Rh2AG025600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000551
Physical Location & Seq
Reverse (-)
1811830 .. 1818366
6537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG025600.1

Sequence Viewer

Length: 1137 bp
ATGATGGGGGGTATTTGCTCGAGAAAGAGAGACCAACCGGTCGTTGAAGAAGGCGGTGTCAGTAGGGTAGTGTCTGGAAGATATGGTAAAAGTAGCAGTTCAAAATGGCTAGGAACTTCGTCTTTTCGTTCCACTGTAGAACAGTCTCCAGGAGTAGCAGGCATTTGCCCATCTCTCTTGGAATTATGCATTTCCAAAATATGCCGGGACATTGACAAATACAGTTCGCTTTCCCTGCTGCCGAAGGATGTGAGTCAGCAAATCTTTAATGAATTGGTCTCTTCCCAATCTCTCACTCATGATTCTCTCCAGGCTTTTAGAGATTGTGCTCTTGAGGATGTTTGTTTGGGCGAATACCCTTCTGTGAATGATAATTGGATGGATGCCATCTGTTCACAAGGTTCATCTCTACTATCTGTTGATCTCTCTGGTTCCGAGGTGACAGATGCTGGATTGGATCTTCTAAAAGACTGCTCGAACCTCCAATCATTAACTTATAATTACTGTGACCATGTTTCAGAACATGGACTTAAGCACATCAGTGGTCTTTCAAATTTGAAATGCTTGAGTTTTAAAAGGAGCAGTGCAATTAGTGCTGAAGGGATGCACGCTTTCTCCAGCCTTTTTAACTTAGAAAAGTTGGACTTGGAGAGGTGTCCTGAGATTCATGGTGGCTTGGTTCATCTTAAAGGTTTGACGAAACTAAAGTCTCTTAATGTTAGATGTTGTAAATCTGTCACAGATTCAGATTTAAAGGCCATCTCAGGGCTTACAAACCTCAATGAATTACAGATATCTAACTGCAACATTACTGATTCTGGAATCTCTTATTTGAAAGGCTTGCAGAAGCTTAATATGTTGAACTTAGAGGGATGCAATGTTACTTCTGCATGTTTGGAATCTATTTCAGCTCTTGTTGCCCTGGCTTACTTAAATCTCAACAGATGCAGTTTATCTGATGAAGGATGTGATAAGTTTTCTGGCCTTACAAACTTGAAGGTTTTGAGCTTGGGATTCAACAGTATCACAGATGCATGTTTGTTGCATCTAAAAGGTTTGACAAATTTGGAGAGCTTGAACCTGGATTCTTGTAAGATAGGTGACGAGGGGCTTGCAAGCTTGGCAGGTTTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

378

Amino Acids

40.59

Weight (kDa)

5.42

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 179 - 362 3.7e-10 Leucine-rich repeat region
DUF7885 PF25372 229 - 293 1.3e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
LRR_8 PF13855 308 - 366 8.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 498
AasI GACNNNNNNGTC 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 1115
AciI CCGC 1 cut(s) 54
AclWI GGATC 1 cut(s) 465
AcsI RAATTY 2 cut(s) 553, 1063
AcuI CTGAAG 1 cut(s) 618
AfiI CCNNNNNNNGG 1 cut(s) 765
AflII CTTAAG 1 cut(s) 530
AgeI ACCGGT 1 cut(s) 37
AgsI TTSAA 9 cut(s) 47, 102, 552, 559, 835, 862, 997, 1018, 1078
AjnI CCWGG 4 cut(s) 148, 309, 921, 1080
AleI CACNNNNGTG 1 cut(s) 540
AluBI AGCT 5 cut(s) 850, 911, 1008, 1074, 1119
AluI AGCT 5 cut(s) 850, 911, 1008, 1074, 1119
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 4 cut(s) 24, 150, 283, 714
AlwI GGATC 1 cut(s) 465
AlwNI CAGNNNCTG 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 2 cut(s) 756, 982
ApeKI GCWGC 1 cut(s) 238
ApoI RAATTY 2 cut(s) 553, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 692, 724
AsiGI ACCGGT 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 451, 1112
AvaI CYCGRG 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 225
BccI CCATC 4 cut(s) 178, 373, 395, 767
BcgI CGANNNNNNTGC 2 cut(s) 1094, 1128
BciT130I CCWGG 4 cut(s) 150, 311, 923, 1082
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 4 cut(s) 24, 150, 283, 714
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 135
BfrI CTTAAG 1 cut(s) 530
BfuAI ACCTGC 1 cut(s) 1115
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
Bme1390I CCNGG 5 cut(s) 150, 206, 311, 923, 1082
BmeT110I CYCGRG 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 5 cut(s) 150, 206, 311, 923, 1082
BmsI GCATC 7 cut(s) 373, 436, 594, 863, 935, 1021, 1054
BpmI CTGGAG 3 cut(s) 132, 293, 601
BpuEI CTTGAG 2 cut(s) 353, 586
BpuMI CCSGG 1 cut(s) 206
BsaI GGTCTC 2 cut(s) 24, 283
BsaJI CCNNGG 2 cut(s) 435, 921
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 599, 629
Bsc4I CCNNNNNNNGG 1 cut(s) 765
Bse118I RCCGGY 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 883
BseBI CCWGG 4 cut(s) 150, 311, 923, 1082
BseDI CCNNGG 2 cut(s) 435, 921
BseGI GGATG 7 cut(s) 253, 343, 384, 388, 609, 878, 971
BseLI CCNNNNNNNGG 1 cut(s) 765
BseMI GCAATG 1 cut(s) 883
BseMII CTCAG 2 cut(s) 651, 777
BseXI GCAGC 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 2 cut(s) 758, 984
BshTI ACCGGT 1 cut(s) 37
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 331
BsiHKCI CYCGRG 1 cut(s) 19
BsiSI CCGG 2 cut(s) 38, 205
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 765
BsmAI GTCTC 4 cut(s) 24, 150, 283, 714
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 2 cut(s) 758, 984
Bso31I GGTCTC 2 cut(s) 24, 283
BsoBI CYCGRG 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 2 cut(s) 421, 457
BspACI CCGC 1 cut(s) 54
BspANI GGCC 2 cut(s) 758, 984
BspCNI CTCAG 2 cut(s) 652, 776
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 433
BspMI ACCTGC 1 cut(s) 1115
BspPI GGATC 1 cut(s) 465
BspTI CTTAAG 1 cut(s) 530
BspTNI GGTCTC 2 cut(s) 24, 283
BsrDI GCAATG 1 cut(s) 883
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 435, 921
BssMI GATC 2 cut(s) 421, 457
Bst2UI CCWGG 4 cut(s) 150, 311, 923, 1082
Bst4CI ACNGT 5 cut(s) 136, 144, 224, 506, 1022
Bst6I CTCTTC 1 cut(s) 286
BstAFI CTTAAG 1 cut(s) 530
BstAPI GCANNNNNTGC 1 cut(s) 593
BstC8I GCNNGC 5 cut(s) 160, 609, 842, 1113, 1117
BstDEI CTNAG 4 cut(s) 631, 660, 763, 865
BstF5I GGATG 7 cut(s) 253, 343, 384, 388, 609, 878, 971
BstKTI GATC 2 cut(s) 424, 460
BstMAI GTCTC 4 cut(s) 24, 150, 283, 714
BstMBI GATC 2 cut(s) 421, 457
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 4 cut(s) 235, 593, 917, 1121
BstNI CCWGG 4 cut(s) 150, 311, 923, 1082
BstNSI RCATGY 2 cut(s) 894, 1038
BstSCI CCNGG 5 cut(s) 148, 204, 309, 921, 1080
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 2 cut(s) 758, 984
BtsCI GGATG 7 cut(s) 253, 343, 384, 388, 609, 878, 971
BtsI GCAGTG 1 cut(s) 589
BtsIMutI CAGTG 3 cut(s) 132, 547, 589
BveI ACCTGC 1 cut(s) 1115
Cac8I GCNNGC 5 cut(s) 160, 609, 842, 1113, 1117
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 37
CspAI ACCGGT 1 cut(s) 37
CviAII CATG 6 cut(s) 299, 512, 524, 668, 891, 1035
DdeI CTNAG 4 cut(s) 631, 660, 763, 865
DpnI GATC 2 cut(s) 423, 459
DpnII GATC 2 cut(s) 421, 457
DraI TTTAAA 2 cut(s) 574, 753
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco31I GGTCTC 2 cut(s) 24, 283
Eco32I GATATC 1 cut(s) 795
Eco57I CTGAAG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 19
EcoRII CCWGG 4 cut(s) 148, 309, 921, 1080
EcoRV GATATC 1 cut(s) 795
EcoT22I ATGCAT 2 cut(s) 191, 1036
FaeI CATG 6 cut(s) 302, 515, 527, 671, 894, 1038
FalI AAGNNNNNCTT 2 cut(s) 629, 661
FaqI GGGAC 1 cut(s) 221
FatI CATG 6 cut(s) 298, 511, 523, 667, 890, 1034
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 7 cut(s) 260, 350, 391, 395, 616, 885, 978
Fsp4HI GCNGC 1 cut(s) 239
FspBI CTAG 1 cut(s) 110
GluI GCNGC 1 cut(s) 239
GsuI CTGGAG 3 cut(s) 132, 293, 601
HaeIII GGCC 2 cut(s) 758, 984
HapII CCGG 2 cut(s) 38, 205
Hin1II CATG 6 cut(s) 302, 515, 527, 671, 894, 1038
HindIII AAGCTT 2 cut(s) 848, 1117
HinfI GANTC 9 cut(s) 253, 302, 664, 743, 815, 822, 899, 1014, 1085
HpaII CCGG 2 cut(s) 38, 205
HphI GGTGA 2 cut(s) 451, 1112
Hpy166II GTNNAC 2 cut(s) 395, 1130
Hpy188I TCNGA 4 cut(s) 436, 520, 748, 958
Hpy188III TCNNGA 6 cut(s) 21, 75, 299, 332, 659, 819
Hpy8I GTNNAC 2 cut(s) 395, 1130
HpyAV CCTTC 6 cut(s) 44, 238, 369, 593, 956, 991
HpyCH4III ACNGT 5 cut(s) 136, 144, 224, 506, 1022
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 593, 917, 1121
HpyF3I CTNAG 4 cut(s) 631, 660, 763, 865
Hsp92II CATG 6 cut(s) 302, 515, 527, 671, 894, 1038
Kzo9I GATC 2 cut(s) 421, 457
LmnI GCTCC 1 cut(s) 579
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 7 cut(s) 373, 436, 594, 863, 935, 1021, 1054
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 5 cut(s) 439, 506, 736, 880, 1100
MalI GATC 2 cut(s) 423, 459
MboI GATC 2 cut(s) 421, 457
MboII GAAGA 4 cut(s) 59, 90, 273, 452
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 8 cut(s) 182, 272, 373, 499, 553, 588, 785, 1063
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 621
MnlI CCTC 7 cut(s) 328, 430, 491, 645, 788, 862, 1099
Mph1103I ATGCAT 2 cut(s) 191, 1036
MslI CAYNNNNRTG 1 cut(s) 540
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 2 cut(s) 38, 205
MspR9I CCNGG 5 cut(s) 150, 206, 311, 923, 1082
MvaI CCWGG 4 cut(s) 150, 311, 923, 1082
MwoI GCNNNNNNNGC 4 cut(s) 235, 593, 917, 1121
NciI CCSGG 1 cut(s) 206
NdeII GATC 2 cut(s) 421, 457
NlaIII CATG 6 cut(s) 302, 515, 527, 671, 894, 1038
NlaIV GGNNCC 1 cut(s) 433
NmuCI GTSAC 4 cut(s) 439, 506, 736, 1100
NsiI ATGCAT 2 cut(s) 191, 1036
NspI RCATGY 2 cut(s) 894, 1038
OliI CACNNNNGTG 1 cut(s) 540
PaeR7I CTCGAG 1 cut(s) 19
PagI TCATGA 1 cut(s) 298
PfeI GAWTC 8 cut(s) 302, 664, 743, 815, 822, 899, 1014, 1085
PfoI TCCNGGA 1 cut(s) 148
PinAI ACCGGT 1 cut(s) 37
PkrI GCNGC 1 cut(s) 240
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PsiI TTATAA 1 cut(s) 498
Psp6I CCWGG 4 cut(s) 148, 309, 921, 1080
PspGI CCWGG 4 cut(s) 148, 309, 921, 1080
PspN4I GGNNCC 1 cut(s) 433
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 540
SatI GCNGC 1 cut(s) 239
Sau3AI GATC 2 cut(s) 421, 457
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 5 cut(s) 150, 206, 311, 923, 1082
SduI GDGCHC 1 cut(s) 331
SfaNI GCATC 7 cut(s) 373, 436, 594, 863, 935, 1021, 1054
SfcI CTRYAG 1 cut(s) 135
Sfr274I CTCGAG 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 4 cut(s) 19, 332, 530, 565
SmoI CTYRAG 4 cut(s) 19, 332, 530, 565
Sse9I AATT 8 cut(s) 182, 272, 373, 499, 553, 588, 785, 1063
SsiI CCGC 1 cut(s) 54
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 5 cut(s) 148, 204, 309, 921, 1080
TaaI ACNGT 5 cut(s) 136, 144, 224, 506, 1022
TaqI TCGA 2 cut(s) 20, 476
TasI AATT 8 cut(s) 182, 272, 373, 499, 553, 588, 785, 1063
TfiI GAWTC 8 cut(s) 302, 664, 743, 815, 822, 899, 1014, 1085
TscAI CASTG 3 cut(s) 139, 547, 589
TseFI GTSAC 4 cut(s) 439, 506, 736, 1100
TseI GCWGC 1 cut(s) 238
Tsp45I GTSAC 4 cut(s) 439, 506, 736, 1100
TspDTI ATGAA 6 cut(s) 285, 393, 656, 671, 798, 975
TspRI CASTG 3 cut(s) 139, 547, 589
Vha464I CTTAAG 1 cut(s) 530
XapI RAATTY 2 cut(s) 553, 1063
XceI RCATGY 2 cut(s) 894, 1038
XhoI CTCGAG 1 cut(s) 19
XspI CTAG 1 cut(s) 110
Zsp2I ATGCAT 2 cut(s) 191, 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.