Rh7BG234800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000551
Physical Location & Seq
Forward (+)
20549679 .. 20553350
3672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG234800.1

Sequence Viewer

Length: 321 bp
ATGCCGCTCTCGGTCTTTTCGTTTCGCGCCTTTAGCCCATCTCATTTTATTAAGGATTTTTTATTCTTTTCAACACTTCACTTTTTTCTTCTCGTTCTATCTCTCTCTCTCTCTCGCACAGCTCCGCCTCCTCGTTATCCCTATGCTAGCTACTTGAAGAAAAACTCTGAGCTCAAGACTCAATGTTTCAATCTATCGTCTAAAAGCTTTGAGGTCGTTTGTGGCATCTTTGAAGAAAAGAATCAATCAATCGCATTTCTCAATTCAAGGGTGTTTTTGGTTTTTTCAAAAGGACAGAACTGTTGTTGGCAAGTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.25

Weight (kDa)

9.24

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15740
fragaria_vesca FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_1g02020 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_6g29180 FvH4_7g04581
malus_domestica MD02G1018400.v1.1 MD15G1162400.v1.1 MD17G1217000.v1.1
prunus_persica Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.3G092900_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1 Prupe.7G252400_v2.0.a1
pyrus_communis pycom15g14600 pycom17g22160
rosa_chinensis RchiOBHm_Chr1g0325881 RchiOBHm_Chr2g0087081 RchiOBHm_Chr2g0134401 RchiOBHm_Chr6g0252571
rosa_laevigata RLG00000015828 RLG00000019390
rosa_multiflora Rmu_co8182664.1_g000001 Rmu_sc0005550.1_g000003 Rmu_sc0013657.1_g000009 Rmu_ssc0000064.1_g000031
rosa_roxburghii Rroxscaffold_2G00110270 Rroxscaffold_3G00253750 Rroxscaffold_7G00171870
rosa_rugosa Rorug01G0472200 Rorug01G0472300 Rorug02G0316800 Rorug05G0039000 Rorug05G0039100 Rorug06G0116400
rosa_samantha Rh1DG076800 Rh2AG025600 Rh2AG369200 Rh2BG025300 Rh2BG375300 Rh2CG025900 Rh2CG352900 Rh2CG433900 Rh2DG025800 Rh2DG392400 Rh3DG227300 Rh7BG234800 Rh7CG498200
rosa_wichuraiana Rw1G005860 Rw2G002030 Rw2G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 7
AccII CGCG 1 cut(s) 27
AciI CCGC 2 cut(s) 5, 125
AgsI TTSAA 6 cut(s) 72, 157, 190, 233, 267, 288
AluBI AGCT 4 cut(s) 122, 150, 172, 207
AluI AGCT 4 cut(s) 122, 150, 172, 207
Alw21I GWGCWC 1 cut(s) 174
AspLEI GCGC 1 cut(s) 29
AsuNHI GCTAGC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 174
BccI CCATC 1 cut(s) 46
BfaI CTAG 1 cut(s) 147
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmsI GCATC 1 cut(s) 234
BmtI GCTAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 174
BspACI CCGC 2 cut(s) 5, 125
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 1 cut(s) 27
BspOI GCTAGC 1 cut(s) 150
BsrBI CCGCTC 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 168
BstFNI CGCG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 29
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstUI CGCG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 1 cut(s) 29
CviJI RGCY 5 cut(s) 36, 122, 150, 172, 207
CviKI_1 RGCY 5 cut(s) 36, 122, 150, 172, 207
DdeI CTNAG 1 cut(s) 168
EciI GGCGGA 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco53kI GAGCTC 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 174
FaiI YATR 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 5
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 5
HhaI GCGC 1 cut(s) 29
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 2 cut(s) 178, 241
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 168
HspAI GCGC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 127
LweI GCATC 1 cut(s) 234
MaeI CTAG 1 cut(s) 147
MbiI CCGCTC 1 cut(s) 7
MboII GAAGA 3 cut(s) 80, 169, 245
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 1 cut(s) 262
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 3 cut(s) 138, 141, 205
MseI TTAA 1 cut(s) 51
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 33
NheI GCTAGC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 174
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 1 cut(s) 5
SchI GAGTC 1 cut(s) 172
SduI GDGCHC 1 cut(s) 174
SetI ASST 5 cut(s) 124, 152, 174, 209, 216
SfaNI GCATC 1 cut(s) 234
SgeI CNNG 9 cut(s) 22, 38, 104, 126, 144, 159, 166, 187, 279
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 1 cut(s) 262
SsiI CCGC 2 cut(s) 5, 125
SspMI CTAG 1 cut(s) 147
SstI GAGCTC 1 cut(s) 174
TaaI ACNGT 1 cut(s) 302
TasI AATT 1 cut(s) 262
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.