Rorug05G0039100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000551
Physical Location & Seq
Reverse (-)
3161086 .. 3161807
722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0039100.1

Sequence Viewer

Length: 438 bp
ATGAACCCAAAAATTTCAGATTTTGGATTGGCACGCATAGTTGAAGGAACGCAGAATCTAGAAAATGCTCTGAAGGTTGTGGGAACATGTGGCTATATGTCTCCGGAGTATGCCATGGGTGGGATATTTTCTGAAAAATCTGATGTCTACAGTTTTGGGGTATTGATATTGGAGATTATTAACAGCAAGAAGAATACCAGCTTCTGTTTATATGACCAACAGCTAGGCTTTCTAGCCTATGCATGGAACTTGTGGAATGAAGGCAGGGGACTGGAGTTAGTAGATGAAGTATTGGGTGATTCATATTCCTCATCACAAGTAATGAAATGTGTGCATATTGGGCTTCTTTGTGTACAAGACAGTGCTGCTGATAGGCCAACTATGACGGATATAGTTTTGATGCTAAGTAGTGACACAGATTGTCCTAAACCGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

145

Amino Acids

15.91

Weight (kDa)

4.44

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 64 2.3e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 4 - 133 1e-13 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 103
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 92
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 2 cut(s) 120, 243
AflIII ACRYGT 1 cut(s) 86
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 2 cut(s) 201, 223
AluI AGCT 2 cut(s) 201, 223
Alw26I GTCTC 1 cut(s) 105
AlwNI CAGNNNCTG 1 cut(s) 204
Aor13HI TCCGGA 1 cut(s) 103
AoxI GGCC 2 cut(s) 374, 432
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 308
BbvI GCAGC 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 3 cut(s) 59, 224, 233
BfmI CTRYAG 1 cut(s) 148
BisI GCNGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 367
BmsI GCATC 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 243
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 120, 243
BseNI ACTGG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 352
BshFI GGCC 2 cut(s) 376, 434
BsiSI CCGG 2 cut(s) 104, 431
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 2 cut(s) 120, 243
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 2 cut(s) 376, 434
Bsp13I TCCGGA 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 352
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 2 cut(s) 376, 434
BspEI TCCGGA 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 430
BsrGI TGTACA 1 cut(s) 352
BsrI ACTGG 1 cut(s) 276
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 152, 362
BstAUI TGTACA 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 404
BstDSI CCRYGG 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 340
BstNSI RCATGY 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 352
BsuRI GGCC 2 cut(s) 376, 434
BtgI CCRYGG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 34
CaiI CAGNNNCTG 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 430
Csp6I GTAC 1 cut(s) 353
CviAII CATG 3 cut(s) 87, 115, 243
CviJI RGCY 8 cut(s) 93, 201, 223, 228, 236, 343, 376, 434
CviKI_1 RGCY 8 cut(s) 93, 201, 223, 228, 236, 343, 376, 434
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 1 cut(s) 404
Eco130I CCWWGG 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 3 cut(s) 90, 118, 246
FaqI GGGAC 1 cut(s) 282
FatI CATG 3 cut(s) 86, 114, 242
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 366
Fsp4HI GCNGC 1 cut(s) 366
FspBI CTAG 3 cut(s) 59, 224, 233
GluI GCNGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 293
HaeIII GGCC 2 cut(s) 376, 434
HapII CCGG 2 cut(s) 104, 431
Hin1II CATG 3 cut(s) 90, 118, 246
HinfI GANTC 2 cut(s) 55, 299
HpaII CCGG 2 cut(s) 104, 431
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 2 cut(s) 148, 353
Hpy188I TCNGA 4 cut(s) 19, 72, 133, 142
Hpy188III TCNNGA 2 cut(s) 59, 104
Hpy8I GTNNAC 2 cut(s) 148, 353
HpyAV CCTTC 3 cut(s) 38, 67, 254
HpyCH4III ACNGT 2 cut(s) 152, 362
HpyCH4V TGCA 2 cut(s) 242, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 340
HpyF3I CTNAG 1 cut(s) 404
Hsp92II CATG 3 cut(s) 90, 118, 246
Kpn2I TCCGGA 1 cut(s) 103
LpnPI CCDG 4 cut(s) 117, 211, 250, 257
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 1 cut(s) 390
MaeI CTAG 3 cut(s) 59, 224, 233
MaeIII GTNAC 1 cut(s) 410
MboII GAAGA 1 cut(s) 202
MluCI AATT 1 cut(s) 12
MnlI CCTC 1 cut(s) 319
Mph1103I ATGCAT 1 cut(s) 244
MroI TCCGGA 1 cut(s) 103
MseI TTAA 1 cut(s) 180
MspI CCGG 2 cut(s) 104, 431
MwoI GCNNNNNNNGC 1 cut(s) 340
NcoI CCATGG 1 cut(s) 114
NlaIII CATG 3 cut(s) 90, 118, 246
NmuCI GTSAC 1 cut(s) 410
NsiI ATGCAT 1 cut(s) 244
NspI RCATGY 1 cut(s) 90
PciI ACATGT 1 cut(s) 86
PfeI GAWTC 2 cut(s) 55, 299
PkrI GCNGC 1 cut(s) 367
PscI ACATGT 1 cut(s) 86
PstNI CAGNNNCTG 1 cut(s) 204
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 366
SetI ASST 3 cut(s) 78, 203, 225
SfaNI GCATC 1 cut(s) 390
SfcI CTRYAG 1 cut(s) 148
Sse9I AATT 1 cut(s) 12
SspMI CTAG 3 cut(s) 59, 224, 233
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 152, 362
TasI AATT 1 cut(s) 12
TatI WGTACW 1 cut(s) 352
TfiI GAWTC 2 cut(s) 55, 299
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 1 cut(s) 365
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 5 cut(s) 17, 273, 291, 300, 338
TspGWI ACGGA 1 cut(s) 401
TspRI CASTG 1 cut(s) 367
XapI RAATTY 1 cut(s) 12
XbaI TCTAGA 1 cut(s) 58
XceI RCATGY 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 3 cut(s) 59, 224, 233
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.