RchiOBHm_Chr1g0325881

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
13986424 .. 13989534
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55556

Sequence Viewer

Length: 321 bp
ATGGGGGGAGCTTGTTCTAGGAAGAGAAACCATCGAGATGATGAAGATAATTTTCCTAGAGGGATTTCCAGAAGATATTCAAAAAGTGGGAGTTCAAAGTGCTTGGCAACCTCCTTCTCTCGACCTGCTATAGATATTCAACATGAAAAAGGGCAATGCCCATCCCTCATGGACTTCTACGTACGGCAAATACGTGAGCGTGCAAGTGCCAAGGAACTGCTAAAGCACTGCTTTATTAGGACTGCTAGGAAGAGTCCAAGACTTCTTGAGAGAATAAGGATTTTTGGGTGTGAGAACTCTAGCTGGAGAACAAGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

12.3

Weight (kDa)

10.46

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
AfaI GTAC 1 cut(s) 183
AgsI TTSAA 3 cut(s) 81, 96, 140
AluBI AGCT 2 cut(s) 11, 303
AluI AGCT 2 cut(s) 11, 303
Asp700I GAANNNNTTC 1 cut(s) 76
BccI CCATC 2 cut(s) 39, 169
BceAI ACGGC 1 cut(s) 200
BfaI CTAG 4 cut(s) 18, 57, 246, 300
BfmI CTRYAG 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 287
BsaAI YACGTR 2 cut(s) 181, 194
BsaJI CCNNGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 161
BsiWI CGTACG 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 210
Bst6I CTCTTC 2 cut(s) 17, 245
BstBAI YACGTR 2 cut(s) 181, 194
BstC8I GCNNGC 1 cut(s) 201
BstF5I GGATG 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 129
BstSNI TACGTA 1 cut(s) 181
BtsCI GGATG 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 226
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 182
CviAII CATG 2 cut(s) 143, 169
CviJI RGCY 2 cut(s) 11, 303
CviKI_1 RGCY 2 cut(s) 11, 303
CviQI GTAC 1 cut(s) 182
Eam1104I CTCTTC 2 cut(s) 17, 245
EarI CTCTTC 2 cut(s) 17, 245
Eco105I TACGTA 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 2 cut(s) 146, 172
FaiI YATR 3 cut(s) 131, 144, 170
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 2 cut(s) 142, 168
FokI GGATG 1 cut(s) 148
FspBI CTAG 4 cut(s) 18, 57, 246, 300
Hin1II CATG 2 cut(s) 146, 172
HinfI GANTC 1 cut(s) 253
Hpy188III TCNNGA 4 cut(s) 35, 69, 120, 266
HpyAV CCTTC 1 cut(s) 124
HpyCH4IV ACGT 2 cut(s) 180, 193
HpyCH4V TGCA 1 cut(s) 203
HpySE526I ACGT 2 cut(s) 180, 193
Hsp92II CATG 2 cut(s) 146, 172
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 3 cut(s) 82, 138, 289
MaeI CTAG 4 cut(s) 18, 57, 246, 300
MaeII ACGT 2 cut(s) 180, 193
MboII GAAGA 4 cut(s) 34, 56, 84, 262
MluCI AATT 1 cut(s) 49
MlyI GAGTC 1 cut(s) 262
MnlI CCTC 4 cut(s) 53, 121, 176, 308
MroXI GAANNNNTTC 1 cut(s) 76
MslI CAYNNNNRTG 1 cut(s) 36
NlaIII CATG 2 cut(s) 146, 172
PcsI WCGNNNNNNNCGW 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 76
Pfl23II CGTACG 1 cut(s) 181
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
Ppu21I YACGTR 2 cut(s) 181, 194
PspLI CGTACG 1 cut(s) 181
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 36
SchI GAGTC 1 cut(s) 262
SetI ASST 6 cut(s) 13, 113, 127, 183, 196, 305
SfcI CTRYAG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SnaBI TACGTA 1 cut(s) 181
Sse9I AATT 1 cut(s) 49
SspMI CTAG 4 cut(s) 18, 57, 246, 300
StyI CCWWGG 1 cut(s) 210
TaiI ACGT 2 cut(s) 183, 196
TaqI TCGA 2 cut(s) 34, 121
TasI AATT 1 cut(s) 49
TscAI CASTG 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 57, 159
TspRI CASTG 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 4 cut(s) 18, 57, 246, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.