Rroxscaffold_7G00171870

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000551
Physical Location & Seq
Reverse (-)
12187313 .. 12189619
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00171870.1

Sequence Viewer

Length: 312 bp
ATGAGGGGAGCTTGTTCTAGGAAGAGAAGCCATCGAGATGATGAAGATAATTTTCCTACAGGGATTTCCAGAAGATATTCCAAAGGTGGGAGTTCAAAGTGCTTGGCAACCTCCTTCTCTCGACTTGCTATAGATATTCAACATGAAAAAGGGCAACGCCCATCCCTCATGGACTTCTACGTACGGCAAATACGTGAGGACCCAATATATGGTAAAGTCATATTTCTTCATGGTAAAGTCTCTCGCACTTTCAAGTACCCCAAGGTAAGGGTAGCTATTCAAGTTCAGAGAATGACTTGCATGCAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

103

Amino Acids

11.95

Weight (kDa)

10.29

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 209
AfaI GTAC 2 cut(s) 183, 257
AfiI CCNNNNNNNGG 3 cut(s) 87, 209, 267
AgsI TTSAA 4 cut(s) 96, 140, 253, 281
AluBI AGCT 2 cut(s) 11, 275
AluI AGCT 2 cut(s) 11, 275
Alw26I GTCTC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 304
Asp700I GAANNNNTTC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 199
AvaII GGWCC 1 cut(s) 199
BccI CCATC 2 cut(s) 39, 169
BceAI ACGGC 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 2 cut(s) 57, 129
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 201
BsaAI YACGTR 2 cut(s) 181, 194
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 209, 267
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 3 cut(s) 87, 209, 267
BsiWI CGTACG 1 cut(s) 181
BslI CCNNNNNNNGG 3 cut(s) 87, 209, 267
BsmAI GTCTC 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 17
BstBAI YACGTR 2 cut(s) 181, 194
BstC8I GCNNGC 1 cut(s) 302
BstF5I GGATG 1 cut(s) 161
BstMAI GTCTC 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 304
BstSFI CTRYAG 2 cut(s) 57, 129
BstSNI TACGTA 1 cut(s) 181
BtsCI GGATG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 2 cut(s) 182, 256
CviAII CATG 5 cut(s) 143, 169, 230, 301, 309
CviJI RGCY 4 cut(s) 11, 30, 275, 307
CviKI_1 RGCY 4 cut(s) 11, 30, 275, 307
CviQI GTAC 2 cut(s) 182, 256
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco105I TACGTA 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 5 cut(s) 146, 172, 233, 304, 312
FaiI YATR 9 cut(s) 131, 144, 170, 208, 210, 221, 231, 302, 310
FatI CATG 5 cut(s) 142, 168, 229, 300, 308
Fnu4HI GCNGC 1 cut(s) 305
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 305
FspBI CTAG 1 cut(s) 18
GluI GCNGC 1 cut(s) 305
Hin1II CATG 5 cut(s) 146, 172, 233, 304, 312
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 3 cut(s) 35, 69, 120
HpyAV CCTTC 1 cut(s) 124
HpyCH4IV ACGT 2 cut(s) 180, 193
HpyCH4V TGCA 2 cut(s) 300, 304
HpySE526I ACGT 2 cut(s) 180, 193
Hsp92II CATG 5 cut(s) 146, 172, 233, 304, 312
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 2 cut(s) 45, 82
MaeI CTAG 1 cut(s) 18
MaeII ACGT 2 cut(s) 180, 193
MboII GAAGA 4 cut(s) 34, 56, 84, 218
MluCI AATT 1 cut(s) 49
MnlI CCTC 3 cut(s) 121, 176, 190
MroXI GAANNNNTTC 1 cut(s) 76
MslI CAYNNNNRTG 1 cut(s) 36
NlaIII CATG 5 cut(s) 146, 172, 233, 304, 312
NlaIV GGNNCC 1 cut(s) 201
NspI RCATGY 1 cut(s) 304
PaeI GCATGC 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 76
Pfl23II CGTACG 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 1 cut(s) 306
Ppu21I YACGTR 2 cut(s) 181, 194
PpuMI RGGWCCY 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 199
PspLI CGTACG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 199
PspPPI RGGWCCY 1 cut(s) 199
RsaI GTAC 2 cut(s) 183, 257
RsaNI GTAC 2 cut(s) 182, 256
RseI CAYNNNNRTG 1 cut(s) 36
SatI GCNGC 1 cut(s) 305
Sau96I GGNCC 1 cut(s) 199
SetI ASST 7 cut(s) 13, 88, 113, 183, 196, 267, 277
SfcI CTRYAG 2 cut(s) 57, 129
SinI GGWCC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 36
SnaBI TACGTA 1 cut(s) 181
SphI GCATGC 1 cut(s) 304
Sse9I AATT 1 cut(s) 49
SspMI CTAG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 261
TaiI ACGT 2 cut(s) 183, 196
TaqI TCGA 2 cut(s) 34, 121
TasI AATT 1 cut(s) 49
TseI GCWGC 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 57, 159, 218
Van91I CCANNNNNTGG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 199
XceI RCATGY 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.