RchiOBHm_Chr6g0252571

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000551
Physical Location & Seq
Reverse (-)
7699233 .. 7702213
2981 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22648

Sequence Viewer

Length: 186 bp
ATGAGGGGAGCTTGTTCTAGGAAGAGAAGCCATCGAGATGATGAGGATAATTTTCCTAGAGGGATTTCCAGAAGATATTCCAAAAGTGGGAGTTCAAAGTGCTTGGCAACCTCCTTCTCTCGACTTGCTATAGATATTCAACATGAAAAAGGGCAATGCCCATCCCTCATGGACTTCTACGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

61

Amino Acids

6.98

Weight (kDa)

9.57

Isoelectric Point (pI)

57.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 2 cut(s) 96, 140
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 76
BccI CCATC 2 cut(s) 39, 169
BfaI CTAG 2 cut(s) 18, 57
BfmI CTRYAG 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 161
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMI GCAATG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 181
BstF5I GGATG 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 129
BstSNI TACGTA 1 cut(s) 181
BtsCI GGATG 1 cut(s) 161
CviAII CATG 2 cut(s) 143, 169
CviJI RGCY 2 cut(s) 11, 30
CviKI_1 RGCY 2 cut(s) 11, 30
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco105I TACGTA 1 cut(s) 181
FaeI CATG 2 cut(s) 146, 172
FaiI YATR 4 cut(s) 131, 144, 170, 184
FatI CATG 2 cut(s) 142, 168
FokI GGATG 1 cut(s) 148
FspBI CTAG 2 cut(s) 18, 57
Hin1II CATG 2 cut(s) 146, 172
Hpy188III TCNNGA 3 cut(s) 35, 69, 120
HpyAV CCTTC 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 2 cut(s) 146, 172
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 1 cut(s) 82
MaeI CTAG 2 cut(s) 18, 57
MaeII ACGT 1 cut(s) 180
MboII GAAGA 2 cut(s) 34, 84
MluCI AATT 1 cut(s) 49
MnlI CCTC 4 cut(s) 37, 53, 121, 176
MroXI GAANNNNTTC 1 cut(s) 76
MslI CAYNNNNRTG 1 cut(s) 36
NlaIII CATG 2 cut(s) 146, 172
PdmI GAANNNNTTC 1 cut(s) 76
Ppu21I YACGTR 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 36
SetI ASST 3 cut(s) 13, 113, 183
SfcI CTRYAG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 36
SnaBI TACGTA 1 cut(s) 181
Sse9I AATT 1 cut(s) 49
SspMI CTAG 2 cut(s) 18, 57
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 34, 121
TasI AATT 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 2 cut(s) 18, 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.