucine-rich repeat region
DUF7885 PF25372 103 - 167 2e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
LRR_14 PF23598 149 - 292 4.8e-06 Leucine-rich repeat region
LRR_8 PF13855 182 - 240 1e-06 Leucine rich repeat
LRR_14 PF23598 271 - 443 2.5e-08 Leucine-rich repeat region
DUF7885 PF25372 283 - 347 2.1e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
LRR_8 PF13855 349 - 409 9.4e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 120
AclWI GGATC 2 cut(s) 87, 996
AcsI RAATTY 5 cut(s) 175, 685, 766, 1132, 1216
AcuI CTGAAG 2 cut(s) 240, 807
AfaI GTAC 1 cut(s) 756
AfiI CCNNNNNNNGG 1 cut(s) 387
AflII CTTAAG 1 cut(s) 152
AjnI CCWGG 2 cut(s) 702, 858
AleI CACNNNNGTG 1 cut(s) 162
AluBI AGCT 8 cut(s) 472, 533, 630, 696, 741, 956, 1321, 1353
AluI AGCT 8 cut(s) 472, 533, 630, 696, 741, 956, 1321, 1353
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 2 cut(s) 87, 996
AlwNI CAGNNNCTG 3 cut(s) 71, 752, 1016
AoxI GGCC 2 cut(s) 378, 604
ApeKI GCWGC 2 cut(s) 664, 953
ApoI RAATTY 5 cut(s) 175, 685, 766, 1132, 1216
ArsI GACNNNNNNTTYG 4 cut(s) 314, 346, 1098, 1130
AspLEI GCGC 1 cut(s) 1001
AsuHPI GGTGA 4 cut(s) 73, 734, 847, 1309
BaeI ACNNNNGTAYC 4 cut(s) 774, 807, 1077, 1110
BbvI GCAGC 2 cut(s) 651, 965
BccI CCATC 2 cut(s) 17, 389
BcgI CGANNNNNNTGC 2 cut(s) 716, 750
BciT130I CCWGG 2 cut(s) 704, 860
BcoDI GTCTC 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 1322
BfoI RGCGCY 1 cut(s) 1002
BfrI CTTAAG 1 cut(s) 152
BglII AGATCT 1 cut(s) 1108
BisI GCNGC 2 cut(s) 665, 954
BlsI GCNGC 2 cut(s) 666, 955
Bme1390I CCNGG 2 cut(s) 704, 860
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 2 cut(s) 704, 860
BmsI GCATC 9 cut(s) 58, 216, 485, 557, 643, 676, 913, 931, 1313
BoxI GACNNNNGTC 1 cut(s) 873
BpmI CTGGAG 3 cut(s) 223, 854, 1038
BpuEI CTTGAG 1 cut(s) 208
BsaJI CCNNGG 5 cut(s) 57, 543, 858, 1167, 1281
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse1I ACTGG 2 cut(s) 1093, 1290
Bse3DI GCAATG 2 cut(s) 505, 805
BseBI CCWGG 2 cut(s) 704, 860
BseDI CCNNGG 5 cut(s) 57, 543, 858, 1167, 1281
BseGI GGATG 5 cut(s) 10, 231, 500, 593, 928
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMI GCAATG 2 cut(s) 505, 805
BseMII CTCAG 3 cut(s) 273, 399, 831
BseNI ACTGG 2 cut(s) 1093, 1290
BseXI GCAGC 2 cut(s) 651, 965
BshFI GGCC 2 cut(s) 380, 606
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 1 cut(s) 336
BsnI GGCC 2 cut(s) 380, 606
Bsp143I GATC 4 cut(s) 43, 79, 988, 1108
BspANI GGCC 2 cut(s) 380, 606
BspCNI CTCAG 3 cut(s) 274, 398, 830
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 2 cut(s) 87, 996
BspTI CTTAAG 1 cut(s) 152
BsrDI GCAATG 2 cut(s) 505, 805
BsrI ACTGG 2 cut(s) 1093, 1290
BssECI CCNNGG 5 cut(s) 57, 543, 858, 1167, 1281
BssMI GATC 4 cut(s) 43, 79, 988, 1108
BssT1I CCWWGG 3 cut(s) 543, 1167, 1281
Bst2UI CCWGG 2 cut(s) 704, 860
Bst4CI ACNGT 4 cut(s) 128, 644, 872, 1326
BstAFI CTTAAG 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 215
BstC8I GCNNGC 5 cut(s) 231, 464, 735, 739, 928
BstDEI CTNAG 5 cut(s) 253, 282, 385, 487, 817
BstF5I GGATG 5 cut(s) 10, 231, 500, 593, 928
BstH2I RGCGCY 1 cut(s) 1002
BstHHI GCGC 1 cut(s) 1001
BstKTI GATC 4 cut(s) 46, 82, 991, 1111
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 4 cut(s) 43, 79, 988, 1108
BstMWI GCNNNNNNNGC 4 cut(s) 215, 539, 743, 950
BstNI CCWGG 2 cut(s) 704, 860
BstNSI RCATGY 2 cut(s) 516, 660
BstPAI GACNNNNGTC 1 cut(s) 873
BstSCI CCNGG 2 cut(s) 702, 858
BstSFI CTRYAG 1 cut(s) 1322
BstV1I GCAGC 2 cut(s) 651, 965
BstX2I RGATCY 3 cut(s) 79, 988, 1108
BstYI RGATCY 3 cut(s) 79, 988, 1108
BsuRI GGCC 2 cut(s) 380, 606
BtsCI GGATG 5 cut(s) 10, 231, 500, 593, 928
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 2 cut(s) 169, 211
Cac8I GCNNGC 5 cut(s) 231, 464, 735, 739, 928
CaiI CAGNNNCTG 3 cut(s) 71, 752, 1016
CfoI GCGC 1 cut(s) 1001
CseI GACGC 1 cut(s) 346
Csp6I GTAC 1 cut(s) 755
CviAII CATG 6 cut(s) 134, 146, 290, 513, 657, 1125
CviQI GTAC 1 cut(s) 755
DdeI CTNAG 5 cut(s) 253, 282, 385, 487, 817
DpnI GATC 4 cut(s) 45, 81, 990, 1110
DpnII GATC 4 cut(s) 43, 79, 988, 1108
DraI TTTAAA 4 cut(s) 196, 375, 1032, 1251
Eco130I CCWWGG 3 cut(s) 543, 1167, 1281
Eco32I GATATC 1 cut(s) 417
Eco57I CTGAAG 2 cut(s) 240, 807
EcoRII CCWGG 2 cut(s) 702, 858
EcoRV GATATC 1 cut(s) 417
EcoT14I CCWWGG 3 cut(s) 543, 1167, 1281
EcoT22I ATGCAT 1 cut(s) 658
ErhI CCWWGG 3 cut(s) 543, 1167, 1281
FaeI CATG 6 cut(s) 137, 149, 293, 516, 660, 1128
FaiI YATR 9 cut(s) 120, 135, 147, 291, 479, 514, 658, 1066, 1126
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 6 cut(s) 133, 145, 289, 512, 656, 1124
Fnu4HI GCNGC 2 cut(s) 665, 954
FokI GGATG 5 cut(s) 17, 238, 507, 600, 935
Fsp4HI GCNGC 2 cut(s) 665, 954
GlaI GCGC 1 cut(s) 1000
GluI GCNGC 2 cut(s) 665, 954
GsuI CTGGAG 3 cut(s) 223, 854, 1038
HaeII RGCGCY 1 cut(s) 1002
HaeIII GGCC 2 cut(s) 380, 606
HgaI GACGC 1 cut(s) 346
HhaI GCGC 1 cut(s) 1001
Hin1II CATG 6 cut(s) 137, 149, 293, 516, 660, 1128
Hin6I GCGC 1 cut(s) 999
HinP1I GCGC 1 cut(s) 999
HindIII AAGCTT 3 cut(s) 470, 739, 1351
HphI GGTGA 4 cut(s) 73, 734, 847, 1309
Hpy166II GTNNAC 3 cut(s) 17, 855, 1329
Hpy8I GTNNAC 3 cut(s) 17, 855, 1329
HpyAV CCTTC 4 cut(s) 215, 578, 613, 1058
HpyCH4III ACNGT 4 cut(s) 128, 644, 872, 1326
HpyCH4IV ACGT 1 cut(s) 1270
HpyF10VI GCNNNNNNNGC 4 cut(s) 215, 539, 743, 950
HpyF3I CTNAG 5 cut(s) 253, 282, 385, 487, 817
HpySE526I ACGT 1 cut(s) 1270
Hsp92II CATG 6 cut(s) 137, 149, 293, 516, 660, 1128
HspAI GCGC 1 cut(s) 999
Kzo9I GATC 4 cut(s) 43, 79, 988, 1108
LmnI GCTCC 2 cut(s) 201, 1019
Lsp1109I GCAGC 2 cut(s) 651, 965
LweI GCATC 9 cut(s) 58, 216, 485, 557, 643, 676, 913, 931, 1313
MaeII ACGT 1 cut(s) 1270
MaeIII GTNAC 7 cut(s) 61, 128, 358, 502, 722, 862, 1297
MalI GATC 4 cut(s) 45, 81, 990, 1110
MboI GATC 4 cut(s) 43, 79, 988, 1108
MboII GAAGA 4 cut(s) 74, 775, 1108, 1273
MflI RGATCY 3 cut(s) 79, 988, 1108
MlyI GAGTC 2 cut(s) 1007, 1295
MmeI TCCRAC 2 cut(s) 243, 772
MnlI CCTC 9 cut(s) 52, 113, 267, 410, 484, 721, 1067, 1228, 1346
Mph1103I ATGCAT 1 cut(s) 658
MslI CAYNNNNRTG 1 cut(s) 162
MspCI CTTAAG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 704, 860
MvaI CCWGG 2 cut(s) 704, 860
MwoI GCNNNNNNNGC 4 cut(s) 215, 539, 743, 950
NdeII GATC 4 cut(s) 43, 79, 988, 1108
NlaIII CATG 6 cut(s) 137, 149, 293, 516, 660, 1128
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 5 cut(s) 61, 128, 358, 722, 1297
NsiI ATGCAT 1 cut(s) 658
NspI RCATGY 2 cut(s) 516, 660
OliI CACNNNNGTG 1 cut(s) 162
PkrI GCNGC 2 cut(s) 666, 955
PleI GAGTC 2 cut(s) 1007, 1294
PpsI GAGTC 2 cut(s) 1007, 1294
PshAI GACNNNNGTC 1 cut(s) 873
PsiI TTATAA 1 cut(s) 120
Psp6I CCWGG 2 cut(s) 702, 858
PspGI CCWGG 2 cut(s) 702, 858
PspN4I GGNNCC 1 cut(s) 55
PstNI CAGNNNCTG 3 cut(s) 71, 752, 1016
PsuI RGATCY 3 cut(s) 79, 988, 1108
RsaI GTAC 1 cut(s) 756
RsaNI GTAC 1 cut(s) 755
RseI CAYNNNNRTG 1 cut(s) 162
SatI GCNGC 2 cut(s) 665, 954
Sau3AI GATC 4 cut(s) 43, 79, 988, 1108
SchI GAGTC 2 cut(s) 1007, 1295
ScrFI CCNGG 2 cut(s) 704, 860
SfaNI GCATC 9 cut(s) 58, 216, 485, 557, 643, 676, 913, 931, 1313
SfcI CTRYAG 1 cut(s) 1322
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 2 cut(s) 152, 187
SmoI CTYRAG 2 cut(s) 152, 187
StyD4I CCNGG 2 cut(s) 702, 858
StyI CCWWGG 3 cut(s) 543, 1167, 1281
TaaI ACNGT 4 cut(s) 128, 644, 872, 1326
TaiI ACGT 1 cut(s) 1273
TaqI TCGA 2 cut(s) 98, 1357
TatI WGTACW 1 cut(s) 754
TscAI CASTG 2 cut(s) 169, 211
TseFI GTSAC 5 cut(s) 61, 128, 358, 722, 1297
TseI GCWGC 2 cut(s) 664, 953
Tsp45I GTSAC 5 cut(s) 61, 128, 358, 722, 1297
TspDTI ATGAA 5 cut(s) 15, 278, 293, 420, 597
TspRI CASTG 2 cut(s) 169, 211
Vha464I CTTAAG 1 cut(s) 152
XapI RAATTY 5 cut(s) 175, 685, 766, 1132, 1216
XceI RCATGY 2 cut(s) 516, 660
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.